autoemulate 0.2.0__tar.gz → 0.2.1__tar.gz

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Files changed (48) hide show
  1. {autoemulate-0.2.0 → autoemulate-0.2.1}/PKG-INFO +10 -3
  2. {autoemulate-0.2.0 → autoemulate-0.2.1}/README.md +8 -1
  3. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/conditional_neural_process.py +3 -3
  4. {autoemulate-0.2.0 → autoemulate-0.2.1}/pyproject.toml +2 -2
  5. {autoemulate-0.2.0 → autoemulate-0.2.1}/LICENSE +0 -0
  6. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/__init__.py +0 -0
  7. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/compare.py +0 -0
  8. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/cross_validate.py +0 -0
  9. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/data_splitting.py +0 -0
  10. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/datasets.py +0 -0
  11. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/__init__.py +0 -0
  12. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/conditional_neural_process_attn.py +0 -0
  13. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process.py +0 -0
  14. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_mogp.py +0 -0
  15. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_mt.py +0 -0
  16. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_sklearn.py +0 -0
  17. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_utils/__init__.py +0 -0
  18. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_utils/early_stopping_criterion.py +0 -0
  19. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_utils/poly_mean.py +0 -0
  20. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gaussian_process_utils/polynomial_features.py +0 -0
  21. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/gradient_boosting.py +0 -0
  22. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/light_gbm.py +0 -0
  23. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_net_sk.py +0 -0
  24. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_networks/__init__.py +0 -0
  25. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_networks/cnp_module.py +0 -0
  26. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_networks/cnp_module_attn.py +0 -0
  27. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_networks/datasets.py +0 -0
  28. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_networks/gp_module.py +0 -0
  29. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/neural_networks/losses.py +0 -0
  30. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/polynomials.py +0 -0
  31. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/radial_basis_functions.py +0 -0
  32. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/random_forest.py +0 -0
  33. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/emulators/support_vector_machines.py +0 -0
  34. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/experimental_design.py +0 -0
  35. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/hyperparam_searching.py +0 -0
  36. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/logging_config.py +0 -0
  37. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/metrics.py +0 -0
  38. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/model_processing.py +0 -0
  39. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/model_registry.py +0 -0
  40. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/plotting.py +0 -0
  41. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/printing.py +0 -0
  42. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/save.py +0 -0
  43. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/sensitivity_analysis.py +0 -0
  44. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/simulations/__init__.py +0 -0
  45. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/simulations/epidemic.py +0 -0
  46. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/simulations/projectile.py +0 -0
  47. {autoemulate-0.2.0 → autoemulate-0.2.1}/autoemulate/utils.py +0 -0
  48. {autoemulate-0.2.0 → autoemulate-0.2.1}/misc/AE_logo_final.png +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: autoemulate
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- Version: 0.2.0
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+ Version: 0.2.1
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  Summary: A python package for semi-automated emulation
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  License: MIT
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  Author: Martin Stoffel
@@ -21,14 +21,14 @@ Requires-Dist: mogp-emulator (>=0.7.2,<0.8.0)
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  Requires-Dist: numpy (>=1.24,<2.0)
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  Requires-Dist: pandas (>=2.1,<3.0)
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  Requires-Dist: salib (>=1.5.1,<2.0.0)
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- Requires-Dist: scikit-learn (>=1.3.0,<2.0.0)
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+ Requires-Dist: scikit-learn (>=1.3.0,<1.6.0)
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  Requires-Dist: scipy (>=1.11.3,<2.0.0)
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  Requires-Dist: skorch (>=0.15.0,<0.16.0)
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  Requires-Dist: torch (>=2.1.0,<3.0.0)
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  Requires-Dist: tqdm (>=4.66.2,<5.0.0)
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  Description-Content-Type: text/markdown
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- # AutoEmulate <a href="https://alan-turing-institute.github.io/autoemulate/"><img src="https://raw.githubusercontent.com/alan-turing-institute/autoemulate/logo/misc/AE_logo_final.png" align="right" height="138" /></a>
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+ # AutoEmulate <a href="https://alan-turing-institute.github.io/autoemulate/"><img src="misc/AE_logo_final.png" align="right" height="138" /></a>
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  ![CI](https://github.com/alan-turing-institute/autoemulate/actions/workflows/ci.yaml/badge.svg)
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  [![codecov](https://codecov.io/gh/alan-turing-institute/autoemulate/graph/badge.svg?token=XD1HXQUIGK)](https://codecov.io/gh/alan-turing-institute/autoemulate)
@@ -43,6 +43,8 @@ The project is in early development.
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  ## Installation
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+ `AutoEmulate` requires Python `>=3.10` and `<3.13`.
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+
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  There's lots of development at the moment, so we recommend installing the most current version from GitHub:
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  ```bash
@@ -117,6 +119,11 @@ You can find tutorials, FAQs and the API reference [here](https://alan-turing-in
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  <td align="center" valign="top" width="14.28%"><a href="https://github.com/snie007"><img src="https://avatars.githubusercontent.com/u/20723650?v=4?s=100" width="100px;" alt="steven niederer"/><br /><sub><b>steven niederer</b></sub></a><br /><a href="#ideas-snie007" title="Ideas, Planning, & Feedback">🤔</a> <a href="#content-snie007" title="Content">🖋</a> <a href="#projectManagement-snie007" title="Project Management">📆</a></td>
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  <td align="center" valign="top" width="14.28%"><a href="https://github.com/MaxBalmus"><img src="https://avatars.githubusercontent.com/u/34339336?v=4?s=100" width="100px;" alt="Maximilian Balmus"/><br /><sub><b>Maximilian Balmus</b></sub></a><br /><a href="#code-MaxBalmus" title="Code">💻</a> <a href="#bug-MaxBalmus" title="Bug reports">🐛</a></td>
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  <td align="center" valign="top" width="14.28%"><a href="https://github.com/aranas"><img src="https://avatars.githubusercontent.com/u/6906140?v=4?s=100" width="100px;" alt="Sophie Arana"/><br /><sub><b>Sophie Arana</b></sub></a><br /><a href="#content-aranas" title="Content">🖋</a> <a href="#doc-aranas" title="Documentation">📖</a> <a href="#projectManagement-aranas" title="Project Management">📆</a></td>
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+ <td align="center" valign="top" width="14.28%"><a href="https://github.com/marjanfamili"><img src="https://avatars.githubusercontent.com/u/44607686?v=4?s=100" width="100px;" alt="Marjan Famili"/><br /><sub><b>Marjan Famili</b></sub></a><br /><a href="#code-marjanfamili" title="Code">💻</a> <a href="#ideas-marjanfamili" title="Ideas, Planning, & Feedback">🤔</a> <a href="#doc-marjanfamili" title="Documentation">📖</a></td>
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+ <td align="center" valign="top" width="14.28%"><a href="https://github.com/radka-j"><img src="https://avatars.githubusercontent.com/u/29207091?v=4?s=100" width="100px;" alt="Radka Jersakova"/><br /><sub><b>Radka Jersakova</b></sub></a><br /><a href="#code-radka-j" title="Code">💻</a> <a href="#projectManagement-radka-j" title="Project Management">📆</a> <a href="#maintenance-radka-j" title="Maintenance">🚧</a> <a href="#ideas-radka-j" title="Ideas, Planning, & Feedback">🤔</a></td>
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+ </tr>
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+ <tr>
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+ <td align="center" valign="top" width="14.28%"><a href="https://github.com/aduncan001"><img src="https://avatars.githubusercontent.com/u/2352812?v=4?s=100" width="100px;" alt="Andrew Duncan"/><br /><sub><b>Andrew Duncan</b></sub></a><br /><a href="#ideas-aduncan001" title="Ideas, Planning, & Feedback">🤔</a> <a href="#projectManagement-aduncan001" title="Project Management">📆</a></td>
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  </tr>
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  </tbody>
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  </table>
@@ -1,4 +1,4 @@
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- # AutoEmulate <a href="https://alan-turing-institute.github.io/autoemulate/"><img src="https://raw.githubusercontent.com/alan-turing-institute/autoemulate/logo/misc/AE_logo_final.png" align="right" height="138" /></a>
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+ # AutoEmulate <a href="https://alan-turing-institute.github.io/autoemulate/"><img src="misc/AE_logo_final.png" align="right" height="138" /></a>
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  ![CI](https://github.com/alan-turing-institute/autoemulate/actions/workflows/ci.yaml/badge.svg)
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  [![codecov](https://codecov.io/gh/alan-turing-institute/autoemulate/graph/badge.svg?token=XD1HXQUIGK)](https://codecov.io/gh/alan-turing-institute/autoemulate)
@@ -13,6 +13,8 @@ The project is in early development.
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  ## Installation
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+ `AutoEmulate` requires Python `>=3.10` and `<3.13`.
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+
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  There's lots of development at the moment, so we recommend installing the most current version from GitHub:
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  ```bash
@@ -87,6 +89,11 @@ You can find tutorials, FAQs and the API reference [here](https://alan-turing-in
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  <td align="center" valign="top" width="14.28%"><a href="https://github.com/snie007"><img src="https://avatars.githubusercontent.com/u/20723650?v=4?s=100" width="100px;" alt="steven niederer"/><br /><sub><b>steven niederer</b></sub></a><br /><a href="#ideas-snie007" title="Ideas, Planning, & Feedback">🤔</a> <a href="#content-snie007" title="Content">🖋</a> <a href="#projectManagement-snie007" title="Project Management">📆</a></td>
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  <td align="center" valign="top" width="14.28%"><a href="https://github.com/MaxBalmus"><img src="https://avatars.githubusercontent.com/u/34339336?v=4?s=100" width="100px;" alt="Maximilian Balmus"/><br /><sub><b>Maximilian Balmus</b></sub></a><br /><a href="#code-MaxBalmus" title="Code">💻</a> <a href="#bug-MaxBalmus" title="Bug reports">🐛</a></td>
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  <td align="center" valign="top" width="14.28%"><a href="https://github.com/aranas"><img src="https://avatars.githubusercontent.com/u/6906140?v=4?s=100" width="100px;" alt="Sophie Arana"/><br /><sub><b>Sophie Arana</b></sub></a><br /><a href="#content-aranas" title="Content">🖋</a> <a href="#doc-aranas" title="Documentation">📖</a> <a href="#projectManagement-aranas" title="Project Management">📆</a></td>
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+ <td align="center" valign="top" width="14.28%"><a href="https://github.com/marjanfamili"><img src="https://avatars.githubusercontent.com/u/44607686?v=4?s=100" width="100px;" alt="Marjan Famili"/><br /><sub><b>Marjan Famili</b></sub></a><br /><a href="#code-marjanfamili" title="Code">💻</a> <a href="#ideas-marjanfamili" title="Ideas, Planning, & Feedback">🤔</a> <a href="#doc-marjanfamili" title="Documentation">📖</a></td>
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+ <td align="center" valign="top" width="14.28%"><a href="https://github.com/radka-j"><img src="https://avatars.githubusercontent.com/u/29207091?v=4?s=100" width="100px;" alt="Radka Jersakova"/><br /><sub><b>Radka Jersakova</b></sub></a><br /><a href="#code-radka-j" title="Code">💻</a> <a href="#projectManagement-radka-j" title="Project Management">📆</a> <a href="#maintenance-radka-j" title="Maintenance">🚧</a> <a href="#ideas-radka-j" title="Ideas, Planning, & Feedback">🤔</a></td>
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+ </tr>
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+ <tr>
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+ <td align="center" valign="top" width="14.28%"><a href="https://github.com/aduncan001"><img src="https://avatars.githubusercontent.com/u/2352812?v=4?s=100" width="100px;" alt="Andrew Duncan"/><br /><sub><b>Andrew Duncan</b></sub></a><br /><a href="#ideas-aduncan001" title="Ideas, Planning, & Feedback">🤔</a> <a href="#projectManagement-aduncan001" title="Project Management">📆</a></td>
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  </tr>
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  </tbody>
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  </table>
@@ -221,9 +221,9 @@ class ConditionalNeuralProcess(RegressorMixin, BaseEstimator):
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  def predict(self, X, return_std=False):
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  check_is_fitted(self)
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  X = check_array(X, dtype=np.float32)
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- X_context = torch.from_numpy(self.X_train_).float().unsqueeze(0)
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- y_context = torch.from_numpy(self.y_train_).float().unsqueeze(0)
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- X_target = torch.from_numpy(X).float().unsqueeze(0)
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+ X_context = torch.tensor(self.X_train_, dtype=torch.float32).unsqueeze(0)
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+ y_context = torch.tensor(self.y_train_, dtype=torch.float32).unsqueeze(0)
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+ X_target = torch.tensor(X, dtype=torch.float32).unsqueeze(0)
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  with torch.no_grad():
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  predictions = self.model_.module_.forward(X_context, y_context, X_target)
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "autoemulate"
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- version = "0.2.0"
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+ version = "0.2.1"
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  description = "A python package for semi-automated emulation"
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  license = "MIT"
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  authors = ["Martin Stoffel <mstoffel@turing.ac.uk>",
@@ -17,7 +17,7 @@ include = ["misc/AE_logo_final.png"]
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  python = ">=3.10,<3.13"
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  mogp-emulator = "^0.7.2"
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  matplotlib = "^3.7.2"
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- scikit-learn = "^1.3.0"
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+ scikit-learn = ">=1.3.0,<1.6.0"
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  pandas = "^2.1"
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  torch = "^2.1.0"
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  skorch = "^0.15.0"
File without changes