awslabs.healthlake-mcp-server 0.0.1__tar.gz

awslabs_healthlake_mcp_server-0.0.1/.dockerignore

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+# Virtual environments
+.venv/
+venv/
+
+# Git
+.git/
+.gitignore
+
+# Python cache
+__pycache__/
+*.pyc
+*.pyo
+*.pyd
+.Python
+*.so
+
+# Testing
+.pytest_cache/
+tests/results/
+.coverage
+
+# IDE
+.vscode/
+.idea/
+
+# Documentation
+docs/
+
+# Build artifacts
+build/
+dist/
+*.egg-info/
+
+# OS
+.DS_Store
+Thumbs.db

awslabs_healthlake_mcp_server-0.0.1/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# AWS credentials
+.aws/
+
+# IDE files
+.vscode/
+.idea/
+*.swp
+*.swo
+
+# OS files
+.DS_Store
+Thumbs.db

awslabs_healthlake_mcp_server-0.0.1/.python-version

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+3.10

awslabs_healthlake_mcp_server-0.0.1/CHANGELOG.md

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+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## Unreleased
+
+### Added
+
+- Initial project setup

awslabs_healthlake_mcp_server-0.0.1/CONTRIBUTING.md

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+# Contributing to HealthLake MCP Server
+
+Thank you for your interest in contributing to the HealthLake MCP Server! This document provides guidelines for contributing to the project.
+
+## Development Setup
+
+1. **Clone the repository**
+   ```bash
+   git clone <repository-url>
+   cd healthlake-mcp-server
+   ```
+
+2. **Set up virtual environment**
+   ```bash
+   uv sync --dev
+   source .venv/bin/activate  # On Windows: .venv\Scripts\activate
+   ```
+
+3. **Install development dependencies**
+   ```bash
+   # Dependencies are already installed by uv sync --dev
+   ```
+
+## Development Workflow
+
+### Making Changes
+
+1. **Create a feature branch**
+   ```bash
+   git checkout -b feature/your-feature-name
+   ```
+
+2. **Make your changes**
+   - Follow the existing code style and patterns
+   - Add unit tests for new functionality
+   - Update documentation as needed
+
+3. **Test your changes**
+   ```bash
+   make test          # Run unit tests
+   make test-coverage # Run tests with coverage
+   make lint          # Check code style
+   make format        # Format code
+   ```
+
+4. **Commit and push**
+   ```bash
+   git add .
+   git commit -m "feat: add new feature"
+   git push origin feature/your-feature-name
+   ```
+
+5. **Create a pull request**
+
+### Code Style
+
+- **Python**: Follow PEP 8 style guidelines
+- **Formatting**: Use `black` and `isort` (run `make format`)
+- **Linting**: Use `mypy` for type checking (run `make lint`)
+- **Line length**: 88 characters (black default)
+
+### Testing
+
+- **Unit tests only**: We use fast, isolated unit tests without external dependencies
+- **Test location**: Place tests in `tests/` directory
+- **Test naming**: Use descriptive test function names starting with `test_`
+- **Coverage**: Aim for good test coverage of new functionality
+
+### Documentation
+
+- **README**: Update if adding new features or changing installation
+- **Docstrings**: Add docstrings to new functions and classes
+- **Type hints**: Use type hints for all function parameters and return values
+
+## Project Structure
+
+```
+awslabs/healthlake_mcp_server/
+├── server.py           # MCP server implementation with tool handlers
+├── fhir_operations.py  # AWS HealthLake client operations
+├── main.py            # Entry point and CLI setup
+└── __init__.py        # Package initialization
+
+tests/
+├── conftest.py        # Test fixtures
+├── test_server.py     # Server creation tests
+├── test_tool_handler.py # Tool dispatch logic tests
+├── test_validation.py # Input validation tests
+└── test_responses.py  # Response formatting tests
+```
+
+## Commit Message Guidelines
+
+Use conventional commit format:
+
+- `feat:` - New features
+- `fix:` - Bug fixes
+- `docs:` - Documentation changes
+- `style:` - Code style changes (formatting, etc.)
+- `refactor:` - Code refactoring
+- `test:` - Adding or updating tests
+- `chore:` - Maintenance tasks
+
+Examples:
+- `feat: add patient-everything operation`
+- `fix: handle empty search results correctly`
+- `docs: update installation instructions`
+
+## Pull Request Guidelines
+
+- **Title**: Use descriptive titles that explain the change
+- **Description**: Provide context and explain what the PR does
+- **Tests**: Ensure all tests pass
+- **Documentation**: Update documentation if needed
+- **Size**: Keep PRs focused and reasonably sized
+
+## Getting Help
+
+- **Questions**: Open an issue with the "question" label
+- **Bugs**: Open an issue with the "bug" label and include reproduction steps
+- **Features**: Open an issue with the "enhancement" label to discuss before implementing
+
+## Code of Conduct
+
+- Be respectful and inclusive
+- Focus on constructive feedback
+- Help maintain a welcoming environment for all contributors
+
+Thank you for contributing!

awslabs_healthlake_mcp_server-0.0.1/Dockerfile

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+# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# dependabot should continue to update this to the latest hash.
+FROM public.ecr.aws/docker/library/python:3.13.7-alpine3.22@sha256:587df003ff48316a56a0ddac50e1e2b64dfeca281f0c071b91920895a65b12d2 AS uv
+
+# Install the project into `/app`
+WORKDIR /app
+
+# Enable bytecode compilation
+ENV UV_COMPILE_BYTECODE=1
+
+# Copy from the cache instead of linking since it's a mounted volume
+ENV UV_LINK_MODE=copy
+
+# Prefer the system python
+ENV UV_PYTHON_PREFERENCE=only-system
+
+# Run without updating the uv.lock file like running with `--frozen`
+ENV UV_FROZEN=true
+
+# Copy the required files first
+COPY pyproject.toml uv.lock uv-requirements.txt ./
+
+# Python optimization and uv configuration
+ENV PIP_NO_CACHE_DIR=1 \
+    PIP_DISABLE_PIP_VERSION_CHECK=1
+
+# Install system dependencies and Python package manager
+RUN apk update && \
+    apk add --no-cache --virtual .build-deps \
+    build-base \
+    gcc \
+    musl-dev \
+    libffi-dev \
+    openssl-dev \
+    cargo && \
+    pip install uv
+
+# Install the project's dependencies using the lockfile and settings
+RUN --mount=type=cache,target=/root/.cache/uv \
+    pip install --require-hashes --requirement uv-requirements.txt --no-cache-dir && \
+    uv sync --python 3.13 --frozen --no-install-project --no-dev --no-editable
+
+# Then, add the rest of the project source code and install it
+# Installing separately from its dependencies allows optimal layer caching
+COPY . /app
+RUN --mount=type=cache,target=/root/.cache/uv \
+    uv sync --python 3.13 --frozen --no-dev --no-editable
+
+# Make the directory just in case it doesn't exist
+RUN mkdir -p /root/.local
+
+FROM public.ecr.aws/docker/library/python:3.13.7-alpine3.22@sha256:587df003ff48316a56a0ddac50e1e2b64dfeca281f0c071b91920895a65b12d2
+
+# Place executables in the environment at the front of the path and include other binaries
+ENV PATH="/app/.venv/bin:$PATH" \
+    PYTHONUNBUFFERED=1
+
+# Install runtime dependencies and create application user
+RUN apk update && \
+    apk add --no-cache ca-certificates && \
+    update-ca-certificates && \
+    addgroup -S app && \
+    adduser -S app -G app -h /app
+
+# Copy application artifacts from build stage
+COPY --from=uv --chown=app:app /app/.venv /app/.venv
+
+# Get healthcheck script
+COPY ./docker-healthcheck.sh /usr/local/bin/docker-healthcheck.sh
+
+# Run as non-root
+USER app
+
+# When running the container, add --db-path and a bind mount to the host's db file
+HEALTHCHECK --interval=60s --timeout=10s --start-period=10s --retries=3 CMD ["docker-healthcheck.sh"]
+ENTRYPOINT ["awslabs.healthlake-mcp-server"]

awslabs_healthlake_mcp_server-0.0.1/LICENSE

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+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
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+      any Contribution intentionally submitted for inclusion in the Work
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awslabs_healthlake_mcp_server-0.0.1/NOTICE

@@ -0,0 +1,2 @@
+awslabs.healthlake-mcp-server
+Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.