autogaita 0.2.2__tar.gz → 0.3.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- autogaita-0.3.0/PKG-INFO +24 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/README.md +7 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita.py +1 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_dlc.py +434 -77
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_dlc_gui.py +54 -17
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_group.py +483 -122
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_group_gui.py +15 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_simi.py +460 -68
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_simi_gui.py +7 -9
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/autogaita_dlc_multirun.py +1 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/autogaita_dlc_singlerun.py +1 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/autogaita_group_dlcrun.py +12 -7
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/autogaita_group_simirun.py +1 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/autogaita_simi_multirun.py +1 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/autogaita_simi_singlerun.py +1 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/dlc_gui_config.json +15 -15
- autogaita-0.3.0/autogaita/group_gui_config.json +40 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/simi_gui_config.json +8 -8
- autogaita-0.3.0/autogaita.egg-info/PKG-INFO +24 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita.egg-info/SOURCES.txt +7 -1
- {autogaita-0.2.2 → autogaita-0.3.0}/setup.py +1 -1
- autogaita-0.3.0/tests/test_dlc_approval.py +139 -0
- autogaita-0.3.0/tests/test_dlc_unit1_preparation.py +234 -0
- autogaita-0.3.0/tests/test_dlc_unit2_sc_extraction.py +264 -0
- autogaita-0.3.0/tests/test_dlc_unit3_main_analysis.py +216 -0
- autogaita-0.3.0/tests/test_group_approval.py +125 -0
- autogaita-0.3.0/tests/test_simi_approval.py +101 -0
- autogaita-0.2.2/PKG-INFO +0 -10
- autogaita-0.2.2/autogaita/group_gui_config.json +0 -36
- autogaita-0.2.2/autogaita.egg-info/PKG-INFO +0 -10
- {autogaita-0.2.2 → autogaita-0.3.0}/LICENSE +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/__init__.py +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/__main__.py +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_icon.icns +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_icon.ico +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_logo.png +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/autogaita_utils.py +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita/batchrun_scripts/__init__.py +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita.egg-info/dependency_links.txt +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita.egg-info/requires.txt +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/autogaita.egg-info/top_level.txt +0 -0
- {autogaita-0.2.2 → autogaita-0.3.0}/setup.cfg +0 -0
autogaita-0.3.0/PKG-INFO
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Metadata-Version: 2.1
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Name: autogaita
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Version: 0.3.0
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Summary: Automatic Gait Analysis in Python
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Home-page: https://github.com/mahan-hosseini/AutoGaitA/
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Author: Mahan Hosseini
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License: GPLv3
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Requires-Python: >=3.10
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License-File: LICENSE
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Requires-Dist: customtkinter>=5.2
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Requires-Dist: pandas>=2.0
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Requires-Dist: numpy>=1.24
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Requires-Dist: seaborn>=0.13
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Requires-Dist: matplotlib>=3.7
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Requires-Dist: scikit-learn>=1.2
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Requires-Dist: pingouin>=0.5
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Requires-Dist: scipy>=1.11
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Requires-Dist: ffmpeg-python>=0.2
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Requires-Dist: openpyxl>=3.1
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Requires-Dist: pillow>=10.3
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Requires-Dist: pyobjc
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Provides-Extra: dev
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Requires-Dist: pytest; extra == "dev"
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Requires-Dist: hypothesis; extra == "dev"
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@@ -67,6 +67,13 @@ By default, *AutoGaitA DLC* and *AutoGaitA Simi* implement standard values for m
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## Analysing other behaviours - AutoCyclA 🚴
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Even though AutoGaitA's main focus is to automate and standardise gait analyses, our toolbox can be used to automate the analyses of any rhythmic behaviour of interest. For a proof-of-principle demonstration and an introduction of the general workflow of such analyses, see **[AutoCyclA - Automated Cycling Analysis with AutoGaitA.](https://github.com/mahan-hosseini/AutoGaitA/tree/main/autocycla)**
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## Updating AutoGaitA
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It is strongly recommended that AutoGaitA is kept up to date since new features and important bugfixes are provided regularly.
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AutoGaitA's cfg files and dictionaries sometimes change as a result, which means that previously generated first-level *Results* folders cannot always be analysed with AutoGaitA Group after an update. In such cases, it is recommended to re-run first-level analyses.
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We document each version's cfg-changes in [AutoGaitA Releases](https://github.com/mahan-hosseini/AutoGaitA/releases), which is particularly relevant for users wrapping custom scripts around AutoGaitA's functions.
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## Reference
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If you use this code or data please [cite our preprint](https://www.biorxiv.org/content/10.1101/2024.04.14.589409v1).
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