autogaita 0.2.2__tar.gz → 0.3.1__tar.gz

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Files changed (40) hide show
  1. {autogaita-0.2.2 → autogaita-0.3.1}/PKG-INFO +1 -1
  2. {autogaita-0.2.2 → autogaita-0.3.1}/README.md +8 -1
  3. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita.py +1 -1
  4. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_dlc.py +445 -77
  5. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_dlc_gui.py +54 -17
  6. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_group.py +483 -123
  7. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_group_gui.py +15 -1
  8. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_simi.py +476 -67
  9. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_simi_gui.py +7 -9
  10. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/autogaita_dlc_multirun.py +30 -7
  11. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/autogaita_dlc_singlerun.py +2 -2
  12. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/autogaita_group_dlcrun.py +12 -7
  13. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/autogaita_group_simirun.py +1 -0
  14. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/autogaita_simi_multirun.py +1 -1
  15. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/autogaita_simi_singlerun.py +1 -1
  16. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/dlc_gui_config.json +15 -15
  17. autogaita-0.3.1/autogaita/group_gui_config.json +40 -0
  18. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/simi_gui_config.json +8 -8
  19. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita.egg-info/PKG-INFO +1 -1
  20. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita.egg-info/SOURCES.txt +7 -1
  21. {autogaita-0.2.2 → autogaita-0.3.1}/setup.py +1 -1
  22. autogaita-0.3.1/tests/test_dlc_approval.py +139 -0
  23. autogaita-0.3.1/tests/test_dlc_unit1_preparation.py +234 -0
  24. autogaita-0.3.1/tests/test_dlc_unit2_sc_extraction.py +264 -0
  25. autogaita-0.3.1/tests/test_dlc_unit3_main_analysis.py +216 -0
  26. autogaita-0.3.1/tests/test_group_approval.py +125 -0
  27. autogaita-0.3.1/tests/test_simi_approval.py +101 -0
  28. autogaita-0.2.2/autogaita/group_gui_config.json +0 -36
  29. {autogaita-0.2.2 → autogaita-0.3.1}/LICENSE +0 -0
  30. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/__init__.py +0 -0
  31. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/__main__.py +0 -0
  32. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_icon.icns +0 -0
  33. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_icon.ico +0 -0
  34. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_logo.png +0 -0
  35. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita_utils.py +0 -0
  36. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita/batchrun_scripts/__init__.py +0 -0
  37. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita.egg-info/dependency_links.txt +0 -0
  38. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita.egg-info/requires.txt +0 -0
  39. {autogaita-0.2.2 → autogaita-0.3.1}/autogaita.egg-info/top_level.txt +0 -0
  40. {autogaita-0.2.2 → autogaita-0.3.1}/setup.cfg +0 -0
{autogaita-0.2.2 → autogaita-0.3.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: autogaita
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- Version: 0.2.2
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+ Version: 0.3.1
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  Summary: Automatic Gait Analysis in Python
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  Home-page: https://github.com/mahan-hosseini/AutoGaitA/
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  Author: Mahan Hosseini
{autogaita-0.2.2 → autogaita-0.3.1}/README.md RENAMED
@@ -31,7 +31,7 @@ It is strongly recommended that a separate virtual environment for AutoGaitA is
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  - Access the main user interface via `python -m autogaita`.
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- - To update to the latest release (see the *Releases* panel on the right for the current version) activate your virtual environment & enter `pip install autogaita -U`.
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+ - To update to the latest release (see the *Releases* panel on the right for the latest release) activate the virtual environment and: `pip install autogaita -U`.
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  ## Tutorials and Examples
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@@ -67,6 +67,13 @@ By default, *AutoGaitA DLC* and *AutoGaitA Simi* implement standard values for m
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  ## Analysing other behaviours - AutoCyclA 🚴
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  Even though AutoGaitA's main focus is to automate and standardise gait analyses, our toolbox can be used to automate the analyses of any rhythmic behaviour of interest. For a proof-of-principle demonstration and an introduction of the general workflow of such analyses, see **[AutoCyclA - Automated Cycling Analysis with AutoGaitA.](https://github.com/mahan-hosseini/AutoGaitA/tree/main/autocycla)**
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+ ## Updating AutoGaitA
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+ It is strongly recommended that AutoGaitA is kept up to date since new features and important bugfixes are provided regularly.
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+ AutoGaitA's cfg files and dictionaries sometimes change as a result, which means that previously generated first-level *Results* folders cannot always be analysed with AutoGaitA Group after an update. In such cases, it is recommended to re-run first-level analyses.
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+ We document each version's cfg-changes in [AutoGaitA Releases](https://github.com/mahan-hosseini/AutoGaitA/releases), which is particularly relevant for users wrapping custom scripts around AutoGaitA's functions.
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  ## Reference
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  If you use this code or data please [cite our preprint](https://www.biorxiv.org/content/10.1101/2024.04.14.589409v1).
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{autogaita-0.2.2 → autogaita-0.3.1}/autogaita/autogaita.py RENAMED
@@ -8,7 +8,7 @@ import platform
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  # %% global constants
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  TXT_COLOR = "#ffffff" # white
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- FONT_SIZE = 20
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+ FONT_SIZE = 35
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  DLC_FG_COLOR = "#789b73" # grey green
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  DLC_HOVER_COLOR = "#287c37" # darkish green
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  SIMI_FG_COLOR = "#c0737a" # dusty rose