bam-masterdata 0.6.2__tar.gz → 0.6.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (137) hide show
  1. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/PKG-INFO +1 -1
  2. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/_version.py +2 -2
  3. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/cli.py +4 -2
  4. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/PKG-INFO +1 -1
  5. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.coveragerc +0 -0
  6. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.github/release.yml +0 -0
  7. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.github/workflows/actions.yml +0 -0
  8. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.github/workflows/coveralls.yml +0 -0
  9. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.github/workflows/mkdocs-deploy.yml +0 -0
  10. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.github/workflows/publish.yml +0 -0
  11. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.gitignore +0 -0
  12. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/.vscode/settings.json +0 -0
  13. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/AUTHORS +0 -0
  14. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/LICENSE +0 -0
  15. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/LICENSE.datamodel +0 -0
  16. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/NOTICE +0 -0
  17. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/README.md +0 -0
  18. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/__init__.py +0 -0
  19. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/__init__.py +0 -0
  20. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/checker.py +0 -0
  21. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/masterdata_validator.py +0 -0
  22. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/source_loader.py +0 -0
  23. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/validation_rules/all_validation_rules.json +0 -0
  24. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/validation_rules/excel_validation_rules.json +0 -0
  25. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/checker/validation_rules/validation_rules.json +0 -0
  26. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/__init__.py +0 -0
  27. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/entities_to_excel.py +0 -0
  28. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/entities_to_rdf.py +0 -0
  29. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/excel_to_entities.py +0 -0
  30. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/fill_masterdata.py +0 -0
  31. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/datamodel/__init__.py +0 -0
  32. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/datamodel/collection_types.py +0 -0
  33. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/datamodel/dataset_types.py +0 -0
  34. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/datamodel/object_types.py +0 -0
  35. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/datamodel/vocabulary_types.py +0 -0
  36. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/excel/__init__.py +0 -0
  37. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/excel/excel_to_entities.py +0 -0
  38. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/logger.py +0 -0
  39. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/metadata/__init__.py +0 -0
  40. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/metadata/_maps.py +0 -0
  41. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/metadata/definitions.py +0 -0
  42. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/metadata/entities.py +0 -0
  43. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/metadata/entities_dict.py +0 -0
  44. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/openbis/__init__.py +0 -0
  45. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/openbis/get_entities.py +0 -0
  46. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/openbis/login.py +0 -0
  47. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/parsing/__init__.py +0 -0
  48. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/parsing/parsing.py +0 -0
  49. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/utils/__init__.py +0 -0
  50. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/utils/paths.py +0 -0
  51. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/utils/utils.py +0 -0
  52. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/SOURCES.txt +0 -0
  53. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/dependency_links.txt +0 -0
  54. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/entry_points.txt +0 -0
  55. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/requires.txt +0 -0
  56. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/top_level.txt +0 -0
  57. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/bammasterdata_blue_transparent.png +0 -0
  58. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/bammasterdata_blue_transparent_text.png +0 -0
  59. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/bammasterdata_blue_transparent_text.svg +0 -0
  60. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/bammasterdata_blue_white.png +0 -0
  61. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/bammasterdata_blue_white_text.png +0 -0
  62. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/datastore-logo-white.png +0 -0
  63. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/datastore-logo.png +0 -0
  64. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/drawio/checker-structure.drawio +0 -0
  65. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/drawio/levels_base_entities.drawio +0 -0
  66. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/drawio/masterdata-workflow.drawio +0 -0
  67. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/drawio/masterdata-workflow.drawio.png +0 -0
  68. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/drawio/parsing.drawio +0 -0
  69. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/drawio/uml-structure.drawio +0 -0
  70. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/fonts/BAMKlavika-Light.ttf +0 -0
  71. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/fonts/BAMKlavika-LightItalic.ttf +0 -0
  72. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/fonts/BAMKlavika-Medium.ttf +0 -0
  73. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/assets/fonts/BAMKlavika-MediumItalic.ttf +0 -0
  74. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/explanations/data-store.md +0 -0
  75. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/explanations/openbis.md +0 -0
  76. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/explanations/pybis.md +0 -0
  77. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/overview.md +0 -0
  78. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/collections.md +0 -0
  79. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/datasets.md +0 -0
  80. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/objects.md +0 -0
  81. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/objects_props.md +0 -0
  82. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/parent_child.md +0 -0
  83. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/projects.md +0 -0
  84. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/searches.md +0 -0
  85. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/setup.md +0 -0
  86. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/howtos/pybis/spaces.md +0 -0
  87. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/index.md +0 -0
  88. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/references/collection.md +0 -0
  89. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/references/controlled-vocabulary.md +0 -0
  90. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/references/dataset.md +0 -0
  91. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/stylesheets/extra.css +0 -0
  92. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/tutorials/create-masterdata.md +0 -0
  93. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/docs/tutorials/pybis.md +0 -0
  94. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/mkdocs.yml +0 -0
  95. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/pyproject.toml +0 -0
  96. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/scripts/install_python_dependencies.bat +0 -0
  97. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/scripts/install_python_dependencies.sh +0 -0
  98. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/scripts/pkg_size.py +0 -0
  99. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/setup.cfg +0 -0
  100. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/__init__.py +0 -0
  101. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/checker/test_source_loader.py +0 -0
  102. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/cli/test_entities_to_excel.py +0 -0
  103. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/cli/test_entities_to_rdf.py +0 -0
  104. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/conftest.py +0 -0
  105. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/datamodel_test/collection_types.py +0 -0
  106. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/datamodel_test/dataset_types.py +0 -0
  107. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/datamodel_test/object_types.py +0 -0
  108. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example01_codedoesnoteexists.xlsx +0 -0
  109. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example02_codeexists_proptype_datatypechanged.xlsx +0 -0
  110. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example03_codeexists_proptype_contvoccodechanged.xlsx +0 -0
  111. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example04_codeexists_proptype_objectcodechanged.xlsx +0 -0
  112. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example05_codeexists_proptype_warningdefschanged.xlsx +0 -0
  113. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example06_codeexists_proptype_vocobjcodemiss.xlsx +0 -0
  114. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example07_codeexists_objtype_warningdefschanged.xlsx +0 -0
  115. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example08_codeexists_objtype_assignprop_listcodeschanged_add.xlsx +0 -0
  116. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example09_codeexists_objtype_assignprop_listcodeschanged_del.xlsx +0 -0
  117. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example10_codeexists_objtype_assignprop_codedoesnotexists.xlsx +0 -0
  118. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example11_codeexists_objtype_assignprop_listcodeschanged_datatypechanged.xlsx +0 -0
  119. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example12_codeexists_objtype_assignprop_listcodeschanged_warningdefschanged.xlsx +0 -0
  120. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example13_codeexists_objtype_assignprop_coincide2objects.xlsx +0 -0
  121. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example_incoming_excel.xlsx +0 -0
  122. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example_incoming_python/collection_types.py +0 -0
  123. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example_incoming_python/dataset_types.py +0 -0
  124. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/example_incoming_python/object_types.py +0 -0
  125. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/masterdata_example.xlsx +0 -0
  126. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/masterdata_excel_output.json +0 -0
  127. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/checker/masterdata_python_output.json +0 -0
  128. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/metadata/example_vocabulary.py +0 -0
  129. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/utils/example_prop_types_1.py +0 -0
  130. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/data/utils/example_prop_types_2.py +0 -0
  131. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/excel/test_excel_to_entities.py +0 -0
  132. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/metadata/test_definitions.py +0 -0
  133. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/metadata/test_entities.py +0 -0
  134. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/metadata/test_entities_dict.py +0 -0
  135. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/test_logger.py +0 -0
  136. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/utils/test_paths.py +0 -0
  137. {bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/tests/utils/test_utils.py +0 -0
{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bam-masterdata
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- Version: 0.6.2
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+ Version: 0.6.3
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  Summary: The BAM Data Store utility tools and masterdata models wrapped in a Python package with a front-end web interface.
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  Author-email: BAM Data Store <datastore@bam.de>
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  Maintainer-email: "Jose M. Pizarro" <jose.pizarro-blanco@bam.de>
{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/_version.py RENAMED
@@ -17,5 +17,5 @@ __version__: str
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '0.6.2'
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- __version_tuple__ = version_tuple = (0, 6, 2)
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+ __version__ = version = '0.6.3'
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+ __version_tuple__ = version_tuple = (0, 6, 3)
{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata/cli/cli.py RENAMED
@@ -623,8 +623,9 @@ def run_parser(
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  if project_name.upper() in [p.code for p in space.get_projects()]:
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  project = space.get_project(project_name)
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  else:
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+ logger.info("Replacing project code with uppercase and underscores.")
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  project = space.new_project(
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- code=project_name,
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+ code=project_name.replace(" ", "_").upper(),
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  description="New project created via automated parsing with `bam_masterdata`.",
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  )
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  project.save()
@@ -635,8 +636,9 @@ def run_parser(
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  f"/{openbis.username}/{project_name}/{collection_name}".upper()
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  )
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  else:
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+ logger.info("Replacing collection code with uppercase and underscores.")
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  collection_openbis = openbis.new_collection(
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- code=collection_name,
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+ code=collection_name.replace(" ", "_").upper(),
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  type="COLLECTION",
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  project=project,
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  )
{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/bam_masterdata.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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2
  Name: bam-masterdata
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- Version: 0.6.2
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+ Version: 0.6.3
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  Summary: The BAM Data Store utility tools and masterdata models wrapped in a Python package with a front-end web interface.
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  Author-email: BAM Data Store <datastore@bam.de>
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  Maintainer-email: "Jose M. Pizarro" <jose.pizarro-blanco@bam.de>
{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/AUTHORS RENAMED
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{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/LICENSE RENAMED
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{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/NOTICE RENAMED
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{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/README.md RENAMED
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{bam_masterdata-0.6.2 → bam_masterdata-0.6.3}/setup.cfg RENAMED
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