autogaita 1.0.5__tar.gz → 1.0.6__tar.gz

{autogaita-1.0.5 → autogaita-1.0.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: autogaita
-Version: 1.0.5
+Version: 1.0.6
 Summary: Automatic Gait Analysis in Python. A toolbox to streamline and standardise the analysis of kinematics across species after ML-based body posture tracking. Despite being optimised for gait analyses, AutoGaitA has the potential to be used for any kind of kinematic analysis.
 Home-page: https://github.com/mahan-hosseini/AutoGaitA/
 Author: Mahan Hosseini

autogaita-1.0.6/autogaita/batchrun_scripts/group_universal3Drun.py

@@ -0,0 +1,139 @@
+import autogaita
+
+
+def group_universal3Drun():
+    """
+    Batchrun script to run AutoGaitA Group for Results obtained with AutoGaitA Universal 3D.
+    folderinfo & cfg dictionaries must be configured as explained in our documentation. See the "AutoGaitA without the GUI" section of our documentation for references to in-depth explanations to all dictionary keys (note that each key of dicts corresponds to some object in the AutoGaitA Group GUI)
+    """
+    # loop over legs - currently no option to do both legs in a single run
+    cfg = {}
+    # folderinfo
+    # => Note that length of folderinfo's group_names & group_dirs lists determines #    how many groups are compared.
+    # => Also note that indices must correspond (i.e., idx #    1's name will be #    used for dataset stored in group_dir's idx 1)
+    folderinfo = {}
+    folderinfo["group_names"] = [
+        "crawling",
+        "sideways",
+        "walking",
+        "jogging",
+        "jumping_jack",
+        "vertical_jumping",
+    ]
+    folderinfo["group_dirs"] = [
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/crawling/Results/",
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/sideways/Results/",
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/walking/Results/",
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/jogging/Results/",
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/jumping_jack/Results/",
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/vertical_jumping/Results/",
+    ]
+    folderinfo["results_dir"] = (
+        "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/group/"
+    )
+    folderinfo["load_dir"] = ""
+    # cfg
+    cfg["do_permtest"] = True
+    cfg["do_anova"] = True
+    cfg["permutation_number"] = 10000
+    cfg["PCA_n_components"] = 10
+    cfg["PCA_custom_scatter_PCs"] = ""
+    cfg["PCA_save_3D_video"] = True
+    cfg["PCA_bins"] = ""
+    cfg["stats_threshold"] = 0.05
+    cfg["plot_SE"] = False
+    cfg["color_palette"] = "Set2"
+    cfg["legend_outside"] = True
+    cfg["dont_show_plots"] = True
+    cfg["anova_design"] = "Mixed ANOVA"
+    cfg["which_leg"] = "right"
+    cfg["PCA_variables"] = [
+        "Head Y",
+        "Head Z",
+        "Hip Y",
+        "Hip Z",
+        "Pelvis Y",
+        "Pelvis Z",
+        "Thorax Y",
+        "Thorax Z",
+        "Ankle, left Y",
+        "Ankle, left Z",
+        "Elbow, left Y",
+        "Elbow, left Z",
+        "Hip, left Y",
+        "Hip, left Z",
+        "Hand, left Y",
+        "Hand, left Z",
+        "Knee, left Y",
+        "Knee, left Z",
+        "Shoulder, left Y",
+        "Shoulder, left Z",
+        "Wrist, left Y",
+        "Wrist, left Z",
+        "Foot, left Y",
+        "Foot, left Z",
+        "Ankle, right Y",
+        "Ankle, right Z",
+        "Elbow, right Y",
+        "Elbow, right Z",
+        "Hip, right Y",
+        "Hip, right Z",
+        "Hand, right Y",
+        "Hand, right Z",
+        "Knee, right Y",
+        "Knee, right Z",
+        "Shoulder, right Y",
+        "Shoulder, right Z",
+        "Wrist, right Y",
+        "Wrist, right Z",
+        "Foot, right Y",
+        "Foot, right Z",
+        "Ankle, left Angle",
+        "Knee, left Angle",
+        "Elbow, left Angle",
+        "Foot, left Velocity",
+        "Foot, left Acceleration",
+        "Ankle, left Velocity",
+        "Ankle, left Acceleration",
+        "Knee, left Velocity",
+        "Knee, left Acceleration",
+        "Hip Velocity",
+        "Hip Acceleration",
+        "Pelvis Velocity",
+        "Pelvis Acceleration",
+        "Shoulder, left Velocity",
+        "Shoulder, left Acceleration",
+        "Head Velocity",
+        "Head Acceleration",
+        "Ankle, left Angle Velocity",
+        "Ankle, left Angle Acceleration",
+        "Knee, left Angle Velocity",
+        "Knee, left Angle Acceleration",
+        "Elbow, left Angle Velocity",
+        "Elbow, left Angle Acceleration",
+        "Ankle, right Angle",
+        "Knee, right Angle",
+        "Elbow, right Angle",
+        "Foot, right Velocity",
+        "Foot, right Acceleration",
+        "Ankle, right Velocity",
+        "Ankle, right Acceleration",
+        "Knee, right Velocity",
+        "Knee, right Acceleration",
+        "Shoulder, right Velocity",
+        "Shoulder, right Acceleration",
+        "Ankle, right Angle Velocity",
+        "Ankle, right Angle Acceleration",
+        "Knee, right Angle Velocity",
+        "Knee, right Angle Acceleration",
+        "Elbow, right Angle Velocity",
+        "Elbow, right Angle Acceleration",
+    ]
+    cfg["stats_variables"] = []
+    # run
+    autogaita.group(folderinfo, cfg)
+
+
+# %% what happens if we just hit run
+if __name__ == "__main__":
+    group_universal3Drun()

autogaita-1.0.5/autogaita/batchrun_scripts/group_universal3Drun.py → autogaita-1.0.6/autogaita/batchrun_scripts/group_universal3Drun_backup.py

@@ -29,6 +29,8 @@ def group_universal3Drun():
         cfg["do_anova"] = True
         cfg["permutation_number"] = 10
         cfg["PCA_n_components"] = 3
+        cfg["PCA_custom_scatter_PCs"] = ""
+        cfg["PCA_bins"] = ""
         cfg["PCA_save_3D_video"] = False
         cfg["stats_threshold"] = 0.05
         cfg["plot_SE"] = False

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/batchrun_scripts/universal3D_multirun.py

@@ -24,11 +24,16 @@ def universal3D_multirun():
     cfg["angular_acceleration"] = True
     cfg["bin_num"] = 25
     cfg["plot_SE"] = True
-    cfg["normalise_height_at_SC_level"] = True
+    cfg["standardise_z_at_SC_level"] = True
+    cfg["standardise_z_to_a_joint"] = True
+    cfg["z_standardisation_joint"] = ["Foot, left"]
     cfg["plot_joint_number"] = 7
     cfg["color_palette"] = "viridis"
     cfg["legend_outside"] = True
+    cfg["flip_gait_direction"] = False
     cfg["analyse_average_y"] = True
+    cfg["standardise_y_coordinates"] = True
+    cfg["y_standardisation_joint"] = ["Foot"]
     cfg["joints"] = ["Midfoot", "Ankle", "Knee", "Hip", "Pelvis", "Shoulder", "Neck"]
     cfg["angles"] = {
         "name": ["Ankle", "Knee"],

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/batchrun_scripts/universal3D_singlerun.py

@@ -23,11 +23,16 @@ def universal3D_singlerun():
     cfg["angular_acceleration"] = True
     cfg["bin_num"] = 25
     cfg["plot_SE"] = True
-    cfg["normalise_height_at_SC_level"] = True
+    cfg["standardise_z_at_SC_level"] = True
+    cfg["standardise_z_to_a_joint"] = True
+    cfg["z_standardisation_joint"] = ["Midfoot"]
     cfg["plot_joint_number"] = 5
     cfg["color_palette"] = "Set2"
     cfg["legend_outside"] = True
-    cfg["analyse_average_y"] = False
+    cfg["flip_gait_direction"] = False
+    cfg["analyse_average_y"] = True
+    cfg["standardise_y_coordinates"] = True
+    cfg["y_standardisation_joint"] = ["Midfoot"]
     cfg["joints"] = [
         # "R1-ThCx",
         "Midfoot",

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/common2D/common2D_3_analysis.py

@@ -63,6 +63,9 @@ def analyse_and_export_stepcycles(data, all_cycles, info, cfg):
     # 2 or more steps - build dataframe
     elif len(all_cycles) > 1:
         # first- step is added manually
+        # NOTE
+        # ----
+        # normalised_steps_data is created using x_standardised_steps_data or first_step
         first_step = data_copy.loc[all_cycles[0][0] : all_cycles[0][1]]
         if standardise_x_coordinates:
             all_steps_data, x_standardised_steps_data = (
@@ -181,20 +184,20 @@ def standardise_x_y_and_add_features_to_one_step(step, cfg):
         step_copy[y_cols] -= this_y_min
     # if no x-standardisation, just add features & return non-(x-)normalised step
     if cfg["standardise_x_coordinates"] is False:
-        non_norm_step = add_features(step_copy, cfg)
-        return non_norm_step
+        non_stand_step = add_features(step_copy, cfg)
+        return non_stand_step
         # else standardise x (horizontal dimension) at step-cycle level too
     else:
-        non_norm_step = add_features(step_copy, cfg)
-        x_norm_step = step_copy.copy()
-        x_cols = [col for col in x_norm_step.columns if col.endswith("x")]
+        non_stand_step = add_features(step_copy, cfg)
+        x_stand_step = step_copy.copy()
+        x_cols = [col for col in x_stand_step.columns if col.endswith("x")]
         # note the [0] here is important because it's still a list of len=1!!
-        min_x_standardisation_joint = x_norm_step[
+        min_x_standardisation_joint = x_stand_step[
             cfg["x_standardisation_joint"][0] + "x"
         ].min()
-        x_norm_step[x_cols] -= min_x_standardisation_joint
-        x_norm_step = add_features(x_norm_step, cfg)
-        return non_norm_step, x_norm_step
+        x_stand_step[x_cols] -= min_x_standardisation_joint
+        x_stand_step = add_features(x_stand_step, cfg)
+        return non_stand_step, x_stand_step
 
 
 def add_features(step, cfg):

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/dlc/dlc_1_preparation.py

@@ -169,7 +169,7 @@ def some_prep(info, folderinfo, cfg):
     beam_hind_jointadd = cfg["beam_hind_jointadd"]
     beam_fore_jointadd = cfg["beam_fore_jointadd"]
     direction_joint = cfg["direction_joint"]
-    # important to unpack to vars hand not to cfg since cfg is overwritten in multiruns!
+    # important to unpack to vars and not to cfg since cfg is overwritten in multiruns!
     x_standardisation_joint = cfg["x_standardisation_joint"][0]
     y_standardisation_joint = cfg["y_standardisation_joint"][0]
     # store config json file @ group path

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/group/group_1_preparation.py

@@ -54,7 +54,7 @@ def some_prep(folderinfo, cfg):
     # => use this and just return the cfg
     # => make sure to write folderinfo["contrast"] manually above as is and then return
     #    that folderinfo plus the cfg you load from the file
-    if folderinfo["load_dir"]:
+    if len(folderinfo["load_dir"]) > 0:
         with open(
             os.path.join(folderinfo["load_dir"], CONFIG_JSON_FILENAME), "r"
         ) as config_json_file:

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/group/group_3_PCA.py

@@ -218,6 +218,8 @@ def run_PCA(PCA_df, features, cfg):
     # excel files)
     x = pd.DataFrame(x, columns=features)
     # NOTE that this next line changes the PCA_model variable!
+    # pdb.set_trace()
+    x.fillna(0, inplace=True)
     PCs = PCA_model.fit_transform(x)
     # NOTE! we use number_of_PCs from here onwards (in info/plots/etc) to differentiate
     #       between n_components which can be smaller than 1!

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/gui/dlc_gui.py

@@ -198,11 +198,13 @@ def run_dlc_gui():
         WIDGET_CFG,
     )
     convert_checkbox.configure(
-        command=lambda: gui_utils.change_ratio_entry_state(cfg, ratio_entry),
+        command=lambda: gui_utils.change_widget_state_based_on_checkbox(
+            cfg, "convert_to_mm", ratio_entry
+        ),
     )
     convert_checkbox.grid(row=2, column=0, columnspan=2, sticky="w")
 
-    # ratio  label
+    # ratio label
     ratio_entry = ctk.CTkEntry(
         root,
         textvariable=cfg["pixel_to_mm_ratio"],
@@ -215,7 +217,7 @@ def run_dlc_gui():
     )
     ratio_right_label.grid(row=2, column=2, sticky="w")
     # to initialise the widget correctly, run this function once
-    gui_utils.change_ratio_entry_state(cfg, ratio_entry)
+    gui_utils.change_widget_state_based_on_checkbox(cfg, "convert_to_mm", ratio_entry)
 
     # subtract beam
     subtract_beam_checkbox = gaita_widgets.checkbox(

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/gui/group_gui.py

@@ -349,7 +349,7 @@ def build_mainwindow(root, group_number, root_dimensions):
         )
         ANOVA_checkbox.configure(
             command=lambda: change_ANOVA_buttons_state(ANOVA_buttons),
-        )
+        )  # dont use gui_utils here because its a bit special
         ANOVA_checkbox.grid(row=last_group_row + 7, column=0, columnspan=3, pady=10)
         # ANOVA design
         ANOVA_string_and_var_value = [
@@ -406,7 +406,8 @@ def build_mainwindow(root, group_number, root_dimensions):
                     group_names,
                     group_dirs,
                     results_dir,
-                    load_dir,
+                    load_dir,  # tk var
+                    cfg["which_leg"],  # tk var
                     root,
                 ),
             ),
@@ -595,7 +596,7 @@ def advanced_cfgwindow(mainwindow):
 
 
 def definefeatures_window(
-    mainwindow, group_names, group_dirs, results_dir, load_dir, root
+    mainwindow, group_names, group_dirs, results_dir, load_dir, which_leg, root
 ):
     """Build define features window"""
 
@@ -618,7 +619,7 @@ def definefeatures_window(
     #    averaging, or throw errors if we don't manage to do so
     #    -- (note we extract from average xls since that automatically informs about
     #        export_average_x/y vars!)
-    if load_dir:
+    if len(load_dir.get()) > 0:
         group_one_string = group_names[0].get()
         load_dir_string = load_dir.get()
         df = pd.read_excel(
@@ -659,7 +660,11 @@ def definefeatures_window(
             if av_sheet_path:  # won't be true if no AVXLS found
                 full_path = os.path.join(some_IDs_dir, av_sheet_path)
                 if av_sheet_path.endswith(".xlsx"):
-                    df = pd.read_excel(full_path)
+                    try:
+                        # universal 3D (that has which_leg sheets) always exports xlsx
+                        df = pd.read_excel(full_path, sheet_name=which_leg.get())
+                    except:
+                        df = pd.read_excel(full_path)
                     break
                 elif av_sheet_path.endswith(".csv"):
                     df = pd.read_csv(full_path)
@@ -912,7 +917,7 @@ def check_folderinfo_and_cfg(folderinfo, cfg):
         for key in inner_dict.keys():
             # check string vars: group dirs & names and results dir
             if key in STRING_VARS:
-                if key == "group_dirs" and not folderinfo["load_dir"]:
+                if key == "group_dirs" and len(folderinfo["load_dir"]) > 0:
                     for g_idx, group_dir in enumerate(inner_dict[key]):
                         if not os.path.exists(group_dir):
                             this_msg = (
@@ -967,8 +972,8 @@ def extract_this_runs_folderinfo_and_cfg(folderinfo, cfg):
     # using string concatenation). If not just add a forward slash. In the beginning
     # of autogaita.group, we will convert os.sep to forward slashes if they should be
     # backward slashes (windows works with both)
-    # => Note this was changed and works with os.path.join() now...
-    # => NU: have another look @ this matter in GUI functions
+    # => The part that does this in autogaita.group was updated and uses os.path.join
+    # => Thought about changing strings to Paths here but will leave it for now it works
     for key in folderinfo.keys():
         if key == "group_names":
             this_runs_folderinfo[key] = folderinfo[key]
@@ -981,8 +986,8 @@ def extract_this_runs_folderinfo_and_cfg(folderinfo, cfg):
                     else:
                         this_runs_folderinfo[key][i] = folderinfo[key][i]
             # results_dir and load_dir (check load_dir only if not empty)
-            elif key == "results_dir" or (key == "load_dir" and folderinfo[key]):
-                if not folderinfo[key].endswith(os.sep):
+            elif key in ["results_dir", "load_dir"]:
+                if len(folderinfo[key]) > 0 and not folderinfo[key].endswith(os.sep):
                     this_runs_folderinfo[key] = folderinfo[key] + "/"
                 else:
                     this_runs_folderinfo[key] = folderinfo[key]

autogaita-1.0.6/autogaita/gui/group_gui_config.json

@@ -0,0 +1,121 @@
+[
+    {
+        "group_names": [
+            "crawling",
+            "sideways",
+            "walking",
+            "jogging",
+            "jumping_jack",
+            "vertical_jumping"
+        ],
+        "group_dirs": [
+            "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/crawling/Results/",
+            "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/sideways/Results/",
+            "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/walking/Results/",
+            "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/jogging/Results/",
+            "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/jumping_jack/Results/",
+            "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/vertical_jumping/Results/"
+        ],
+        "results_dir": "/Users/mahan/sciebo/Research/AutoGaitA/Showcase 3/MOVI/First Analysis/gaita prepared/gaita_tests/",
+        "load_dir": ""
+    },
+    {
+        "do_permtest": true,
+        "do_anova": true,
+        "anova_design": "RM ANOVA",
+        "permutation_number": "10000",
+        "stats_threshold": "0.05",
+        "which_leg": "left",
+        "PCA_n_components": "10",
+        "PCA_custom_scatter_PCs": "",
+        "PCA_save_3D_video": true,
+        "PCA_bins": "",
+        "plot_SE": false,
+        "color_palette": "Set2",
+        "dont_show_plots": false,
+        "legend_outside": true,
+        "stats_variables": [],
+        "PCA_variables": [
+            "Head Y",
+            "Head Z",
+            "Hip Y",
+            "Hip Z",
+            "Pelvis Y",
+            "Pelvis Z",
+            "Thorax Y",
+            "Thorax Z",
+            "Ankle, left Y",
+            "Ankle, left Z",
+            "Elbow, left Y",
+            "Elbow, left Z",
+            "Hip, left Y",
+            "Hip, left Z",
+            "Hand, left Y",
+            "Hand, left Z",
+            "Knee, left Y",
+            "Knee, left Z",
+            "Shoulder, left Y",
+            "Shoulder, left Z",
+            "Wrist, left Y",
+            "Wrist, left Z",
+            "Foot, left Y",
+            "Foot, left Z",
+            "Ankle, right Y",
+            "Ankle, right Z",
+            "Elbow, right Y",
+            "Elbow, right Z",
+            "Hip, right Y",
+            "Hip, right Z",
+            "Hand, right Y",
+            "Hand, right Z",
+            "Knee, right Y",
+            "Knee, right Z",
+            "Shoulder, right Y",
+            "Shoulder, right Z",
+            "Wrist, right Y",
+            "Wrist, right Z",
+            "Foot, right Y",
+            "Foot, right Z",
+            "Ankle, left Angle",
+            "Knee, left Angle",
+            "Elbow, left Angle",
+            "Foot, left Velocity",
+            "Foot, left Acceleration",
+            "Ankle, left Velocity",
+            "Ankle, left Acceleration",
+            "Knee, left Velocity",
+            "Knee, left Acceleration",
+            "Hip Velocity",
+            "Hip Acceleration",
+            "Pelvis Velocity",
+            "Pelvis Acceleration",
+            "Shoulder, left Velocity",
+            "Shoulder, left Acceleration",
+            "Head Velocity",
+            "Head Acceleration",
+            "Ankle, left Angle Velocity",
+            "Ankle, left Angle Acceleration",
+            "Knee, left Angle Velocity",
+            "Knee, left Angle Acceleration",
+            "Elbow, left Angle Velocity",
+            "Elbow, left Angle Acceleration",
+            "Ankle, right Angle",
+            "Knee, right Angle",
+            "Elbow, right Angle",
+            "Foot, right Velocity",
+            "Foot, right Acceleration",
+            "Ankle, right Velocity",
+            "Ankle, right Acceleration",
+            "Knee, right Velocity",
+            "Knee, right Acceleration",
+            "Shoulder, right Velocity",
+            "Shoulder, right Acceleration",
+            "Ankle, right Angle Velocity",
+            "Ankle, right Angle Acceleration",
+            "Knee, right Angle Velocity",
+            "Knee, right Angle Acceleration",
+            "Elbow, right Angle Velocity",
+            "Elbow, right Angle Acceleration"
+        ]
+    }
+]

autogaita-1.0.6/autogaita/gui/gui_utils.py

@@ -0,0 +1,51 @@
+import platform
+from importlib import resources
+
+
+# ...............................  general gui stuff  ..................................
+def configure_the_icon(root):
+    """Configure the icon - in macos it changes the dock icon, in windows it changes
+    all windows titlebar icons (taskbar cannot be changed without converting to exe)
+    """
+    if platform.system().startswith("Darwin"):
+        try:
+            from Cocoa import NSApplication, NSImage
+        except ImportError:
+            print("Unable to import pyobjc modules")
+        else:
+            with resources.path("autogaita.resources", "icon.icns") as icon_path:
+                ns_application = NSApplication.sharedApplication()
+                logo_ns_image = NSImage.alloc().initWithContentsOfFile_(str(icon_path))
+                ns_application.setApplicationIconImage_(logo_ns_image)
+    elif platform.system().startswith("win"):
+        with resources.path("autogaita.resources", "icon.ico") as icon_path:
+            root.iconbitmap(str(icon_path))
+
+
+def fix_window_after_its_creation(window):
+    """Perform some quality of life things after creating a window (root or Toplevel)"""
+    window.attributes("-topmost", True)
+    window.focus_set()
+    window.after(100, lambda: window.attributes("-topmost", False))  # 100 ms
+
+
+def maximise_widgets(window):
+    """Maximises all widgets to look good in fullscreen"""
+    # fix the grid to fill the window
+    num_rows = window.grid_size()[1]  # maximise rows
+    for r in range(num_rows):
+        window.grid_rowconfigure(r, weight=1)
+    num_cols = window.grid_size()[0]  # maximise cols
+    for c in range(num_cols):
+        window.grid_columnconfigure(c, weight=1)
+
+
+# ..............................  change widget states  ................................
+
+
+def change_widget_state_based_on_checkbox(cfg, key_of_checkbox, entry_to_change):
+    """Change the state of an entry widget based on whether a checkbox is checked."""
+    if cfg[key_of_checkbox].get() is True:
+        entry_to_change.configure(state="normal")
+    elif cfg[key_of_checkbox].get() is False:
+        entry_to_change.configure(state="disabled")

{autogaita-1.0.5 → autogaita-1.0.6}/autogaita/gui/sleap_gui.py

@@ -192,7 +192,9 @@ def run_sleap_gui():
         WIDGET_CFG,
     )
     convert_checkbox.configure(
-        command=lambda: gui_utils.change_ratio_entry_state(cfg, ratio_entry),
+        command=lambda: gui_utils.change_widget_state_based_on_checkbox(
+            cfg, "convert_to_mm", ratio_entry
+        ),
     )
     convert_checkbox.grid(row=2, column=0, columnspan=2, sticky="w")
 
@@ -209,7 +211,7 @@ def run_sleap_gui():
     )
     ratio_right_label.grid(row=2, column=2, sticky="w")
     # to initialise the widget correctly, run this function once
-    gui_utils.change_ratio_entry_state(cfg, ratio_entry)
+    gui_utils.change_widget_state_based_on_checkbox(cfg, "convert_to_mm", ratio_entry)
 
     # NU - I'll implement beam subtraction and gait direction flipping after having
     #      data for testing