autowisp 1.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (514) hide show
  1. autowisp-1.0.0/.github/workflows/run_tests.yml +49 -0
  2. autowisp-1.0.0/.gitignore +120 -0
  3. autowisp-1.0.0/.idea/vcs.xml +6 -0
  4. autowisp-1.0.0/.pylintrc +541 -0
  5. autowisp-1.0.0/0-180-3618.hdf5 +0 -0
  6. autowisp-1.0.0/AutoWISP.png +0 -0
  7. autowisp-1.0.0/LICENSE +21 -0
  8. autowisp-1.0.0/PKG-INFO +76 -0
  9. autowisp-1.0.0/README.md +106 -0
  10. autowisp-1.0.0/README.rst +7 -0
  11. autowisp-1.0.0/autowisp/.gitattributes +1 -0
  12. autowisp-1.0.0/autowisp/.gitignore +2 -0
  13. autowisp-1.0.0/autowisp/Dump2hdf5.py +99 -0
  14. autowisp-1.0.0/autowisp/__init__.py +20 -0
  15. autowisp-1.0.0/autowisp/astrometry/__init__.py +11 -0
  16. autowisp-1.0.0/autowisp/astrometry/anmatch_transformation.py +175 -0
  17. autowisp-1.0.0/autowisp/astrometry/astrometry.py +661 -0
  18. autowisp-1.0.0/autowisp/astrometry/astrometry_net_client.py +706 -0
  19. autowisp-1.0.0/autowisp/astrometry/healpix_utilities.py +59 -0
  20. autowisp-1.0.0/autowisp/astrometry/map_projections.py +99 -0
  21. autowisp-1.0.0/autowisp/astrometry/meson.build +14 -0
  22. autowisp-1.0.0/autowisp/astrometry/transformation.py +284 -0
  23. autowisp-1.0.0/autowisp/bui_util.py +98 -0
  24. autowisp-1.0.0/autowisp/catalog.py +1244 -0
  25. autowisp-1.0.0/autowisp/data_reduction/__init__.py +4 -0
  26. autowisp-1.0.0/autowisp/data_reduction/data_reduction_file.py +1131 -0
  27. autowisp-1.0.0/autowisp/data_reduction/meson.build +11 -0
  28. autowisp-1.0.0/autowisp/data_reduction/source_extracted_psf_map.py +73 -0
  29. autowisp-1.0.0/autowisp/data_reduction/utils.py +545 -0
  30. autowisp-1.0.0/autowisp/database/__init__.py +0 -0
  31. autowisp-1.0.0/autowisp/database/autowisp.db +0 -0
  32. autowisp-1.0.0/autowisp/database/data_model/.pylintrc +537 -0
  33. autowisp-1.0.0/autowisp/database/data_model/__init__.py +88 -0
  34. autowisp-1.0.0/autowisp/database/data_model/base.py +29 -0
  35. autowisp-1.0.0/autowisp/database/data_model/condition.py +40 -0
  36. autowisp-1.0.0/autowisp/database/data_model/condition_expression.py +34 -0
  37. autowisp-1.0.0/autowisp/database/data_model/configuration.py +73 -0
  38. autowisp-1.0.0/autowisp/database/data_model/hdf5_attributes.py +90 -0
  39. autowisp-1.0.0/autowisp/database/data_model/hdf5_datasets.py +130 -0
  40. autowisp-1.0.0/autowisp/database/data_model/hdf5_links.py +61 -0
  41. autowisp-1.0.0/autowisp/database/data_model/hdf5_products.py +44 -0
  42. autowisp-1.0.0/autowisp/database/data_model/hdf5_structure_versions.py +46 -0
  43. autowisp-1.0.0/autowisp/database/data_model/image.py +186 -0
  44. autowisp-1.0.0/autowisp/database/data_model/image_type.py +37 -0
  45. autowisp-1.0.0/autowisp/database/data_model/input_master_types.py +60 -0
  46. autowisp-1.0.0/autowisp/database/data_model/light_curve_processing_progress.py +81 -0
  47. autowisp-1.0.0/autowisp/database/data_model/light_curve_status.py +38 -0
  48. autowisp-1.0.0/autowisp/database/data_model/master_files.py +119 -0
  49. autowisp-1.0.0/autowisp/database/data_model/meson.build +30 -0
  50. autowisp-1.0.0/autowisp/database/data_model/observing_session.py +96 -0
  51. autowisp-1.0.0/autowisp/database/data_model/processing_sequence.py +34 -0
  52. autowisp-1.0.0/autowisp/database/data_model/provenance/__init__.py +58 -0
  53. autowisp-1.0.0/autowisp/database/data_model/provenance/camera.py +56 -0
  54. autowisp-1.0.0/autowisp/database/data_model/provenance/camera_access.py +34 -0
  55. autowisp-1.0.0/autowisp/database/data_model/provenance/camera_channel.py +58 -0
  56. autowisp-1.0.0/autowisp/database/data_model/provenance/camera_type.py +45 -0
  57. autowisp-1.0.0/autowisp/database/data_model/provenance/meson.build +20 -0
  58. autowisp-1.0.0/autowisp/database/data_model/provenance/mount.py +54 -0
  59. autowisp-1.0.0/autowisp/database/data_model/provenance/mount_access.py +33 -0
  60. autowisp-1.0.0/autowisp/database/data_model/provenance/mount_type.py +33 -0
  61. autowisp-1.0.0/autowisp/database/data_model/provenance/observatory.py +42 -0
  62. autowisp-1.0.0/autowisp/database/data_model/provenance/observer.py +55 -0
  63. autowisp-1.0.0/autowisp/database/data_model/provenance/telescope.py +51 -0
  64. autowisp-1.0.0/autowisp/database/data_model/provenance/telescope_access.py +33 -0
  65. autowisp-1.0.0/autowisp/database/data_model/provenance/telescope_type.py +41 -0
  66. autowisp-1.0.0/autowisp/database/data_model/step_dependencies.py +71 -0
  67. autowisp-1.0.0/autowisp/database/data_model/steps_and_parameters.py +74 -0
  68. autowisp-1.0.0/autowisp/database/data_model/target.py +38 -0
  69. autowisp-1.0.0/autowisp/database/hdf5_file_structure.py +115 -0
  70. autowisp-1.0.0/autowisp/database/image_processing.py +1408 -0
  71. autowisp-1.0.0/autowisp/database/initialize_data_reduction_structure.py +1320 -0
  72. autowisp-1.0.0/autowisp/database/initialize_database.py +701 -0
  73. autowisp-1.0.0/autowisp/database/initialize_light_curve_structure.py +1061 -0
  74. autowisp-1.0.0/autowisp/database/interface.py +24 -0
  75. autowisp-1.0.0/autowisp/database/lightcurve_processing.py +602 -0
  76. autowisp-1.0.0/autowisp/database/manually_fill_tables.py +152 -0
  77. autowisp-1.0.0/autowisp/database/meson.build +21 -0
  78. autowisp-1.0.0/autowisp/database/processing.py +891 -0
  79. autowisp-1.0.0/autowisp/database/user_interface.py +678 -0
  80. autowisp-1.0.0/autowisp/diagnostics/detrending.py +168 -0
  81. autowisp-1.0.0/autowisp/diagnostics/meson.build +9 -0
  82. autowisp-1.0.0/autowisp/diagnostics/plot_lc.py +335 -0
  83. autowisp-1.0.0/autowisp/evaluator.py +154 -0
  84. autowisp-1.0.0/autowisp/fake_image/__init__.py +5 -0
  85. autowisp-1.0.0/autowisp/fake_image/raw.py +225 -0
  86. autowisp-1.0.0/autowisp/file_utilities.py +111 -0
  87. autowisp-1.0.0/autowisp/fit_expression/FitTermsLexer.py +570 -0
  88. autowisp-1.0.0/autowisp/fit_expression/FitTermsParser.py +914 -0
  89. autowisp-1.0.0/autowisp/fit_expression/FitTermsParserListener.py +71 -0
  90. autowisp-1.0.0/autowisp/fit_expression/FitTermsParserVisitor.py +44 -0
  91. autowisp-1.0.0/autowisp/fit_expression/__init__.py +7 -0
  92. autowisp-1.0.0/autowisp/fit_expression/count_terms_visitor.py +57 -0
  93. autowisp-1.0.0/autowisp/fit_expression/evaluate_terms_visitor.py +124 -0
  94. autowisp-1.0.0/autowisp/fit_expression/interface.py +69 -0
  95. autowisp-1.0.0/autowisp/fit_expression/iterative_fit.py +290 -0
  96. autowisp-1.0.0/autowisp/fit_expression/list_terms_visitor.py +82 -0
  97. autowisp-1.0.0/autowisp/fit_expression/meson.build +19 -0
  98. autowisp-1.0.0/autowisp/fit_expression/process_terms_visitor.py +180 -0
  99. autowisp-1.0.0/autowisp/fit_expression/used_var_finder.py +32 -0
  100. autowisp-1.0.0/autowisp/fits_utilities.py +186 -0
  101. autowisp-1.0.0/autowisp/hat/file_parsers.py +136 -0
  102. autowisp-1.0.0/autowisp/hat/header_util.py +7 -0
  103. autowisp-1.0.0/autowisp/hat/meson.build +9 -0
  104. autowisp-1.0.0/autowisp/hdf5_file.py +1338 -0
  105. autowisp-1.0.0/autowisp/image_calibration/__init__.py +15 -0
  106. autowisp-1.0.0/autowisp/image_calibration/calibrator.py +797 -0
  107. autowisp-1.0.0/autowisp/image_calibration/fits_util.py +340 -0
  108. autowisp-1.0.0/autowisp/image_calibration/mask_utilities.py +138 -0
  109. autowisp-1.0.0/autowisp/image_calibration/master_flat_maker.py +863 -0
  110. autowisp-1.0.0/autowisp/image_calibration/master_maker.py +441 -0
  111. autowisp-1.0.0/autowisp/image_calibration/meson.build +14 -0
  112. autowisp-1.0.0/autowisp/image_calibration/overscan_methods.py +330 -0
  113. autowisp-1.0.0/autowisp/image_smoothing.py +630 -0
  114. autowisp-1.0.0/autowisp/image_utilities.py +305 -0
  115. autowisp-1.0.0/autowisp/iterative_rejection_util.py +364 -0
  116. autowisp-1.0.0/autowisp/light_curves/__init__.py +0 -0
  117. autowisp-1.0.0/autowisp/light_curves/apply_correction.py +343 -0
  118. autowisp-1.0.0/autowisp/light_curves/collect_light_curves.py +177 -0
  119. autowisp-1.0.0/autowisp/light_curves/correction.py +312 -0
  120. autowisp-1.0.0/autowisp/light_curves/epd_correction.py +418 -0
  121. autowisp-1.0.0/autowisp/light_curves/hashable_array.py +64 -0
  122. autowisp-1.0.0/autowisp/light_curves/lc_data_io.py +1395 -0
  123. autowisp-1.0.0/autowisp/light_curves/lc_data_slice.py +163 -0
  124. autowisp-1.0.0/autowisp/light_curves/light_curve_file.py +705 -0
  125. autowisp-1.0.0/autowisp/light_curves/meson.build +19 -0
  126. autowisp-1.0.0/autowisp/light_curves/reconstructive_correction_transit.py +119 -0
  127. autowisp-1.0.0/autowisp/light_curves/tfa_correction.py +1147 -0
  128. autowisp-1.0.0/autowisp/light_curves/transit_model.py +40 -0
  129. autowisp-1.0.0/autowisp/lint_everything.sh +31 -0
  130. autowisp-1.0.0/autowisp/magnitude_fitting/__init__.py +11 -0
  131. autowisp-1.0.0/autowisp/magnitude_fitting/base.py +598 -0
  132. autowisp-1.0.0/autowisp/magnitude_fitting/check_mem_usage.sh +8 -0
  133. autowisp-1.0.0/autowisp/magnitude_fitting/iterative_refit.py +351 -0
  134. autowisp-1.0.0/autowisp/magnitude_fitting/linear.py +258 -0
  135. autowisp-1.0.0/autowisp/magnitude_fitting/master_photref_collector_grcollect.py +717 -0
  136. autowisp-1.0.0/autowisp/magnitude_fitting/master_photref_collector_zarr.py +702 -0
  137. autowisp-1.0.0/autowisp/magnitude_fitting/meson.build +14 -0
  138. autowisp-1.0.0/autowisp/magnitude_fitting/tests/__init__.py +8 -0
  139. autowisp-1.0.0/autowisp/magnitude_fitting/tests/test_data/tiny_mfit_stat.txt +10 -0
  140. autowisp-1.0.0/autowisp/magnitude_fitting/tests/test_data/tiny_mphotref.fits +0 -0
  141. autowisp-1.0.0/autowisp/magnitude_fitting/tests/test_mphotref_collector.py +615 -0
  142. autowisp-1.0.0/autowisp/magnitude_fitting/util.py +193 -0
  143. autowisp-1.0.0/autowisp/meson.build +38 -0
  144. autowisp-1.0.0/autowisp/miscellaneous.py +11 -0
  145. autowisp-1.0.0/autowisp/multiprocessing_util.py +172 -0
  146. autowisp-1.0.0/autowisp/piecewise_bicubic_psf_map.py +229 -0
  147. autowisp-1.0.0/autowisp/pipeline_exceptions.py +23 -0
  148. autowisp-1.0.0/autowisp/processing_steps/__init__.py +26 -0
  149. autowisp-1.0.0/autowisp/processing_steps/add_images_to_db.py +452 -0
  150. autowisp-1.0.0/autowisp/processing_steps/calculate_photref_merit.py +319 -0
  151. autowisp-1.0.0/autowisp/processing_steps/calibrate.py +339 -0
  152. autowisp-1.0.0/autowisp/processing_steps/create_lightcurves.py +397 -0
  153. autowisp-1.0.0/autowisp/processing_steps/epd.py +64 -0
  154. autowisp-1.0.0/autowisp/processing_steps/find_stars.py +166 -0
  155. autowisp-1.0.0/autowisp/processing_steps/fit_magnitudes.py +476 -0
  156. autowisp-1.0.0/autowisp/processing_steps/fit_source_extracted_psf_map.py +339 -0
  157. autowisp-1.0.0/autowisp/processing_steps/fit_star_shape.py +830 -0
  158. autowisp-1.0.0/autowisp/processing_steps/generate_epd_statistics.py +48 -0
  159. autowisp-1.0.0/autowisp/processing_steps/generate_tfa_statistics.py +48 -0
  160. autowisp-1.0.0/autowisp/processing_steps/lc_detrending.py +235 -0
  161. autowisp-1.0.0/autowisp/processing_steps/lc_detrending_argument_parser.py +590 -0
  162. autowisp-1.0.0/autowisp/processing_steps/manual_util.py +580 -0
  163. autowisp-1.0.0/autowisp/processing_steps/measure_aperture_photometry.py +262 -0
  164. autowisp-1.0.0/autowisp/processing_steps/meson.build +27 -0
  165. autowisp-1.0.0/autowisp/processing_steps/solve_astrometry.py +875 -0
  166. autowisp-1.0.0/autowisp/processing_steps/stack_to_master.py +240 -0
  167. autowisp-1.0.0/autowisp/processing_steps/stack_to_master_flat.py +515 -0
  168. autowisp-1.0.0/autowisp/processing_steps/tfa.py +85 -0
  169. autowisp-1.0.0/autowisp/processor.py +28 -0
  170. autowisp-1.0.0/autowisp/resources/dslr_subpixmap.fits +0 -0
  171. autowisp-1.0.0/autowisp/resources/meson.build +4 -0
  172. autowisp-1.0.0/autowisp/source_finder.py +184 -0
  173. autowisp-1.0.0/autowisp/source_finder_util.py +61 -0
  174. autowisp-1.0.0/autowisp/split_sources.py +197 -0
  175. autowisp-1.0.0/autowisp/tess_interface.py +143 -0
  176. autowisp-1.0.0/autowisp/tests/__init__.py +94 -0
  177. autowisp-1.0.0/autowisp/tests/__main__.py +51 -0
  178. autowisp-1.0.0/autowisp/tests/fits_test_case.py +83 -0
  179. autowisp-1.0.0/autowisp/tests/get_test_data.py +37 -0
  180. autowisp-1.0.0/autowisp/tests/h5_test_case.py +164 -0
  181. autowisp-1.0.0/autowisp/tests/meson.build +24 -0
  182. autowisp-1.0.0/autowisp/tests/test_calibrate.py +85 -0
  183. autowisp-1.0.0/autowisp/tests/test_create_lightcurves.py +28 -0
  184. autowisp-1.0.0/autowisp/tests/test_data/.gitignore +7 -0
  185. autowisp-1.0.0/autowisp/tests/test_data/process.sh +20 -0
  186. autowisp-1.0.0/autowisp/tests/test_data/test.cfg +71 -0
  187. autowisp-1.0.0/autowisp/tests/test_data/test_data.ipynb +440 -0
  188. autowisp-1.0.0/autowisp/tests/test_detrending_stat.py +51 -0
  189. autowisp-1.0.0/autowisp/tests/test_epd.py +20 -0
  190. autowisp-1.0.0/autowisp/tests/test_find_stars.py +18 -0
  191. autowisp-1.0.0/autowisp/tests/test_fit_magnitudes.py +20 -0
  192. autowisp-1.0.0/autowisp/tests/test_fit_source_extracted_psf_map.py +16 -0
  193. autowisp-1.0.0/autowisp/tests/test_fit_star_shape.py +18 -0
  194. autowisp-1.0.0/autowisp/tests/test_measure_aperture_photometry.py +25 -0
  195. autowisp-1.0.0/autowisp/tests/test_solve_astrometry.py +16 -0
  196. autowisp-1.0.0/autowisp/tests/test_stack_to_master.py +49 -0
  197. autowisp-1.0.0/autowisp/tests/test_tfa.py +20 -0
  198. autowisp-1.0.0/browser_interface/.gitignore +1 -0
  199. autowisp-1.0.0/browser_interface/configuration/__init__.py +0 -0
  200. autowisp-1.0.0/browser_interface/configuration/admin.py +3 -0
  201. autowisp-1.0.0/browser_interface/configuration/apps.py +6 -0
  202. autowisp-1.0.0/browser_interface/configuration/migrations/__init__.py +0 -0
  203. autowisp-1.0.0/browser_interface/configuration/models.py +3 -0
  204. autowisp-1.0.0/browser_interface/configuration/static/configuration/css/config_tree.css +58 -0
  205. autowisp-1.0.0/browser_interface/configuration/static/configuration/css/jquery.orgchart.css +866 -0
  206. autowisp-1.0.0/browser_interface/configuration/static/configuration/css/survey.css +61 -0
  207. autowisp-1.0.0/browser_interface/configuration/static/configuration/js/autowisp.config.tree.js +256 -0
  208. autowisp-1.0.0/browser_interface/configuration/static/configuration/js/test.js +30 -0
  209. autowisp-1.0.0/browser_interface/configuration/templates/configuration/config_tree.html +174 -0
  210. autowisp-1.0.0/browser_interface/configuration/templates/configuration/edit_survey.html +55 -0
  211. autowisp-1.0.0/browser_interface/configuration/templates/configuration/survey_class.html +202 -0
  212. autowisp-1.0.0/browser_interface/configuration/templates/configuration/survey_class_entries.html +82 -0
  213. autowisp-1.0.0/browser_interface/configuration/templates/configuration/survey_edit_item.html +85 -0
  214. autowisp-1.0.0/browser_interface/configuration/templates/configuration/survey_item_access.html +24 -0
  215. autowisp-1.0.0/browser_interface/configuration/templates/configuration/survey_item_entry.html +16 -0
  216. autowisp-1.0.0/browser_interface/configuration/templates/configuration/survey_item_noaccess.html +5 -0
  217. autowisp-1.0.0/browser_interface/configuration/tests.py +3 -0
  218. autowisp-1.0.0/browser_interface/configuration/urls.py +51 -0
  219. autowisp-1.0.0/browser_interface/configuration/views.py +477 -0
  220. autowisp-1.0.0/browser_interface/core/__init__.py +0 -0
  221. autowisp-1.0.0/browser_interface/core/admin.py +3 -0
  222. autowisp-1.0.0/browser_interface/core/apps.py +6 -0
  223. autowisp-1.0.0/browser_interface/core/migrations/__init__.py +0 -0
  224. autowisp-1.0.0/browser_interface/core/models.py +3 -0
  225. autowisp-1.0.0/browser_interface/core/templates/core/fits_app.html +156 -0
  226. autowisp-1.0.0/browser_interface/core/templates/core/lcars_app.html +114 -0
  227. autowisp-1.0.0/browser_interface/core/templates/core/plot_marker.html +33 -0
  228. autowisp-1.0.0/browser_interface/core/templatetags/__init__.py +0 -0
  229. autowisp-1.0.0/browser_interface/core/templatetags/custom_filters.py +15 -0
  230. autowisp-1.0.0/browser_interface/core/tests.py +3 -0
  231. autowisp-1.0.0/browser_interface/core/views.py +3 -0
  232. autowisp-1.0.0/browser_interface/django_project/__init__.py +0 -0
  233. autowisp-1.0.0/browser_interface/django_project/asgi.py +16 -0
  234. autowisp-1.0.0/browser_interface/django_project/settings.py +133 -0
  235. autowisp-1.0.0/browser_interface/django_project/urls.py +25 -0
  236. autowisp-1.0.0/browser_interface/django_project/wsgi.py +16 -0
  237. autowisp-1.0.0/browser_interface/manage.py +22 -0
  238. autowisp-1.0.0/browser_interface/processing/__init__.py +0 -0
  239. autowisp-1.0.0/browser_interface/processing/admin.py +3 -0
  240. autowisp-1.0.0/browser_interface/processing/apps.py +6 -0
  241. autowisp-1.0.0/browser_interface/processing/detrending_diagnostics_views.py +345 -0
  242. autowisp-1.0.0/browser_interface/processing/display_fits_util.py +37 -0
  243. autowisp-1.0.0/browser_interface/processing/log_views.py +182 -0
  244. autowisp-1.0.0/browser_interface/processing/migrations/__init__.py +0 -0
  245. autowisp-1.0.0/browser_interface/processing/models.py +3 -0
  246. autowisp-1.0.0/browser_interface/processing/progress_view.py +125 -0
  247. autowisp-1.0.0/browser_interface/processing/select_photref_views.py +341 -0
  248. autowisp-1.0.0/browser_interface/processing/select_raw_view.py +137 -0
  249. autowisp-1.0.0/browser_interface/processing/static/processing/css/detrending_diagnostics.css +58 -0
  250. autowisp-1.0.0/browser_interface/processing/static/processing/css/floating_params.css +30 -0
  251. autowisp-1.0.0/browser_interface/processing/static/processing/css/jquery.orgchart.css +897 -0
  252. autowisp-1.0.0/browser_interface/processing/static/processing/css/logs.css +43 -0
  253. autowisp-1.0.0/browser_interface/processing/static/processing/css/progress_bar.css +38 -0
  254. autowisp-1.0.0/browser_interface/processing/static/processing/css/select_images.css +28 -0
  255. autowisp-1.0.0/browser_interface/processing/static/processing/css/select_photref.css +20 -0
  256. autowisp-1.0.0/browser_interface/processing/static/processing/js/detrending.diagnostics.js +141 -0
  257. autowisp-1.0.0/browser_interface/processing/static/processing/js/review_output.js +54 -0
  258. autowisp-1.0.0/browser_interface/processing/static/processing/js/select.images.js +27 -0
  259. autowisp-1.0.0/browser_interface/processing/static/processing/js/select.photref.js +197 -0
  260. autowisp-1.0.0/browser_interface/processing/static/processing/js/tune.starfind.js +66 -0
  261. autowisp-1.0.0/browser_interface/processing/templates/processing/detrending_diagnostics.html +152 -0
  262. autowisp-1.0.0/browser_interface/processing/templates/processing/progress.html +177 -0
  263. autowisp-1.0.0/browser_interface/processing/templates/processing/review.html +155 -0
  264. autowisp-1.0.0/browser_interface/processing/templates/processing/review_single.html +108 -0
  265. autowisp-1.0.0/browser_interface/processing/templates/processing/select_photref_image.html +57 -0
  266. autowisp-1.0.0/browser_interface/processing/templates/processing/select_photref_target.html +39 -0
  267. autowisp-1.0.0/browser_interface/processing/templates/processing/select_raw_images.html +170 -0
  268. autowisp-1.0.0/browser_interface/processing/templates/processing/select_starfind_batch.html +44 -0
  269. autowisp-1.0.0/browser_interface/processing/templates/processing/tune_starfind.html +99 -0
  270. autowisp-1.0.0/browser_interface/processing/tests.py +3 -0
  271. autowisp-1.0.0/browser_interface/processing/tune_starfind_views.py +391 -0
  272. autowisp-1.0.0/browser_interface/processing/urls.py +119 -0
  273. autowisp-1.0.0/browser_interface/processing/views.py +45 -0
  274. autowisp-1.0.0/browser_interface/results/__init__.py +0 -0
  275. autowisp-1.0.0/browser_interface/results/admin.py +3 -0
  276. autowisp-1.0.0/browser_interface/results/apps.py +6 -0
  277. autowisp-1.0.0/browser_interface/results/lightcurve_views.py +651 -0
  278. autowisp-1.0.0/browser_interface/results/migrations/__init__.py +0 -0
  279. autowisp-1.0.0/browser_interface/results/models.py +3 -0
  280. autowisp-1.0.0/browser_interface/results/static/results/css/display_lightcurves.css +148 -0
  281. autowisp-1.0.0/browser_interface/results/static/results/js/display.lightcurves.js +802 -0
  282. autowisp-1.0.0/browser_interface/results/templates/results/curve_config.html +97 -0
  283. autowisp-1.0.0/browser_interface/results/templates/results/display_lightcurves.html +115 -0
  284. autowisp-1.0.0/browser_interface/results/templates/results/edit_model.html +52 -0
  285. autowisp-1.0.0/browser_interface/results/templates/results/param_table.html +39 -0
  286. autowisp-1.0.0/browser_interface/results/templates/results/rcParams_config.html +6 -0
  287. autowisp-1.0.0/browser_interface/results/templates/results/subplot_config.html +143 -0
  288. autowisp-1.0.0/browser_interface/results/tests.py +3 -0
  289. autowisp-1.0.0/browser_interface/results/urls.py +26 -0
  290. autowisp-1.0.0/browser_interface/results/views.py +13 -0
  291. autowisp-1.0.0/browser_interface/static/css/fits_app.css +25 -0
  292. autowisp-1.0.0/browser_interface/static/css/lcars.css +4634 -0
  293. autowisp-1.0.0/browser_interface/static/css/navbar.css +68 -0
  294. autowisp-1.0.0/browser_interface/static/css/style.css +60 -0
  295. autowisp-1.0.0/browser_interface/static/img/closed_lock_icon.jpg +0 -0
  296. autowisp-1.0.0/browser_interface/static/img/open_lock_icon.jpg +0 -0
  297. autowisp-1.0.0/browser_interface/static/js/autowisp.util.js +108 -0
  298. autowisp-1.0.0/browser_interface/static/js/display.fits.js +306 -0
  299. autowisp-1.0.0/browser_interface/static/js/jquery.min.js +4 -0
  300. autowisp-1.0.0/browser_interface/static/js/jquery.orgchart.js +1686 -0
  301. autowisp-1.0.0/docs/.DS_Store +0 -0
  302. autowisp-1.0.0/docs/.buildinfo +4 -0
  303. autowisp-1.0.0/docs/.nojekyll +0 -0
  304. autowisp-1.0.0/docs/PythonModules/contents.html +141 -0
  305. autowisp-1.0.0/docs/PythonModules/crash_recovery.html +183 -0
  306. autowisp-1.0.0/docs/PythonModules/design.html +150 -0
  307. autowisp-1.0.0/docs/PythonModules/image_calibration.html +138 -0
  308. autowisp-1.0.0/docs/PythonModules/logging.html +190 -0
  309. autowisp-1.0.0/docs/PythonModules/low_level_image_calibration.html +170 -0
  310. autowisp-1.0.0/docs/PythonModules/low_level_master_stack.html +337 -0
  311. autowisp-1.0.0/docs/_images/inheritance-06384889fcff262c5194638f4f0255405db72dfc.png +0 -0
  312. autowisp-1.0.0/docs/_images/inheritance-06384889fcff262c5194638f4f0255405db72dfc.png.map +3 -0
  313. autowisp-1.0.0/docs/_images/inheritance-2a200cecfa8fc8f62cb53daf43e40865854dd75e.png +0 -0
  314. autowisp-1.0.0/docs/_images/inheritance-2a200cecfa8fc8f62cb53daf43e40865854dd75e.png.map +10 -0
  315. autowisp-1.0.0/docs/_images/inheritance-32f3e76b28a43d04aec8d7215b5362e9f3adf6f2.png +0 -0
  316. autowisp-1.0.0/docs/_images/inheritance-32f3e76b28a43d04aec8d7215b5362e9f3adf6f2.png.map +3 -0
  317. autowisp-1.0.0/docs/_images/inheritance-3902a5d3471dc8b881e218fe8dcf8920fd23a610.png +0 -0
  318. autowisp-1.0.0/docs/_images/inheritance-3902a5d3471dc8b881e218fe8dcf8920fd23a610.png.map +6 -0
  319. autowisp-1.0.0/docs/_images/inheritance-3de7743c050384f41a2a782d11c3def447e8be6c.png +0 -0
  320. autowisp-1.0.0/docs/_images/inheritance-3de7743c050384f41a2a782d11c3def447e8be6c.png.map +5 -0
  321. autowisp-1.0.0/docs/_images/inheritance-46c0093157c336ea010d72695760eaa4862d9fa6.png +0 -0
  322. autowisp-1.0.0/docs/_images/inheritance-46c0093157c336ea010d72695760eaa4862d9fa6.png.map +3 -0
  323. autowisp-1.0.0/docs/_images/inheritance-480dbd19db5a6018df12668b3c5028911aa17981.png +0 -0
  324. autowisp-1.0.0/docs/_images/inheritance-480dbd19db5a6018df12668b3c5028911aa17981.png.map +3 -0
  325. autowisp-1.0.0/docs/_images/inheritance-5082eea9f2bb5a8b9fbcb1d0ba43a2c13d98f20c.png +0 -0
  326. autowisp-1.0.0/docs/_images/inheritance-5082eea9f2bb5a8b9fbcb1d0ba43a2c13d98f20c.png.map +4 -0
  327. autowisp-1.0.0/docs/_images/inheritance-5652a35038022601493926a5aa34ffb41b529f20.png +0 -0
  328. autowisp-1.0.0/docs/_images/inheritance-5652a35038022601493926a5aa34ffb41b529f20.png.map +3 -0
  329. autowisp-1.0.0/docs/_images/inheritance-5adf54a77e5b786a3cffde43e3f86c9ff4dd8578.png +0 -0
  330. autowisp-1.0.0/docs/_images/inheritance-5adf54a77e5b786a3cffde43e3f86c9ff4dd8578.png.map +7 -0
  331. autowisp-1.0.0/docs/_images/inheritance-5cc66647b2f2244d6b546e94b7295f25b39928f3.png +0 -0
  332. autowisp-1.0.0/docs/_images/inheritance-5cc66647b2f2244d6b546e94b7295f25b39928f3.png.map +3 -0
  333. autowisp-1.0.0/docs/_images/inheritance-684d1b71d15bc1e077cf63931b1fb071b8f34df2.png +0 -0
  334. autowisp-1.0.0/docs/_images/inheritance-684d1b71d15bc1e077cf63931b1fb071b8f34df2.png.map +3 -0
  335. autowisp-1.0.0/docs/_images/inheritance-6f839d86e1199ed0b60b28c46c6ea9187858b72e.png +0 -0
  336. autowisp-1.0.0/docs/_images/inheritance-6f839d86e1199ed0b60b28c46c6ea9187858b72e.png.map +3 -0
  337. autowisp-1.0.0/docs/_images/inheritance-95b295924eb0536bc57b2f2aa053d4efaaa4213c.png +0 -0
  338. autowisp-1.0.0/docs/_images/inheritance-95b295924eb0536bc57b2f2aa053d4efaaa4213c.png.map +3 -0
  339. autowisp-1.0.0/docs/_images/inheritance-a6659c3070230e1b8b24570d9b4e0e1411016188.png +0 -0
  340. autowisp-1.0.0/docs/_images/inheritance-a6659c3070230e1b8b24570d9b4e0e1411016188.png.map +6 -0
  341. autowisp-1.0.0/docs/_images/inheritance-aa60775180eb598fb57bd652d3df3d609dd3a92d.png +0 -0
  342. autowisp-1.0.0/docs/_images/inheritance-aa60775180eb598fb57bd652d3df3d609dd3a92d.png.map +5 -0
  343. autowisp-1.0.0/docs/_images/inheritance-b092d3c137a2db7fff1cc9f097fdf9e26ab39dc7.png +0 -0
  344. autowisp-1.0.0/docs/_images/inheritance-b092d3c137a2db7fff1cc9f097fdf9e26ab39dc7.png.map +9 -0
  345. autowisp-1.0.0/docs/_images/inheritance-b6f358b1b62016da016390305e77318d7188f3cf.png +0 -0
  346. autowisp-1.0.0/docs/_images/inheritance-b6f358b1b62016da016390305e77318d7188f3cf.png.map +5 -0
  347. autowisp-1.0.0/docs/_images/inheritance-cac29c3f800e935aa4214faf8a1d1362737266b7.png +0 -0
  348. autowisp-1.0.0/docs/_images/inheritance-cac29c3f800e935aa4214faf8a1d1362737266b7.png.map +3 -0
  349. autowisp-1.0.0/docs/_images/inheritance-cd8a7b94d4c5c9d64d15cbc38e6884e3e6ba220c.png +0 -0
  350. autowisp-1.0.0/docs/_images/inheritance-cd8a7b94d4c5c9d64d15cbc38e6884e3e6ba220c.png.map +3 -0
  351. autowisp-1.0.0/docs/_images/inheritance-d9ddb9821108f07fa66aaef7bacc77fb1f851040.png +0 -0
  352. autowisp-1.0.0/docs/_images/inheritance-d9ddb9821108f07fa66aaef7bacc77fb1f851040.png.map +12 -0
  353. autowisp-1.0.0/docs/_images/inheritance-dcc8bee185d3e9b3feacc189e0cf132e5bb4b4d0.png +0 -0
  354. autowisp-1.0.0/docs/_images/inheritance-dcc8bee185d3e9b3feacc189e0cf132e5bb4b4d0.png.map +5 -0
  355. autowisp-1.0.0/docs/_images/inheritance-dd8133a62532a727b13bdf15db6e35dbd4381e69.png +0 -0
  356. autowisp-1.0.0/docs/_images/inheritance-dd8133a62532a727b13bdf15db6e35dbd4381e69.png.map +3 -0
  357. autowisp-1.0.0/docs/_modules/index.html +97 -0
  358. autowisp-1.0.0/docs/_modules/superphot_pipeline/astrometry/transformation.html +288 -0
  359. autowisp-1.0.0/docs/_modules/superphot_pipeline/fake_image/raw.html +312 -0
  360. autowisp-1.0.0/docs/_modules/superphot_pipeline/hdf5_file.html +1774 -0
  361. autowisp-1.0.0/docs/_modules/superphot_pipeline/image_smoothing.html +686 -0
  362. autowisp-1.0.0/docs/_modules/superphot_pipeline/image_utilities.html +339 -0
  363. autowisp-1.0.0/docs/_modules/superphot_pipeline/iterative_rejection_util.html +321 -0
  364. autowisp-1.0.0/docs/_modules/superphot_pipeline/pipeline_exceptions.html +109 -0
  365. autowisp-1.0.0/docs/_modules/superphot_pipeline/processor.html +98 -0
  366. autowisp-1.0.0/docs/_sources/PythonModules/contents.rst.txt +8 -0
  367. autowisp-1.0.0/docs/_sources/PythonModules/crash_recovery.rst.txt +75 -0
  368. autowisp-1.0.0/docs/_sources/PythonModules/design.rst.txt +27 -0
  369. autowisp-1.0.0/docs/_sources/PythonModules/image_calibration.rst.txt +21 -0
  370. autowisp-1.0.0/docs/_sources/PythonModules/logging.rst.txt +72 -0
  371. autowisp-1.0.0/docs/_sources/PythonModules/low_level_image_calibration.rst.txt +57 -0
  372. autowisp-1.0.0/docs/_sources/PythonModules/low_level_master_stack.rst.txt +214 -0
  373. autowisp-1.0.0/docs/_sources/implementation/modules.rst.txt +7 -0
  374. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.astrometry.rst.txt +15 -0
  375. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.astrometry.transformation.rst.txt +7 -0
  376. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.fake_image.raw.rst.txt +7 -0
  377. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.fake_image.rst.txt +15 -0
  378. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.hdf5_file.rst.txt +7 -0
  379. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.calibrator.rst.txt +7 -0
  380. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.fits_util.rst.txt +7 -0
  381. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.mask_utilities.rst.txt +7 -0
  382. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.master_flat_maker.rst.txt +7 -0
  383. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.master_maker.rst.txt +7 -0
  384. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.overscan_methods.rst.txt +7 -0
  385. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_calibration.rst.txt +20 -0
  386. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_smoothing.rst.txt +7 -0
  387. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.image_utilities.rst.txt +7 -0
  388. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.iterative_rejection_util.rst.txt +7 -0
  389. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.pipeline_exceptions.rst.txt +7 -0
  390. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.processor.rst.txt +7 -0
  391. autowisp-1.0.0/docs/_sources/implementation/superphot_pipeline.rst.txt +29 -0
  392. autowisp-1.0.0/docs/_sources/index.rst.txt +22 -0
  393. autowisp-1.0.0/docs/_sources/processing_steps.rst.txt +302 -0
  394. autowisp-1.0.0/docs/_static/ajax-loader.gif +0 -0
  395. autowisp-1.0.0/docs/_static/basic.css +632 -0
  396. autowisp-1.0.0/docs/_static/comment-bright.png +0 -0
  397. autowisp-1.0.0/docs/_static/comment-close.png +0 -0
  398. autowisp-1.0.0/docs/_static/comment.png +0 -0
  399. autowisp-1.0.0/docs/_static/contents.png +0 -0
  400. autowisp-1.0.0/docs/_static/doctools.js +287 -0
  401. autowisp-1.0.0/docs/_static/down-pressed.png +0 -0
  402. autowisp-1.0.0/docs/_static/down.png +0 -0
  403. autowisp-1.0.0/docs/_static/file.png +0 -0
  404. autowisp-1.0.0/docs/_static/jquery-3.1.0.js +10074 -0
  405. autowisp-1.0.0/docs/_static/jquery.js +4 -0
  406. autowisp-1.0.0/docs/_static/minus.png +0 -0
  407. autowisp-1.0.0/docs/_static/navigation.png +0 -0
  408. autowisp-1.0.0/docs/_static/plus.png +0 -0
  409. autowisp-1.0.0/docs/_static/pygments.css +69 -0
  410. autowisp-1.0.0/docs/_static/searchtools.js +758 -0
  411. autowisp-1.0.0/docs/_static/sphinxdoc.css +345 -0
  412. autowisp-1.0.0/docs/_static/underscore-1.3.1.js +999 -0
  413. autowisp-1.0.0/docs/_static/underscore.js +31 -0
  414. autowisp-1.0.0/docs/_static/up-pressed.png +0 -0
  415. autowisp-1.0.0/docs/_static/up.png +0 -0
  416. autowisp-1.0.0/docs/_static/websupport.js +808 -0
  417. autowisp-1.0.0/docs/genindex.html +503 -0
  418. autowisp-1.0.0/docs/implementation/modules.html +170 -0
  419. autowisp-1.0.0/docs/implementation/superphot_pipeline.astrometry.html +267 -0
  420. autowisp-1.0.0/docs/implementation/superphot_pipeline.astrometry.transformation.html +257 -0
  421. autowisp-1.0.0/docs/implementation/superphot_pipeline.fake_image.html +363 -0
  422. autowisp-1.0.0/docs/implementation/superphot_pipeline.fake_image.raw.html +353 -0
  423. autowisp-1.0.0/docs/implementation/superphot_pipeline.hdf5_file.html +876 -0
  424. autowisp-1.0.0/docs/implementation/superphot_pipeline.html +210 -0
  425. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.calibrator.html +124 -0
  426. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.fits_util.html +124 -0
  427. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.html +143 -0
  428. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.mask_utilities.html +124 -0
  429. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.master_flat_maker.html +124 -0
  430. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.master_maker.html +124 -0
  431. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_calibration.overscan_methods.html +124 -0
  432. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_smoothing.html +800 -0
  433. autowisp-1.0.0/docs/implementation/superphot_pipeline.image_utilities.html +310 -0
  434. autowisp-1.0.0/docs/implementation/superphot_pipeline.iterative_rejection_util.html +264 -0
  435. autowisp-1.0.0/docs/implementation/superphot_pipeline.pipeline_exceptions.html +177 -0
  436. autowisp-1.0.0/docs/implementation/superphot_pipeline.processor.html +139 -0
  437. autowisp-1.0.0/docs/index.html +158 -0
  438. autowisp-1.0.0/docs/objects.inv +0 -0
  439. autowisp-1.0.0/docs/processing_steps.html +422 -0
  440. autowisp-1.0.0/docs/py-modindex.html +159 -0
  441. autowisp-1.0.0/docs/search.html +108 -0
  442. autowisp-1.0.0/docs/searchindex.js +1 -0
  443. autowisp-1.0.0/documentation/.DS_Store +0 -0
  444. autowisp-1.0.0/documentation/.gitignore +1 -0
  445. autowisp-1.0.0/documentation/Makefile +26 -0
  446. autowisp-1.0.0/documentation/UML_notation.png +0 -0
  447. autowisp-1.0.0/documentation/UML_notation_arrows.png +0 -0
  448. autowisp-1.0.0/documentation/make.bat +36 -0
  449. autowisp-1.0.0/documentation/source/.DS_Store +0 -0
  450. autowisp-1.0.0/documentation/source/.gitignore +1 -0
  451. autowisp-1.0.0/documentation/source/PhotometryPipelineDetailedDiagram.pdf +0 -0
  452. autowisp-1.0.0/documentation/source/PipelineDatabase.dia +0 -0
  453. autowisp-1.0.0/documentation/source/PipelineDatabaseUpgraded.dia +0 -0
  454. autowisp-1.0.0/documentation/source/PythonModules/GAIA_based_astrometry.rst +126 -0
  455. autowisp-1.0.0/documentation/source/PythonModules/contents.rst +12 -0
  456. autowisp-1.0.0/documentation/source/PythonModules/crash_recovery.rst +75 -0
  457. autowisp-1.0.0/documentation/source/PythonModules/design.rst +29 -0
  458. autowisp-1.0.0/documentation/source/PythonModules/image_calibration.rst +21 -0
  459. autowisp-1.0.0/documentation/source/PythonModules/logging.rst +73 -0
  460. autowisp-1.0.0/documentation/source/PythonModules/low_level_aperture_photometry.rst +65 -0
  461. autowisp-1.0.0/documentation/source/PythonModules/low_level_astrometry.rst +251 -0
  462. autowisp-1.0.0/documentation/source/PythonModules/low_level_image_calibration.rst +62 -0
  463. autowisp-1.0.0/documentation/source/PythonModules/low_level_master_stack.rst +253 -0
  464. autowisp-1.0.0/documentation/source/PythonModules/low_level_psf_fitting.rst +82 -0
  465. autowisp-1.0.0/documentation/source/_static/Makefile +4 -0
  466. autowisp-1.0.0/documentation/source/_static/example_structure.xml +181 -0
  467. autowisp-1.0.0/documentation/source/_static/hdf5_file_structure.xsl +151 -0
  468. autowisp-1.0.0/documentation/source/_static/tfa_speedup.tex +609 -0
  469. autowisp-1.0.0/documentation/source/_static/unlimited_width.css +3 -0
  470. autowisp-1.0.0/documentation/source/conf.py +237 -0
  471. autowisp-1.0.0/documentation/source/index.rst +65 -0
  472. autowisp-1.0.0/documentation/source/processing_steps.rst +302 -0
  473. autowisp-1.0.0/doxygen/Doxyfile +1890 -0
  474. autowisp-1.0.0/doxygen/DoxygenLayout.xml +233 -0
  475. autowisp-1.0.0/doxygen/py_filter.bash +3 -0
  476. autowisp-1.0.0/interesting_articles/Faraway_et_al-2016-Statistical_Analysis_and_Data_Mining%3A_The_ASA_Data_Science_Journal.pdf +0 -0
  477. autowisp-1.0.0/interesting_articles/README.rst +3 -0
  478. autowisp-1.0.0/interesting_articles/TFA_and_linear_fitting/Gu_and_Eisenstat_Downdating_SVD.pdf +0 -0
  479. autowisp-1.0.0/interesting_articles/TFA_and_linear_fitting/Gu_and_Eisenstat_Stable_and_Fast_Algorithm_for_Updating_SVD.pdf +0 -0
  480. autowisp-1.0.0/interesting_articles/TFA_and_linear_fitting/Zhang_et_al_Fast_and_Stable_Algorithm_for_Downdating_SVD.pdf +0 -0
  481. autowisp-1.0.0/meson.build +9 -0
  482. autowisp-1.0.0/pyproject.toml +99 -0
  483. autowisp-1.0.0/scripts/.gitignore +1 -0
  484. autowisp-1.0.0/scripts/FitTermsLexer.g4 +25 -0
  485. autowisp-1.0.0/scripts/FitTermsParser.g4 +33 -0
  486. autowisp-1.0.0/scripts/automateDb.py +19 -0
  487. autowisp-1.0.0/scripts/calibrate_source_extraction_flux.py +286 -0
  488. autowisp-1.0.0/scripts/changes_from_default_db.py +159 -0
  489. autowisp-1.0.0/scripts/command_line_util.py +81 -0
  490. autowisp-1.0.0/scripts/configparse.py +133 -0
  491. autowisp-1.0.0/scripts/configparse_orm.py +108 -0
  492. autowisp-1.0.0/scripts/create_snapshots.py +33 -0
  493. autowisp-1.0.0/scripts/document_hdf5_structure.py +57 -0
  494. autowisp-1.0.0/scripts/explore_shapefit_map.py +199 -0
  495. autowisp-1.0.0/scripts/export_lcs.py +122 -0
  496. autowisp-1.0.0/scripts/generate_fit_term_parser.sh +28 -0
  497. autowisp-1.0.0/scripts/mark_photometered_stars.py +143 -0
  498. autowisp-1.0.0/scripts/merge_psf_plots.py +49 -0
  499. autowisp-1.0.0/scripts/plot_detrending_stat.py +409 -0
  500. autowisp-1.0.0/scripts/plot_lc.py +189 -0
  501. autowisp-1.0.0/scripts/plot_lc_scatter.py +973 -0
  502. autowisp-1.0.0/scripts/read_config.py +108 -0
  503. autowisp-1.0.0/scripts/tune_source_extraction_flux.py +376 -0
  504. autowisp-1.0.0/scripts/unit_test_utils.py +78 -0
  505. autowisp-1.0.0/tests/__init__.py +0 -0
  506. autowisp-1.0.0/tests/plot_magfit.py +108 -0
  507. autowisp-1.0.0/tests/test_fit_terms_listeners.py +37 -0
  508. autowisp-1.0.0/tests/test_image_calibration.py +70 -0
  509. autowisp-1.0.0/tests/test_terms_expression.txt +1 -0
  510. autowisp-1.0.0/usage_examples/add_astrometry_to_dr.py +95 -0
  511. autowisp-1.0.0/usage_examples/create_lightcurves.py +44 -0
  512. autowisp-1.0.0/usage_examples/epd.py +93 -0
  513. autowisp-1.0.0/usage_examples/magfit.py +71 -0
  514. autowisp-1.0.0/usage_examples/tfa_example.py +71 -0
@@ -0,0 +1,49 @@
1
+ # This workflow will install Python dependencies, run tests and lint with a single version of Python
2
+ # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
3
+
4
+ name: Test pipeline steps
5
+
6
+ on: workflow_dispatch
7
+ # on:
8
+ # push:
9
+ # branches: [ "master" ]
10
+ # pull_request:
11
+ # branches: [ "master" ]
12
+
13
+ permissions:
14
+ contents: read
15
+
16
+ jobs:
17
+ tests:
18
+ runs-on: ${{ matrix.os }}
19
+ strategy:
20
+ matrix:
21
+ #os: [ubuntu-latest, windows-2022, macos-13, macos-14]
22
+ os: [macos-13]
23
+
24
+ steps:
25
+ - uses: actions/checkout@v4
26
+ - name: Set up Python 3.12
27
+ uses: actions/setup-python@v3
28
+ with:
29
+ python-version: "3.12"
30
+ - name: Install AutoWISP
31
+ run: |
32
+ python -m pip install --upgrade pip
33
+ python -m pip install --upgrade pylint
34
+ pip install .
35
+ - name: Lint with pylint
36
+ run: |
37
+ pylint --exit-zero .
38
+ - name: Run tests
39
+ run: |
40
+ python3 -m autowisp.tests failed_test
41
+ - name: Upload failed test
42
+ if: always()
43
+ uses: actions/upload-artifact@v4
44
+ with:
45
+ name: failed-test
46
+ path: failed_test
47
+ if-no-files-found: ignore
48
+ retention-days: 1
49
+ overwrite: true
@@ -0,0 +1,120 @@
1
+ #Manual
2
+ *.outerr
3
+ *.py-e
4
+ *.autosave
5
+ .DS_Store
6
+
7
+ # Ignore vim swap files
8
+ .*.swp
9
+ .*.swo
10
+
11
+ # Ignore debug files
12
+ *.out
13
+ *_structure.xml
14
+ *.pdf
15
+
16
+ # Byte-compiled / optimized / DLL files
17
+ __pycache__/
18
+ *.py[cod]
19
+ *$py.class
20
+
21
+ # C extensions
22
+ *.so
23
+
24
+ # Distribution / packaging
25
+ .Python
26
+ env/
27
+ build/
28
+ develop-eggs/
29
+ dist/
30
+ downloads/
31
+ eggs/
32
+ .eggs/
33
+ lib/
34
+ lib64/
35
+ parts/
36
+ sdist/
37
+ var/
38
+ wheels/
39
+ *.egg-info/
40
+ .installed.cfg
41
+ *.egg
42
+
43
+ # PyInstaller
44
+ # Usually these files are written by a python script from a template
45
+ # before PyInstaller builds the exe, so as to inject date/other infos into it.
46
+ *.manifest
47
+ *.spec
48
+
49
+ # Installer logs
50
+ pip-log.txt
51
+ pip-delete-this-directory.txt
52
+
53
+ # Unit test / coverage reports
54
+ htmlcov/
55
+ .tox/
56
+ .coverage
57
+ .coverage.*
58
+ .cache
59
+ nosetests.xml
60
+ coverage.xml
61
+ *.cover
62
+ .hypothesis/
63
+
64
+ # Translations
65
+ *.mo
66
+ *.pot
67
+
68
+ # Django stuff:
69
+ *.log
70
+ local_settings.py
71
+
72
+ # Flask stuff:
73
+ instance/
74
+ .webassets-cache
75
+
76
+ # Scrapy stuff:
77
+ .scrapy
78
+
79
+ # Sphinx documentation
80
+ docs/_build/
81
+
82
+ # PyBuilder
83
+ target/
84
+
85
+ # Jupyter Notebook
86
+ .ipynb_checkpoints
87
+
88
+ # pyenv
89
+ .python-version
90
+
91
+ # celery beat schedule file
92
+ celerybeat-schedule
93
+
94
+ # SageMath parsed files
95
+ *.sage.py
96
+
97
+ # dotenv
98
+ .env
99
+
100
+ # virtualenv
101
+ .venv
102
+ venv/
103
+ ENV/
104
+
105
+ # Spyder project settings
106
+ .spyderproject
107
+ .spyproject
108
+
109
+ # Rope project settings
110
+ .ropeproject
111
+
112
+ # mkdocs documentation
113
+ /site
114
+
115
+ # mypy
116
+ .mypy_cache/
117
+ -
118
+
119
+ # AppleDouble
120
+ .AppleDouble
@@ -0,0 +1,6 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <project version="4">
3
+ <component name="VcsDirectoryMappings">
4
+ <mapping directory="$PROJECT_DIR$" vcs="Git" />
5
+ </component>
6
+ </project>
@@ -0,0 +1,541 @@
1
+ [MASTER]
2
+
3
+ # A comma-separated list of package or module names from where C extensions may
4
+ # be loaded. Extensions are loading into the active Python interpreter and may
5
+ # run arbitrary code
6
+ extension-pkg-whitelist=lxml.etree
7
+
8
+ # Add files or directories to the blacklist. They should be base names, not
9
+ # paths.
10
+ ignore=CVS,Dump2hdf5.py,DbSource.py
11
+
12
+ # Add files or directories matching the regex patterns to the blacklist. The
13
+ # regex matches against base names, not paths.
14
+ ignore-patterns=
15
+
16
+ # Python code to execute, usually for sys.path manipulation such as
17
+ # pygtk.require().
18
+ init-hook='import sys; from os.path import expanduser; sys.path.append(expanduser("~/projects/git/poet/PythonPackage"))'
19
+
20
+ # Use multiple processes to speed up Pylint.
21
+ jobs=1
22
+
23
+ # List of plugins (as comma separated values of python modules names) to load,
24
+ # usually to register additional checkers.
25
+ load-plugins=
26
+
27
+ # Pickle collected data for later comparisons.
28
+ persistent=yes
29
+
30
+ # Specify a configuration file.
31
+ #rcfile=
32
+
33
+ # When enabled, pylint would attempt to guess common misconfiguration and emit
34
+ # user-friendly hints instead of false-positive error messages
35
+ suggestion-mode=yes
36
+
37
+ # Allow loading of arbitrary C extensions. Extensions are imported into the
38
+ # active Python interpreter and may run arbitrary code.
39
+ unsafe-load-any-extension=no
40
+
41
+
42
+ [MESSAGES CONTROL]
43
+
44
+ # Only show warnings with the listed confidence levels. Leave empty to show
45
+ # all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED
46
+ confidence=
47
+
48
+ # Disable the message, report, category or checker with the given id(s). You
49
+ # can either give multiple identifiers separated by comma (,) or put this
50
+ # option multiple times (only on the command line, not in the configuration
51
+ # file where it should appear only once).You can also use "--disable=all" to
52
+ # disable everything first and then reenable specific checks. For example, if
53
+ # you want to run only the similarities checker, you can use "--disable=all
54
+ # --enable=similarities". If you want to run only the classes checker, but have
55
+ # no Warning level messages displayed, use"--disable=all --enable=classes
56
+ # --disable=W"
57
+ disable=duplicate-code,
58
+ fixme
59
+ # print-statement,
60
+ # parameter-unpacking,
61
+ # unpacking-in-except,
62
+ # old-raise-syntax,
63
+ # backtick,
64
+ # long-suffix,
65
+ # old-ne-operator,
66
+ # old-octal-literal,
67
+ # import-star-module-level,
68
+ # non-ascii-bytes-literal,
69
+ # raw-checker-failed,
70
+ # bad-inline-option,
71
+ # locally-disabled,
72
+ # locally-enabled,
73
+ # file-ignored,
74
+ # suppressed-message,
75
+ # useless-suppression,
76
+ # deprecated-pragma,
77
+ # apply-builtin,
78
+ # basestring-builtin,
79
+ # buffer-builtin,
80
+ # cmp-builtin,
81
+ # coerce-builtin,
82
+ # execfile-builtin,
83
+ # file-builtin,
84
+ # long-builtin,
85
+ # raw_input-builtin,
86
+ # reduce-builtin,
87
+ # standarderror-builtin,
88
+ # unicode-builtin,
89
+ # xrange-builtin,
90
+ # coerce-method,
91
+ # delslice-method,
92
+ # getslice-method,
93
+ # setslice-method,
94
+ # no-absolute-import,
95
+ # old-division,
96
+ # dict-iter-method,
97
+ # dict-view-method,
98
+ # next-method-called,
99
+ # metaclass-assignment,
100
+ # indexing-exception,
101
+ # raising-string,
102
+ # reload-builtin,
103
+ # oct-method,
104
+ # hex-method,
105
+ # nonzero-method,
106
+ # cmp-method,
107
+ # input-builtin,
108
+ # round-builtin,
109
+ # intern-builtin,
110
+ # unichr-builtin,
111
+ # map-builtin-not-iterating,
112
+ # zip-builtin-not-iterating,
113
+ # range-builtin-not-iterating,
114
+ # filter-builtin-not-iterating,
115
+ # using-cmp-argument,
116
+ # eq-without-hash,
117
+ # div-method,
118
+ # idiv-method,
119
+ # rdiv-method,
120
+ # exception-message-attribute,
121
+ # invalid-str-codec,
122
+ # sys-max-int,
123
+ # bad-python3-import,
124
+ # deprecated-string-function,
125
+ # deprecated-str-translate-call,
126
+ # deprecated-itertools-function,
127
+ # deprecated-types-field,
128
+ # next-method-defined,
129
+ # dict-items-not-iterating,
130
+ # dict-keys-not-iterating,
131
+ # dict-values-not-iterating
132
+
133
+ # Enable the message, report, category or checker with the given id(s). You can
134
+ # either give multiple identifier separated by comma (,) or put this option
135
+ # multiple time (only on the command line, not in the configuration file where
136
+ # it should appear only once). See also the "--disable" option for examples.
137
+ enable=c-extension-no-member
138
+
139
+
140
+ [REPORTS]
141
+
142
+ # Python expression which should return a note less than 10 (10 is the highest
143
+ # note). You have access to the variables errors warning, statement which
144
+ # respectively contain the number of errors / warnings messages and the total
145
+ # number of statements analyzed. This is used by the global evaluation report
146
+ # (RP0004).
147
+ evaluation=10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10)
148
+
149
+ # Template used to display messages. This is a python new-style format string
150
+ # used to format the message information. See doc for all details
151
+ #msg-template=
152
+
153
+ # Set the output format. Available formats are text, parseable, colorized, json
154
+ # and msvs (visual studio).You can also give a reporter class, eg
155
+ # mypackage.mymodule.MyReporterClass.
156
+ output-format=text
157
+
158
+ # Tells whether to display a full report or only the messages
159
+ reports=no
160
+
161
+ # Activate the evaluation score.
162
+ score=yes
163
+
164
+
165
+ [REFACTORING]
166
+
167
+ # Maximum number of nested blocks for function / method body
168
+ max-nested-blocks=5
169
+
170
+
171
+ [BASIC]
172
+
173
+ # Naming style matching correct argument names
174
+ argument-naming-style=snake_case
175
+
176
+ # Regular expression matching correct argument names. Overrides argument-
177
+ # naming-style
178
+ #argument-rgx=
179
+
180
+ # Naming style matching correct attribute names
181
+ attr-naming-style=snake_case
182
+
183
+ # Regular expression matching correct attribute names. Overrides attr-naming-
184
+ # style
185
+ #attr-rgx=
186
+
187
+ # Bad variable names which should always be refused, separated by a comma
188
+ bad-names=foo,
189
+ bar,
190
+ baz,
191
+ toto,
192
+ tutu,
193
+ tata
194
+
195
+ # Naming style matching correct class attribute names
196
+ class-attribute-naming-style=any
197
+
198
+ # Regular expression matching correct class attribute names. Overrides class-
199
+ # attribute-naming-style
200
+ #class-attribute-rgx=
201
+
202
+ # Naming style matching correct class names
203
+ class-naming-style=PascalCase
204
+
205
+ # Regular expression matching correct class names. Overrides class-naming-style
206
+ #class-rgx=
207
+
208
+ # Naming style matching correct constant names
209
+ const-naming-style=UPPER_CASE
210
+
211
+ # Regular expression matching correct constant names. Overrides const-naming-
212
+ # style
213
+ const-rgx=[a-z\_][a-z0-9\_]{2,30}$
214
+
215
+ # Minimum line length for functions/classes that require docstrings, shorter
216
+ # ones are exempt.
217
+ docstring-min-length=-1
218
+
219
+ # Naming style matching correct function names
220
+ function-naming-style=snake_case
221
+
222
+ # Regular expression matching correct function names. Overrides function-
223
+ # naming-style
224
+ #function-rgx=
225
+
226
+ # Good variable names which should always be accepted, separated by a comma
227
+ good-names=i,
228
+ j,
229
+ k,
230
+ x,
231
+ y,
232
+ xi,
233
+ eta,
234
+ ra,
235
+ dec,
236
+ ex,
237
+ Run,
238
+ _
239
+
240
+ # Include a hint for the correct naming format with invalid-name
241
+ include-naming-hint=no
242
+
243
+ # Naming style matching correct inline iteration names
244
+ inlinevar-naming-style=any
245
+
246
+ # Regular expression matching correct inline iteration names. Overrides
247
+ # inlinevar-naming-style
248
+ #inlinevar-rgx=
249
+
250
+ # Naming style matching correct method names
251
+ method-naming-style=snake_case
252
+
253
+ # Regular expression matching correct method names. Overrides method-naming-
254
+ # style
255
+ #method-rgx=
256
+
257
+ # Naming style matching correct module names
258
+ module-naming-style=snake_case
259
+
260
+ # Regular expression matching correct module names. Overrides module-naming-
261
+ # style
262
+ #module-rgx=
263
+
264
+ # Colon-delimited sets of names that determine each other's naming style when
265
+ # the name regexes allow several styles.
266
+ name-group=
267
+
268
+ # Regular expression which should only match function or class names that do
269
+ # not require a docstring.
270
+ no-docstring-rgx=^_
271
+
272
+ # List of decorators that produce properties, such as abc.abstractproperty. Add
273
+ # to this list to register other decorators that produce valid properties.
274
+ property-classes=abc.abstractproperty
275
+
276
+ # Naming style matching correct variable names
277
+ variable-naming-style=snake_case
278
+
279
+ # Regular expression matching correct variable names. Overrides variable-
280
+ # naming-style
281
+ #variable-rgx=
282
+
283
+
284
+ [FORMAT]
285
+
286
+ # Expected format of line ending, e.g. empty (any line ending), LF or CRLF.
287
+ expected-line-ending-format=
288
+
289
+ # Regexp for a line that is allowed to be longer than the limit.
290
+ ignore-long-lines=^\s*(# )?<?https?://\S+>?$
291
+
292
+ # Number of spaces of indent required inside a hanging or continued line.
293
+ indent-after-paren=4
294
+
295
+ # String used as indentation unit. This is usually " " (4 spaces) or "\t" (1
296
+ # tab).
297
+ indent-string=' '
298
+
299
+ # Maximum number of characters on a single line.
300
+ max-line-length=80
301
+
302
+ # Maximum number of lines in a module
303
+ max-module-lines=1000
304
+
305
+ # List of optional constructs for which whitespace checking is disabled. `dict-
306
+ # separator` is used to allow tabulation in dicts, etc.: {1 : 1,\n222: 2}.
307
+ # `trailing-comma` allows a space between comma and closing bracket: (a, ).
308
+ # `empty-line` allows space-only lines.
309
+ #no-space-check=trailing-comma,
310
+ # dict-separator
311
+
312
+ # Allow the body of a class to be on the same line as the declaration if body
313
+ # contains single statement.
314
+ single-line-class-stmt=no
315
+
316
+ # Allow the body of an if to be on the same line as the test if there is no
317
+ # else.
318
+ single-line-if-stmt=no
319
+
320
+
321
+ [LOGGING]
322
+
323
+ # Logging modules to check that the string format arguments are in logging
324
+ # function parameter format
325
+ logging-modules=logging
326
+
327
+
328
+ [MISCELLANEOUS]
329
+
330
+ # List of note tags to take in consideration, separated by a comma.
331
+ notes=FIXME,
332
+ XXX,
333
+ TODO
334
+
335
+
336
+ [SIMILARITIES]
337
+
338
+ # Ignore comments when computing similarities.
339
+ ignore-comments=yes
340
+
341
+ # Ignore docstrings when computing similarities.
342
+ ignore-docstrings=yes
343
+
344
+ # Ignore imports when computing similarities.
345
+ ignore-imports=no
346
+
347
+ # Minimum lines number of a similarity.
348
+ min-similarity-lines=4
349
+
350
+
351
+ [SPELLING]
352
+
353
+ # Limits count of emitted suggestions for spelling mistakes
354
+ max-spelling-suggestions=4
355
+
356
+ # Spelling dictionary name. Available dictionaries: none. To make it working
357
+ # install python-enchant package.
358
+ spelling-dict=
359
+
360
+ # List of comma separated words that should not be checked.
361
+ spelling-ignore-words=
362
+
363
+ # A path to a file that contains private dictionary; one word per line.
364
+ spelling-private-dict-file=
365
+
366
+ # Tells whether to store unknown words to indicated private dictionary in
367
+ # --spelling-private-dict-file option instead of raising a message.
368
+ spelling-store-unknown-words=no
369
+
370
+
371
+ [TYPECHECK]
372
+
373
+ # List of decorators that produce context managers, such as
374
+ # contextlib.contextmanager. Add to this list to register other decorators that
375
+ # produce valid context managers.
376
+ contextmanager-decorators=contextlib.contextmanager
377
+
378
+ # List of members which are set dynamically and missed by pylint inference
379
+ # system, and so shouldn't trigger E1101 when accessed. Python regular
380
+ # expressions are accepted.
381
+ generated-members=
382
+
383
+ # Tells whether missing members accessed in mixin class should be ignored. A
384
+ # mixin class is detected if its name ends with "mixin" (case insensitive).
385
+ ignore-mixin-members=yes
386
+
387
+ # This flag controls whether pylint should warn about no-member and similar
388
+ # checks whenever an opaque object is returned when inferring. The inference
389
+ # can return multiple potential results while evaluating a Python object, but
390
+ # some branches might not be evaluated, which results in partial inference. In
391
+ # that case, it might be useful to still emit no-member and other checks for
392
+ # the rest of the inferred objects.
393
+ ignore-on-opaque-inference=yes
394
+
395
+ # List of class names for which member attributes should not be checked (useful
396
+ # for classes with dynamically set attributes). This supports the use of
397
+ # qualified names.
398
+ ignored-classes=optparse.Values,thread._local,_thread._local
399
+
400
+ # List of module names for which member attributes should not be checked
401
+ # (useful for modules/projects where namespaces are manipulated during runtime
402
+ # and thus existing member attributes cannot be deduced by static analysis. It
403
+ # supports qualified module names, as well as Unix pattern matching.
404
+ ignored-modules=numpy,scipy,astropy
405
+
406
+ # Show a hint with possible names when a member name was not found. The aspect
407
+ # of finding the hint is based on edit distance.
408
+ missing-member-hint=yes
409
+
410
+ # The minimum edit distance a name should have in order to be considered a
411
+ # similar match for a missing member name.
412
+ missing-member-hint-distance=1
413
+
414
+ # The total number of similar names that should be taken in consideration when
415
+ # showing a hint for a missing member.
416
+ missing-member-max-choices=1
417
+
418
+
419
+ [VARIABLES]
420
+
421
+ # List of additional names supposed to be defined in builtins. Remember that
422
+ # you should avoid to define new builtins when possible.
423
+ additional-builtins=
424
+
425
+ # Tells whether unused global variables should be treated as a violation.
426
+ allow-global-unused-variables=yes
427
+
428
+ # List of strings which can identify a callback function by name. A callback
429
+ # name must start or end with one of those strings.
430
+ callbacks=cb_,
431
+ _cb
432
+
433
+ # A regular expression matching the name of dummy variables (i.e. expectedly
434
+ # not used).
435
+ dummy-variables-rgx=_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_
436
+
437
+ # Argument names that match this expression will be ignored. Default to name
438
+ # with leading underscore
439
+ ignored-argument-names=_.*|^ignored_|^unused_
440
+
441
+ # Tells whether we should check for unused import in __init__ files.
442
+ init-import=no
443
+
444
+ # List of qualified module names which can have objects that can redefine
445
+ # builtins.
446
+ redefining-builtins-modules=six.moves,past.builtins,future.builtins
447
+
448
+
449
+ [CLASSES]
450
+
451
+ # List of method names used to declare (i.e. assign) instance attributes.
452
+ defining-attr-methods=__init__,
453
+ __new__,
454
+ setUp
455
+
456
+ # List of member names, which should be excluded from the protected access
457
+ # warning.
458
+ exclude-protected=_asdict,
459
+ _fields,
460
+ _replace,
461
+ _source,
462
+ _make
463
+
464
+ # List of valid names for the first argument in a class method.
465
+ valid-classmethod-first-arg=cls
466
+
467
+ # List of valid names for the first argument in a metaclass class method.
468
+ valid-metaclass-classmethod-first-arg=mcs
469
+
470
+
471
+ [DESIGN]
472
+
473
+ # Maximum number of arguments for function / method
474
+ max-args=5
475
+
476
+ # Maximum number of attributes for a class (see R0902).
477
+ max-attributes=7
478
+
479
+ # Maximum number of boolean expressions in a if statement
480
+ max-bool-expr=5
481
+
482
+ # Maximum number of branch for function / method body
483
+ max-branches=12
484
+
485
+ # Maximum number of locals for function / method body
486
+ max-locals=15
487
+
488
+ # Maximum number of parents for a class (see R0901).
489
+ max-parents=7
490
+
491
+ # Maximum number of public methods for a class (see R0904).
492
+ max-public-methods=20
493
+
494
+ # Maximum number of return / yield for function / method body
495
+ max-returns=6
496
+
497
+ # Maximum number of statements in function / method body
498
+ max-statements=50
499
+
500
+ # Minimum number of public methods for a class (see R0903).
501
+ min-public-methods=2
502
+
503
+
504
+ [IMPORTS]
505
+
506
+ # Allow wildcard imports from modules that define __all__.
507
+ allow-wildcard-with-all=no
508
+
509
+ # Analyse import fallback blocks. This can be used to support both Python 2 and
510
+ # 3 compatible code, which means that the block might have code that exists
511
+ # only in one or another interpreter, leading to false positives when analysed.
512
+ analyse-fallback-blocks=no
513
+
514
+ # Deprecated modules which should not be used, separated by a comma
515
+ deprecated-modules=optparse,tkinter.tix
516
+
517
+ # Create a graph of external dependencies in the given file (report RP0402 must
518
+ # not be disabled)
519
+ ext-import-graph=
520
+
521
+ # Create a graph of every (i.e. internal and external) dependencies in the
522
+ # given file (report RP0402 must not be disabled)
523
+ import-graph=
524
+
525
+ # Create a graph of internal dependencies in the given file (report RP0402 must
526
+ # not be disabled)
527
+ int-import-graph=
528
+
529
+ # Force import order to recognize a module as part of the standard
530
+ # compatibility libraries.
531
+ known-standard-library=
532
+
533
+ # Force import order to recognize a module as part of a third party library.
534
+ known-third-party=enchant
535
+
536
+
537
+ [EXCEPTIONS]
538
+
539
+ # Exceptions that will emit a warning when being caught. Defaults to
540
+ # "Exception"
541
+ overgeneral-exceptions=builtins.Exception
Binary file
Binary file