autots 0.0.2__tar.gz

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  1. AutoTS-0.0.2/.gitignore +104 -0
  2. AutoTS-0.0.2/AutoTS.egg-info/PKG-INFO +167 -0
  3. AutoTS-0.0.2/AutoTS.egg-info/SOURCES.txt +37 -0
  4. AutoTS-0.0.2/AutoTS.egg-info/dependency_links.txt +1 -0
  5. AutoTS-0.0.2/AutoTS.egg-info/requires.txt +9 -0
  6. AutoTS-0.0.2/AutoTS.egg-info/top_level.txt +1 -0
  7. AutoTS-0.0.2/LICENSE +21 -0
  8. AutoTS-0.0.2/MANIFEST.in +2 -0
  9. AutoTS-0.0.2/PKG-INFO +167 -0
  10. AutoTS-0.0.2/README.md +151 -0
  11. AutoTS-0.0.2/autots/__init__.py +16 -0
  12. AutoTS-0.0.2/autots/datasets/__init__.py +6 -0
  13. AutoTS-0.0.2/autots/datasets/_base.py +16 -0
  14. AutoTS-0.0.2/autots/datasets/data/toy_daily.csv +431 -0
  15. AutoTS-0.0.2/autots/datasets/fred.py +54 -0
  16. AutoTS-0.0.2/autots/evaluator/__init__.py +4 -0
  17. AutoTS-0.0.2/autots/evaluator/auto_model.py +633 -0
  18. AutoTS-0.0.2/autots/evaluator/auto_ts.py +478 -0
  19. AutoTS-0.0.2/autots/evaluator/metrics.py +156 -0
  20. AutoTS-0.0.2/autots/models/basics.py +211 -0
  21. AutoTS-0.0.2/autots/models/ensemble.py +158 -0
  22. AutoTS-0.0.2/autots/models/prophet.py +146 -0
  23. AutoTS-0.0.2/autots/models/sklearn.py +163 -0
  24. AutoTS-0.0.2/autots/models/statsmodels.py +332 -0
  25. AutoTS-0.0.2/autots/tools/__init__.py +3 -0
  26. AutoTS-0.0.2/autots/tools/holiday.py +40 -0
  27. AutoTS-0.0.2/autots/tools/impute.py +105 -0
  28. AutoTS-0.0.2/autots/tools/probabilistic.py +102 -0
  29. AutoTS-0.0.2/autots/tools/profile.py +25 -0
  30. AutoTS-0.0.2/autots/tools/shaping.py +254 -0
  31. AutoTS-0.0.2/autots/tools/transform.py +416 -0
  32. AutoTS-0.0.2/docs/Makefile +20 -0
  33. AutoTS-0.0.2/docs/conf.py +55 -0
  34. AutoTS-0.0.2/docs/index.rst +20 -0
  35. AutoTS-0.0.2/docs/make.bat +35 -0
  36. AutoTS-0.0.2/setup.cfg +4 -0
  37. AutoTS-0.0.2/setup.py +34 -0
  38. AutoTS-0.0.2/standalone.py +1826 -0
  39. AutoTS-0.0.2/test.py +82 -0
@@ -0,0 +1,104 @@
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+ # Byte-compiled / optimized / DLL files
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+ __pycache__/
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+ *.py[cod]
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+ *$py.class
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+
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+ # C extensions
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+ *.so
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+
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+ # Distribution / packaging
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+ .Python
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+ build/
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+ develop-eggs/
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+ dist/
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+ downloads/
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+ eggs/
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+ .eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ wheels/
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+ *.egg-info/
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+ .installed.cfg
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+ *.egg
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+ MANIFEST
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+
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+ # PyInstaller
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+ # Usually these files are written by a python script from a template
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+ # before PyInstaller builds the exe, so as to inject date/other infos into it.
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+ *.manifest
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+ *.spec
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+
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+ # Installer logs
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+ pip-log.txt
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+ pip-delete-this-directory.txt
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+
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+ # Unit test / coverage reports
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+ htmlcov/
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+ .tox/
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+ .coverage
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+ .coverage.*
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+ .cache
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+ nosetests.xml
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+ coverage.xml
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+ *.cover
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+ .hypothesis/
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+ .pytest_cache/
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+
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+ # Translations
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+ *.mo
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+ *.pot
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+
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+ # Django stuff:
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+ *.log
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+ local_settings.py
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+ db.sqlite3
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+
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+ # Flask stuff:
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+ instance/
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+ .webassets-cache
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+
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+ # Scrapy stuff:
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+ .scrapy
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+
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+ # Sphinx documentation
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+ docs/_build/
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+
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+ # PyBuilder
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+ target/
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+
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+ # Jupyter Notebook
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+ .ipynb_checkpoints
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+
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+ # pyenv
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+ .python-version
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+
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+ # celery beat schedule file
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+ celerybeat-schedule
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+
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+ # SageMath parsed files
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+ *.sage.py
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+
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+ # Environments
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+ .env
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+ .venv
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+ env/
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+ venv/
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+ ENV/
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+ env.bak/
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+ venv.bak/
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+
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+ # Spyder project settings
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+ .spyderproject
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+ .spyproject
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+
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+ # Rope project settings
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+ .ropeproject
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+
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+ # mkdocs documentation
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+ /site
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+
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+ # mypy
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+ .mypy_cache/
@@ -0,0 +1,167 @@
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+ Metadata-Version: 2.1
2
+ Name: AutoTS
3
+ Version: 0.0.2
4
+ Summary: Automated Time Series Forecasting
5
+ Home-page: https://github.com/winedarksea/AutoTS
6
+ Author: Colin Catlin
7
+ Author-email: colin.catlin@syllepsis.live
8
+ License: MIT
9
+ Description: # AutoTS
10
+ Unstable prototype: version 0.0.2
11
+ ### Project CATS (Catlin Automated Time Series)
12
+ (or maybe eventually: Clustered Automated Time Series)
13
+ #### Model Selection for Multiple Time Series
14
+
15
+ Simple package for comparing and predicting with open-source time series implementations.
16
+ For other time series needs, check out the package list here: https://github.com/MaxBenChrist/awesome_time_series_in_python
17
+
18
+ `pip install autots`
19
+ #### Requirements:
20
+ Python >= 3.5 (typing) >= 3.6 (GluonTS)
21
+ pandas
22
+ sklearn >= 0.20.0 (ColumnTransformer)
23
+ statsmodels
24
+ holidays
25
+
26
+ `pip install autots['additional models']`
27
+ #### Requirements
28
+ fbprophet
29
+ fredapi (example datasets)
30
+
31
+ ## Basic Use
32
+ Input data is expected to come in a 'long' format with three columns: Date (ideally already in pd.DateTime format), Value, and Series ID. the column name for each of these is passed to .fit(). For a single time series, series_id can be = None.
33
+
34
+ ```
35
+ from autots.datasets import load_toy_daily
36
+ df_long = load_toy_daily()
37
+
38
+ from autots import AutoTS
39
+ model = AutoTS(forecast_length = 14, frequency = 'infer',
40
+ prediction_interval = 0.9, ensemble = True, weighted = False,
41
+ max_generations = 5, num_validations = 2, validation_method = 'even')
42
+ model = model.fit(df_long, date_col = 'date', value_col = 'value', id_col = 'series_id' )
43
+
44
+ # Print the name of the best mode
45
+ print(model.best_model['Model'].iloc[0])
46
+
47
+ prediction = model.predict()
48
+ # point forecasts dataframe
49
+ forecasts_df = prediction.forecast
50
+ # accuracy of all tried model results (not including cross validation)
51
+ model_results = model.main_results.model_results
52
+ ```
53
+
54
+ ## Underlying Process
55
+ AutoTS works in the following way at present:
56
+ * It begins by taking long data and converting it to a wide dataframe with DateTimeIndex
57
+ * An initial train/test split is generated where the test is the most recent data, of forecast_length
58
+ * A random template of models is generated and tested on the initial train/test
59
+ * Models consist of a pre-transformation step (fill na options, outlier removal options, etc), and algorithm (ie ETS) and model paramters (trend, damped, etc)
60
+ * The top models (selected by a combination of SMAPE, MAE, RMSE) are recombined with random mutations for n_generations
61
+ * A handful of the best models from this process go to cross validation, where they are re-assessed on new train/test splits.
62
+ * The best model in validation is selected as best_model and used in the .predict() method to generate forecasts.
63
+
64
+ ## Caveats and Advice
65
+
66
+ #### Short Training History
67
+ How much data is 'too little' depends on the seasonality and volatility of the data.
68
+ But less than half a year of daily data or less than two years of monthly data are both going to be tight.
69
+ Minimal training data most greatly impacts the ability to do proper cross validation. Set num_validations = 0 in such cases.
70
+ Since ensembles are based on the test dataset, it would also be wise to set ensemble = False if num_validations = 0.
71
+
72
+ #### Too much training data.
73
+ Too much data is already handled to some extent by 'context_slicer' in the transformations, which tests using less training data.
74
+ That said, large datasets will be slower and more memory intensive, for high frequency data (say hourly) it can often be advisable to roll that up to a higher level (daily, hourly, etc.).
75
+ Rollup can be accomplished by specifying the frequency = your rollup frequency, and then setting the agg_func = 'sum' or 'mean' or other appropriate statistic.
76
+
77
+ #### Lots of NaN in data
78
+ Various NaN filling techniques are tested in the transformation. Rolling up data to a lower frequency may also help deal with NaNs.
79
+
80
+ #### More than one preord regressor
81
+ 'Preord' regressor stands for 'Preordained' regressor, to make it clear this is data that will be know with high certainy about the future.
82
+ Such data about the future is rare, one example might be number of stores that will be (planned to be) open each given day in the future when forecast sales.
83
+ Since many algorithms do not handle more than one regressor, only one is handled here. If you would like to use more than one,
84
+ manually select the best variable or use dimensionality reduction to reduce the features to one dimension.
85
+ However, the model can handle quite a lot of parallel time series. Additional regressors can be passed through as additional time series to forecast.
86
+ The regression models here can utilize the information they provide to help improve forecast quality.
87
+ To prevent forecast accuracy for considering these additional series too heavily, input series weights that lower or remove their forecast accuracy from consideration.
88
+
89
+ #### Categorical Data
90
+ Categorical data is handled, but it is handled poorly. For example, optimization metrics do not currently include any categorical accuracy metrics.
91
+ For categorical data that has a meaningful order (ie 'low', 'medium', 'high') it is best for the user to encode that data before passing it in,
92
+ thus properly capturing the relative sequence (ie 'low' = 1, 'medium' = 2, 'high' = 3).
93
+
94
+ #### Custom Metrics
95
+ Implementing new metrics is rather difficult. However the internal 'Score' that compares models can easily be adjusted by passing through custom metric weights.
96
+ Higher weighting increases the importance of that metric.
97
+ `metric_weighting = {'smape_weighting' : 9, 'mae_weighting' : 1, 'rmse_weighting' : 5, 'containment_weighting' : 1, 'runtime_weighting' : 0.5}`
98
+ sMAPE is generally the most versatile across multiple series, but doesn't handle forecasts with lots of zeroes well.
99
+ Contaiment measures the percent of test data that falls between the upper and lower forecasts.
100
+
101
+ ## To-Do
102
+ * Smaller
103
+ * Recombine best two of each model, if two or more present
104
+ * Duplicates still seem to be occurring in the genetic template runs
105
+ * Inf appearing in MAE and RMSE (possibly all NaN in test)
106
+ * Na Tolerance for test in simple_train_test_split
107
+ * Relative/Absolute Imports and reduce package reloading
108
+ * User regressor to sklearn model regression_type
109
+ * Import/export template
110
+ * ARIMA + Detrend fails
111
+ * Things needing testing:
112
+ * Confirm per_series weighting works properly
113
+ * Passing in Start Dates - (Test)
114
+ * Different frequencies
115
+ * Various verbose inputs
116
+ * Test holidays on non-daily data
117
+ * Handle categorical forecasts where forecast leaves known values
118
+ * Speed improvements, Profiling, Parallelization, and Distributed options for general greater speed
119
+ * Generate list of functional frequences, and improve usability on rarer frequenices
120
+ * Warning/handling if lots of NaN in most recent (test) part of data
121
+ * Figures: Add option to output figures of train/test + forecast, other performance figures
122
+ * Input and Output saved templates as .csv and .json
123
+ * 'Check Package' to check if optional model packages are installed
124
+ * Pre-clustering on many time series
125
+ * If all input are Int, convert floats back to int
126
+ * Trim whitespace on string inputs
127
+ * Hierachial correction (bottom-up to start with)
128
+ * Improved verbosity controls and options. Replace most 'print' with logging.
129
+ * Export as simpler code (as TPOT)
130
+ * AIC metric, other accuracy metrics
131
+ * Analyze and return inaccuracy patterns (most inaccurate periods out, days of week, most inaccurate series)
132
+ * Used saved results to resume a search partway through
133
+ * Generally improved probabilistic forecasting
134
+ * Option to drop series which haven't had a value in last N days
135
+ * Option to change which metric is being used for model selections
136
+ * Use quantile of training data to provide upper/lower forecast for Last Value Naive (so upper forecast might be 95th percentile largest number)
137
+ * More thorough use of setting random seed
138
+ * For monthly data account for number of days in month
139
+ * Option to run generations until generations no longer see improvement of at least X % over n generations
140
+
141
+ #### New Ensembles:
142
+ best 3 (unique algorithms not just variations)
143
+ forecast distance 30/30/30
144
+ best per series ensemble
145
+ best point with best probalistic containment
146
+ #### New models:
147
+ Seasonal Naive
148
+ Last Value + Drift Naive
149
+ Simple Decomposition forecasting
150
+ GluonTS Models
151
+ Simulations
152
+ Sklearn + TSFresh
153
+ Sklearn + polynomial features
154
+ Sktime
155
+ Ta-lib
156
+ tslearn
157
+ pydlm
158
+ Isotonic regression
159
+ TPOT if it adds multioutput functionality
160
+
161
+ Platform: UNKNOWN
162
+ Classifier: Programming Language :: Python :: 3
163
+ Classifier: License :: OSI Approved :: MIT License
164
+ Classifier: Operating System :: OS Independent
165
+ Requires-Python: >=3.6
166
+ Description-Content-Type: text/markdown
167
+ Provides-Extra: additional models
@@ -0,0 +1,37 @@
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+ .gitignore
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+ LICENSE
3
+ MANIFEST.in
4
+ README.md
5
+ setup.py
6
+ standalone.py
7
+ test.py
8
+ AutoTS.egg-info/PKG-INFO
9
+ AutoTS.egg-info/SOURCES.txt
10
+ AutoTS.egg-info/dependency_links.txt
11
+ AutoTS.egg-info/requires.txt
12
+ AutoTS.egg-info/top_level.txt
13
+ autots/__init__.py
14
+ autots/datasets/__init__.py
15
+ autots/datasets/_base.py
16
+ autots/datasets/fred.py
17
+ autots/datasets/data/toy_daily.csv
18
+ autots/evaluator/__init__.py
19
+ autots/evaluator/auto_model.py
20
+ autots/evaluator/auto_ts.py
21
+ autots/evaluator/metrics.py
22
+ autots/models/basics.py
23
+ autots/models/ensemble.py
24
+ autots/models/prophet.py
25
+ autots/models/sklearn.py
26
+ autots/models/statsmodels.py
27
+ autots/tools/__init__.py
28
+ autots/tools/holiday.py
29
+ autots/tools/impute.py
30
+ autots/tools/probabilistic.py
31
+ autots/tools/profile.py
32
+ autots/tools/shaping.py
33
+ autots/tools/transform.py
34
+ docs/Makefile
35
+ docs/conf.py
36
+ docs/index.rst
37
+ docs/make.bat
@@ -0,0 +1,9 @@
1
+ numpy
2
+ pandas
3
+ statsmodels
4
+ scikit-learn
5
+ holidays
6
+
7
+ [additional models]
8
+ fbprophet
9
+ fredapi
@@ -0,0 +1 @@
1
+ autots
AutoTS-0.0.2/LICENSE ADDED
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2019 Colin Catlin
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
@@ -0,0 +1,2 @@
1
+ include autots/datasets/data/*.csv
2
+ include README.md LICENSE
AutoTS-0.0.2/PKG-INFO ADDED
@@ -0,0 +1,167 @@
1
+ Metadata-Version: 2.1
2
+ Name: AutoTS
3
+ Version: 0.0.2
4
+ Summary: Automated Time Series Forecasting
5
+ Home-page: https://github.com/winedarksea/AutoTS
6
+ Author: Colin Catlin
7
+ Author-email: colin.catlin@syllepsis.live
8
+ License: MIT
9
+ Description: # AutoTS
10
+ Unstable prototype: version 0.0.2
11
+ ### Project CATS (Catlin Automated Time Series)
12
+ (or maybe eventually: Clustered Automated Time Series)
13
+ #### Model Selection for Multiple Time Series
14
+
15
+ Simple package for comparing and predicting with open-source time series implementations.
16
+ For other time series needs, check out the package list here: https://github.com/MaxBenChrist/awesome_time_series_in_python
17
+
18
+ `pip install autots`
19
+ #### Requirements:
20
+ Python >= 3.5 (typing) >= 3.6 (GluonTS)
21
+ pandas
22
+ sklearn >= 0.20.0 (ColumnTransformer)
23
+ statsmodels
24
+ holidays
25
+
26
+ `pip install autots['additional models']`
27
+ #### Requirements
28
+ fbprophet
29
+ fredapi (example datasets)
30
+
31
+ ## Basic Use
32
+ Input data is expected to come in a 'long' format with three columns: Date (ideally already in pd.DateTime format), Value, and Series ID. the column name for each of these is passed to .fit(). For a single time series, series_id can be = None.
33
+
34
+ ```
35
+ from autots.datasets import load_toy_daily
36
+ df_long = load_toy_daily()
37
+
38
+ from autots import AutoTS
39
+ model = AutoTS(forecast_length = 14, frequency = 'infer',
40
+ prediction_interval = 0.9, ensemble = True, weighted = False,
41
+ max_generations = 5, num_validations = 2, validation_method = 'even')
42
+ model = model.fit(df_long, date_col = 'date', value_col = 'value', id_col = 'series_id' )
43
+
44
+ # Print the name of the best mode
45
+ print(model.best_model['Model'].iloc[0])
46
+
47
+ prediction = model.predict()
48
+ # point forecasts dataframe
49
+ forecasts_df = prediction.forecast
50
+ # accuracy of all tried model results (not including cross validation)
51
+ model_results = model.main_results.model_results
52
+ ```
53
+
54
+ ## Underlying Process
55
+ AutoTS works in the following way at present:
56
+ * It begins by taking long data and converting it to a wide dataframe with DateTimeIndex
57
+ * An initial train/test split is generated where the test is the most recent data, of forecast_length
58
+ * A random template of models is generated and tested on the initial train/test
59
+ * Models consist of a pre-transformation step (fill na options, outlier removal options, etc), and algorithm (ie ETS) and model paramters (trend, damped, etc)
60
+ * The top models (selected by a combination of SMAPE, MAE, RMSE) are recombined with random mutations for n_generations
61
+ * A handful of the best models from this process go to cross validation, where they are re-assessed on new train/test splits.
62
+ * The best model in validation is selected as best_model and used in the .predict() method to generate forecasts.
63
+
64
+ ## Caveats and Advice
65
+
66
+ #### Short Training History
67
+ How much data is 'too little' depends on the seasonality and volatility of the data.
68
+ But less than half a year of daily data or less than two years of monthly data are both going to be tight.
69
+ Minimal training data most greatly impacts the ability to do proper cross validation. Set num_validations = 0 in such cases.
70
+ Since ensembles are based on the test dataset, it would also be wise to set ensemble = False if num_validations = 0.
71
+
72
+ #### Too much training data.
73
+ Too much data is already handled to some extent by 'context_slicer' in the transformations, which tests using less training data.
74
+ That said, large datasets will be slower and more memory intensive, for high frequency data (say hourly) it can often be advisable to roll that up to a higher level (daily, hourly, etc.).
75
+ Rollup can be accomplished by specifying the frequency = your rollup frequency, and then setting the agg_func = 'sum' or 'mean' or other appropriate statistic.
76
+
77
+ #### Lots of NaN in data
78
+ Various NaN filling techniques are tested in the transformation. Rolling up data to a lower frequency may also help deal with NaNs.
79
+
80
+ #### More than one preord regressor
81
+ 'Preord' regressor stands for 'Preordained' regressor, to make it clear this is data that will be know with high certainy about the future.
82
+ Such data about the future is rare, one example might be number of stores that will be (planned to be) open each given day in the future when forecast sales.
83
+ Since many algorithms do not handle more than one regressor, only one is handled here. If you would like to use more than one,
84
+ manually select the best variable or use dimensionality reduction to reduce the features to one dimension.
85
+ However, the model can handle quite a lot of parallel time series. Additional regressors can be passed through as additional time series to forecast.
86
+ The regression models here can utilize the information they provide to help improve forecast quality.
87
+ To prevent forecast accuracy for considering these additional series too heavily, input series weights that lower or remove their forecast accuracy from consideration.
88
+
89
+ #### Categorical Data
90
+ Categorical data is handled, but it is handled poorly. For example, optimization metrics do not currently include any categorical accuracy metrics.
91
+ For categorical data that has a meaningful order (ie 'low', 'medium', 'high') it is best for the user to encode that data before passing it in,
92
+ thus properly capturing the relative sequence (ie 'low' = 1, 'medium' = 2, 'high' = 3).
93
+
94
+ #### Custom Metrics
95
+ Implementing new metrics is rather difficult. However the internal 'Score' that compares models can easily be adjusted by passing through custom metric weights.
96
+ Higher weighting increases the importance of that metric.
97
+ `metric_weighting = {'smape_weighting' : 9, 'mae_weighting' : 1, 'rmse_weighting' : 5, 'containment_weighting' : 1, 'runtime_weighting' : 0.5}`
98
+ sMAPE is generally the most versatile across multiple series, but doesn't handle forecasts with lots of zeroes well.
99
+ Contaiment measures the percent of test data that falls between the upper and lower forecasts.
100
+
101
+ ## To-Do
102
+ * Smaller
103
+ * Recombine best two of each model, if two or more present
104
+ * Duplicates still seem to be occurring in the genetic template runs
105
+ * Inf appearing in MAE and RMSE (possibly all NaN in test)
106
+ * Na Tolerance for test in simple_train_test_split
107
+ * Relative/Absolute Imports and reduce package reloading
108
+ * User regressor to sklearn model regression_type
109
+ * Import/export template
110
+ * ARIMA + Detrend fails
111
+ * Things needing testing:
112
+ * Confirm per_series weighting works properly
113
+ * Passing in Start Dates - (Test)
114
+ * Different frequencies
115
+ * Various verbose inputs
116
+ * Test holidays on non-daily data
117
+ * Handle categorical forecasts where forecast leaves known values
118
+ * Speed improvements, Profiling, Parallelization, and Distributed options for general greater speed
119
+ * Generate list of functional frequences, and improve usability on rarer frequenices
120
+ * Warning/handling if lots of NaN in most recent (test) part of data
121
+ * Figures: Add option to output figures of train/test + forecast, other performance figures
122
+ * Input and Output saved templates as .csv and .json
123
+ * 'Check Package' to check if optional model packages are installed
124
+ * Pre-clustering on many time series
125
+ * If all input are Int, convert floats back to int
126
+ * Trim whitespace on string inputs
127
+ * Hierachial correction (bottom-up to start with)
128
+ * Improved verbosity controls and options. Replace most 'print' with logging.
129
+ * Export as simpler code (as TPOT)
130
+ * AIC metric, other accuracy metrics
131
+ * Analyze and return inaccuracy patterns (most inaccurate periods out, days of week, most inaccurate series)
132
+ * Used saved results to resume a search partway through
133
+ * Generally improved probabilistic forecasting
134
+ * Option to drop series which haven't had a value in last N days
135
+ * Option to change which metric is being used for model selections
136
+ * Use quantile of training data to provide upper/lower forecast for Last Value Naive (so upper forecast might be 95th percentile largest number)
137
+ * More thorough use of setting random seed
138
+ * For monthly data account for number of days in month
139
+ * Option to run generations until generations no longer see improvement of at least X % over n generations
140
+
141
+ #### New Ensembles:
142
+ best 3 (unique algorithms not just variations)
143
+ forecast distance 30/30/30
144
+ best per series ensemble
145
+ best point with best probalistic containment
146
+ #### New models:
147
+ Seasonal Naive
148
+ Last Value + Drift Naive
149
+ Simple Decomposition forecasting
150
+ GluonTS Models
151
+ Simulations
152
+ Sklearn + TSFresh
153
+ Sklearn + polynomial features
154
+ Sktime
155
+ Ta-lib
156
+ tslearn
157
+ pydlm
158
+ Isotonic regression
159
+ TPOT if it adds multioutput functionality
160
+
161
+ Platform: UNKNOWN
162
+ Classifier: Programming Language :: Python :: 3
163
+ Classifier: License :: OSI Approved :: MIT License
164
+ Classifier: Operating System :: OS Independent
165
+ Requires-Python: >=3.6
166
+ Description-Content-Type: text/markdown
167
+ Provides-Extra: additional models
AutoTS-0.0.2/README.md ADDED
@@ -0,0 +1,151 @@
1
+ # AutoTS
2
+ Unstable prototype: version 0.0.2
3
+ ### Project CATS (Catlin Automated Time Series)
4
+ (or maybe eventually: Clustered Automated Time Series)
5
+ #### Model Selection for Multiple Time Series
6
+
7
+ Simple package for comparing and predicting with open-source time series implementations.
8
+ For other time series needs, check out the package list here: https://github.com/MaxBenChrist/awesome_time_series_in_python
9
+
10
+ `pip install autots`
11
+ #### Requirements:
12
+ Python >= 3.5 (typing) >= 3.6 (GluonTS)
13
+ pandas
14
+ sklearn >= 0.20.0 (ColumnTransformer)
15
+ statsmodels
16
+ holidays
17
+
18
+ `pip install autots['additional models']`
19
+ #### Requirements
20
+ fbprophet
21
+ fredapi (example datasets)
22
+
23
+ ## Basic Use
24
+ Input data is expected to come in a 'long' format with three columns: Date (ideally already in pd.DateTime format), Value, and Series ID. the column name for each of these is passed to .fit(). For a single time series, series_id can be = None.
25
+
26
+ ```
27
+ from autots.datasets import load_toy_daily
28
+ df_long = load_toy_daily()
29
+
30
+ from autots import AutoTS
31
+ model = AutoTS(forecast_length = 14, frequency = 'infer',
32
+ prediction_interval = 0.9, ensemble = True, weighted = False,
33
+ max_generations = 5, num_validations = 2, validation_method = 'even')
34
+ model = model.fit(df_long, date_col = 'date', value_col = 'value', id_col = 'series_id' )
35
+
36
+ # Print the name of the best mode
37
+ print(model.best_model['Model'].iloc[0])
38
+
39
+ prediction = model.predict()
40
+ # point forecasts dataframe
41
+ forecasts_df = prediction.forecast
42
+ # accuracy of all tried model results (not including cross validation)
43
+ model_results = model.main_results.model_results
44
+ ```
45
+
46
+ ## Underlying Process
47
+ AutoTS works in the following way at present:
48
+ * It begins by taking long data and converting it to a wide dataframe with DateTimeIndex
49
+ * An initial train/test split is generated where the test is the most recent data, of forecast_length
50
+ * A random template of models is generated and tested on the initial train/test
51
+ * Models consist of a pre-transformation step (fill na options, outlier removal options, etc), and algorithm (ie ETS) and model paramters (trend, damped, etc)
52
+ * The top models (selected by a combination of SMAPE, MAE, RMSE) are recombined with random mutations for n_generations
53
+ * A handful of the best models from this process go to cross validation, where they are re-assessed on new train/test splits.
54
+ * The best model in validation is selected as best_model and used in the .predict() method to generate forecasts.
55
+
56
+ ## Caveats and Advice
57
+
58
+ #### Short Training History
59
+ How much data is 'too little' depends on the seasonality and volatility of the data.
60
+ But less than half a year of daily data or less than two years of monthly data are both going to be tight.
61
+ Minimal training data most greatly impacts the ability to do proper cross validation. Set num_validations = 0 in such cases.
62
+ Since ensembles are based on the test dataset, it would also be wise to set ensemble = False if num_validations = 0.
63
+
64
+ #### Too much training data.
65
+ Too much data is already handled to some extent by 'context_slicer' in the transformations, which tests using less training data.
66
+ That said, large datasets will be slower and more memory intensive, for high frequency data (say hourly) it can often be advisable to roll that up to a higher level (daily, hourly, etc.).
67
+ Rollup can be accomplished by specifying the frequency = your rollup frequency, and then setting the agg_func = 'sum' or 'mean' or other appropriate statistic.
68
+
69
+ #### Lots of NaN in data
70
+ Various NaN filling techniques are tested in the transformation. Rolling up data to a lower frequency may also help deal with NaNs.
71
+
72
+ #### More than one preord regressor
73
+ 'Preord' regressor stands for 'Preordained' regressor, to make it clear this is data that will be know with high certainy about the future.
74
+ Such data about the future is rare, one example might be number of stores that will be (planned to be) open each given day in the future when forecast sales.
75
+ Since many algorithms do not handle more than one regressor, only one is handled here. If you would like to use more than one,
76
+ manually select the best variable or use dimensionality reduction to reduce the features to one dimension.
77
+ However, the model can handle quite a lot of parallel time series. Additional regressors can be passed through as additional time series to forecast.
78
+ The regression models here can utilize the information they provide to help improve forecast quality.
79
+ To prevent forecast accuracy for considering these additional series too heavily, input series weights that lower or remove their forecast accuracy from consideration.
80
+
81
+ #### Categorical Data
82
+ Categorical data is handled, but it is handled poorly. For example, optimization metrics do not currently include any categorical accuracy metrics.
83
+ For categorical data that has a meaningful order (ie 'low', 'medium', 'high') it is best for the user to encode that data before passing it in,
84
+ thus properly capturing the relative sequence (ie 'low' = 1, 'medium' = 2, 'high' = 3).
85
+
86
+ #### Custom Metrics
87
+ Implementing new metrics is rather difficult. However the internal 'Score' that compares models can easily be adjusted by passing through custom metric weights.
88
+ Higher weighting increases the importance of that metric.
89
+ `metric_weighting = {'smape_weighting' : 9, 'mae_weighting' : 1, 'rmse_weighting' : 5, 'containment_weighting' : 1, 'runtime_weighting' : 0.5}`
90
+ sMAPE is generally the most versatile across multiple series, but doesn't handle forecasts with lots of zeroes well.
91
+ Contaiment measures the percent of test data that falls between the upper and lower forecasts.
92
+
93
+ ## To-Do
94
+ * Smaller
95
+ * Recombine best two of each model, if two or more present
96
+ * Duplicates still seem to be occurring in the genetic template runs
97
+ * Inf appearing in MAE and RMSE (possibly all NaN in test)
98
+ * Na Tolerance for test in simple_train_test_split
99
+ * Relative/Absolute Imports and reduce package reloading
100
+ * User regressor to sklearn model regression_type
101
+ * Import/export template
102
+ * ARIMA + Detrend fails
103
+ * Things needing testing:
104
+ * Confirm per_series weighting works properly
105
+ * Passing in Start Dates - (Test)
106
+ * Different frequencies
107
+ * Various verbose inputs
108
+ * Test holidays on non-daily data
109
+ * Handle categorical forecasts where forecast leaves known values
110
+ * Speed improvements, Profiling, Parallelization, and Distributed options for general greater speed
111
+ * Generate list of functional frequences, and improve usability on rarer frequenices
112
+ * Warning/handling if lots of NaN in most recent (test) part of data
113
+ * Figures: Add option to output figures of train/test + forecast, other performance figures
114
+ * Input and Output saved templates as .csv and .json
115
+ * 'Check Package' to check if optional model packages are installed
116
+ * Pre-clustering on many time series
117
+ * If all input are Int, convert floats back to int
118
+ * Trim whitespace on string inputs
119
+ * Hierachial correction (bottom-up to start with)
120
+ * Improved verbosity controls and options. Replace most 'print' with logging.
121
+ * Export as simpler code (as TPOT)
122
+ * AIC metric, other accuracy metrics
123
+ * Analyze and return inaccuracy patterns (most inaccurate periods out, days of week, most inaccurate series)
124
+ * Used saved results to resume a search partway through
125
+ * Generally improved probabilistic forecasting
126
+ * Option to drop series which haven't had a value in last N days
127
+ * Option to change which metric is being used for model selections
128
+ * Use quantile of training data to provide upper/lower forecast for Last Value Naive (so upper forecast might be 95th percentile largest number)
129
+ * More thorough use of setting random seed
130
+ * For monthly data account for number of days in month
131
+ * Option to run generations until generations no longer see improvement of at least X % over n generations
132
+
133
+ #### New Ensembles:
134
+ best 3 (unique algorithms not just variations)
135
+ forecast distance 30/30/30
136
+ best per series ensemble
137
+ best point with best probalistic containment
138
+ #### New models:
139
+ Seasonal Naive
140
+ Last Value + Drift Naive
141
+ Simple Decomposition forecasting
142
+ GluonTS Models
143
+ Simulations
144
+ Sklearn + TSFresh
145
+ Sklearn + polynomial features
146
+ Sktime
147
+ Ta-lib
148
+ tslearn
149
+ pydlm
150
+ Isotonic regression
151
+ TPOT if it adds multioutput functionality