augmentrum 0.0.1__tar.gz → 0.0.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (51) hide show
  1. {augmentrum-0.0.1/augmentrum.egg-info → augmentrum-0.0.2}/PKG-INFO +3 -3
  2. {augmentrum-0.0.1 → augmentrum-0.0.2}/README.md +2 -2
  3. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/__init__.py +1 -1
  4. {augmentrum-0.0.1 → augmentrum-0.0.2/augmentrum.egg-info}/PKG-INFO +3 -3
  5. {augmentrum-0.0.1 → augmentrum-0.0.2}/pyproject.toml +1 -1
  6. {augmentrum-0.0.1 → augmentrum-0.0.2}/LICENSE +0 -0
  7. {augmentrum-0.0.1 → augmentrum-0.0.2}/MANIFEST.in +0 -0
  8. {augmentrum-0.0.1 → augmentrum-0.0.2}/assets/figures/logo.png +0 -0
  9. {augmentrum-0.0.1 → augmentrum-0.0.2}/assets/figures/overview.png +0 -0
  10. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/__init__.py +0 -0
  11. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/amplitude_scaling.py +0 -0
  12. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/apodization.py +0 -0
  13. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/artificial_peaks.py +0 -0
  14. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/baseline_augmentation.py +0 -0
  15. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/eddy_current.py +0 -0
  16. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/gaussian_noise.py +0 -0
  17. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/line_broadening.py +0 -0
  18. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/phase_frequency.py +0 -0
  19. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/residual_water.py +0 -0
  20. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/spatial_augmentations.py +0 -0
  21. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/spurious_echoes.py +0 -0
  22. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/augmentation/zero_fill.py +0 -0
  23. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/core/__init__.py +0 -0
  24. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/core/augmentrum.py +0 -0
  25. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/core/base_module.py +0 -0
  26. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/core/dataset_utils.py +0 -0
  27. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/core/nifti_mrs_plus.py +0 -0
  28. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/core/pipeline.py +0 -0
  29. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/dataset/brainbeats.py +0 -0
  30. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/dataset/cows.py +0 -0
  31. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/dataset/fmrsinpain.py +0 -0
  32. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/processing/bicubic_interpolator.py +0 -0
  33. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/processing/nifti_raw_processor.py +0 -0
  34. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/processing/tricubic_interpolator.py +0 -0
  35. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/processing/utils.py +0 -0
  36. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/resources/__init__.py +0 -0
  37. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/resources/scans/__init__.py +0 -0
  38. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/sampling/coil_average_sampler.py +0 -0
  39. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/sampling/kspace_reconstructor.py +0 -0
  40. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/sampling/kspace_sampling.py +0 -0
  41. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/sampling/subject_splitter.py +0 -0
  42. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/utils/__init__.py +0 -0
  43. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/utils/philips.py +0 -0
  44. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/utils/plotting.py +0 -0
  45. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/utils/tensor_ops.py +0 -0
  46. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum.egg-info/SOURCES.txt +0 -0
  47. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum.egg-info/dependency_links.txt +0 -0
  48. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum.egg-info/requires.txt +0 -0
  49. {augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum.egg-info/top_level.txt +0 -0
  50. {augmentrum-0.0.1 → augmentrum-0.0.2}/setup.cfg +0 -0
  51. {augmentrum-0.0.1 → augmentrum-0.0.2}/tests/test_readme_table.py +0 -0
{augmentrum-0.0.1/augmentrum.egg-info → augmentrum-0.0.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: augmentrum
3
- Version: 0.0.1
3
+ Version: 0.0.2
4
4
  Summary: A Data Augmentation Package for MR Spectroscopy
5
5
  Author-email: "John T. LaMaster" <jlamaste@gmail.com>, "Julian P. Merkofer" <j.p.merkofer@tue.nl>, "Kay C. Igwe" <kci2104@columbia.edu>
6
6
  License: Apache-2.0
@@ -51,7 +51,7 @@ Requires-Dist: jaxlib>=0.4.0; extra == "all"
51
51
  Dynamic: license-file
52
52
 
53
53
  <div align="center">
54
- <img src="assets/figures/logo.png" alt="Augmentrum Logo" width="100" style="margin-bottom: -10px;"/>
54
+ <img src="https://raw.githubusercontent.com/julianmer/Augmentrum/main/assets/figures/logo.png" alt="Augmentrum Logo" width="100" style="margin-bottom: -10px;"/>
55
55
  <h1 style="margin-top: 5px; margin-bottom: 5px;">Augmentrum</h1>
56
56
  <p style="margin-top: 0px;"><em>A Data Augmentation Package for MR Spectroscopy</em></p>
57
57
 
@@ -67,7 +67,7 @@ Dynamic: license-file
67
67
  **Augmentrum** is a modular Python framework designed to help researchers with limited *in-vivo* MRS data create diverse, physically consistent datasets through flexible augmentation. It supports **k-space resampling**, **coil and average sampling**, **signal-level perturbations**, and **synthetic artifact generation**, expanding both synthetic and *in-vivo* data in a realistic and controlled manner.
68
68
 
69
69
  <div align="center">
70
- <img src="assets/figures/overview.png" alt="Augmentrum Pipeline Overview" width="800"/>
70
+ <img src="https://raw.githubusercontent.com/julianmer/Augmentrum/main/assets/figures/overview.png" alt="Augmentrum Pipeline Overview" width="800"/>
71
71
  </div>
72
72
 
73
73
  Built for data-driven MRS applications, Augmentrum streamlines the integration of data augmentation into existing workflows. It operates on the **NIfTI-MRS** standard, making it compatible with any acquisition format. Simply load your data as NIfTI (using `spec2nii` if needed) and apply either predefined augmentation settings or build a custom pipeline by combining modules. Each augmentation can be parameterized or used with default ranges to populate a dense and diverse dataset environment.
{augmentrum-0.0.1 → augmentrum-0.0.2}/README.md RENAMED
@@ -1,5 +1,5 @@
1
1
  <div align="center">
2
- <img src="assets/figures/logo.png" alt="Augmentrum Logo" width="100" style="margin-bottom: -10px;"/>
2
+ <img src="https://raw.githubusercontent.com/julianmer/Augmentrum/main/assets/figures/logo.png" alt="Augmentrum Logo" width="100" style="margin-bottom: -10px;"/>
3
3
  <h1 style="margin-top: 5px; margin-bottom: 5px;">Augmentrum</h1>
4
4
  <p style="margin-top: 0px;"><em>A Data Augmentation Package for MR Spectroscopy</em></p>
5
5
 
@@ -15,7 +15,7 @@
15
15
  **Augmentrum** is a modular Python framework designed to help researchers with limited *in-vivo* MRS data create diverse, physically consistent datasets through flexible augmentation. It supports **k-space resampling**, **coil and average sampling**, **signal-level perturbations**, and **synthetic artifact generation**, expanding both synthetic and *in-vivo* data in a realistic and controlled manner.
16
16
 
17
17
  <div align="center">
18
- <img src="assets/figures/overview.png" alt="Augmentrum Pipeline Overview" width="800"/>
18
+ <img src="https://raw.githubusercontent.com/julianmer/Augmentrum/main/assets/figures/overview.png" alt="Augmentrum Pipeline Overview" width="800"/>
19
19
  </div>
20
20
 
21
21
  Built for data-driven MRS applications, Augmentrum streamlines the integration of data augmentation into existing workflows. It operates on the **NIfTI-MRS** standard, making it compatible with any acquisition format. Simply load your data as NIfTI (using `spec2nii` if needed) and apply either predefined augmentation settings or build a custom pipeline by combining modules. Each augmentation can be parameterized or used with default ranges to populate a dense and diverse dataset environment.
{augmentrum-0.0.1 → augmentrum-0.0.2}/augmentrum/__init__.py RENAMED
@@ -5,7 +5,7 @@ A modular Python framework designed to help researchers with limited in-vivo MRS
5
5
  create diverse, physically consistent datasets through flexible augmentation.
6
6
  """
7
7
 
8
- __version__ = "0.0.1"
8
+ __version__ = "0.0.2"
9
9
  __author__ = "John T. LaMaster, Julian P. Merkofer, Kay C. Igwe"
10
10
  __email__ = "j.p.merkofer@tue.nl"
11
11
 
{augmentrum-0.0.1 → augmentrum-0.0.2/augmentrum.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: augmentrum
3
- Version: 0.0.1
3
+ Version: 0.0.2
4
4
  Summary: A Data Augmentation Package for MR Spectroscopy
5
5
  Author-email: "John T. LaMaster" <jlamaste@gmail.com>, "Julian P. Merkofer" <j.p.merkofer@tue.nl>, "Kay C. Igwe" <kci2104@columbia.edu>
6
6
  License: Apache-2.0
@@ -51,7 +51,7 @@ Requires-Dist: jaxlib>=0.4.0; extra == "all"
51
51
  Dynamic: license-file
52
52
 
53
53
  <div align="center">
54
- <img src="assets/figures/logo.png" alt="Augmentrum Logo" width="100" style="margin-bottom: -10px;"/>
54
+ <img src="https://raw.githubusercontent.com/julianmer/Augmentrum/main/assets/figures/logo.png" alt="Augmentrum Logo" width="100" style="margin-bottom: -10px;"/>
55
55
  <h1 style="margin-top: 5px; margin-bottom: 5px;">Augmentrum</h1>
56
56
  <p style="margin-top: 0px;"><em>A Data Augmentation Package for MR Spectroscopy</em></p>
57
57
 
@@ -67,7 +67,7 @@ Dynamic: license-file
67
67
  **Augmentrum** is a modular Python framework designed to help researchers with limited *in-vivo* MRS data create diverse, physically consistent datasets through flexible augmentation. It supports **k-space resampling**, **coil and average sampling**, **signal-level perturbations**, and **synthetic artifact generation**, expanding both synthetic and *in-vivo* data in a realistic and controlled manner.
68
68
 
69
69
  <div align="center">
70
- <img src="assets/figures/overview.png" alt="Augmentrum Pipeline Overview" width="800"/>
70
+ <img src="https://raw.githubusercontent.com/julianmer/Augmentrum/main/assets/figures/overview.png" alt="Augmentrum Pipeline Overview" width="800"/>
71
71
  </div>
72
72
 
73
73
  Built for data-driven MRS applications, Augmentrum streamlines the integration of data augmentation into existing workflows. It operates on the **NIfTI-MRS** standard, making it compatible with any acquisition format. Simply load your data as NIfTI (using `spec2nii` if needed) and apply either predefined augmentation settings or build a custom pipeline by combining modules. Each augmentation can be parameterized or used with default ranges to populate a dense and diverse dataset environment.
{augmentrum-0.0.1 → augmentrum-0.0.2}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "augmentrum"
7
- version = "0.0.1"
7
+ version = "0.0.2"
8
8
  description = "A Data Augmentation Package for MR Spectroscopy"
9
9
  readme = "README.md"
10
10
  authors = [
{augmentrum-0.0.1 → augmentrum-0.0.2}/LICENSE RENAMED
File without changes
{augmentrum-0.0.1 → augmentrum-0.0.2}/MANIFEST.in RENAMED
File without changes
{augmentrum-0.0.1 → augmentrum-0.0.2}/setup.cfg RENAMED
File without changes