atomistics 0.3.3__tar.gz → 0.3.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. {atomistics-0.3.3 → atomistics-0.3.4}/PKG-INFO +10 -10
  2. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/_version.py +2 -2
  3. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/phonons/helper.py +2 -2
  4. {atomistics-0.3.3 → atomistics-0.3.4}/pyproject.toml +9 -9
  5. {atomistics-0.3.3 → atomistics-0.3.4}/.gitignore +0 -0
  6. {atomistics-0.3.3 → atomistics-0.3.4}/LICENSE +0 -0
  7. {atomistics-0.3.3 → atomistics-0.3.4}/README.md +0 -0
  8. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/__init__.py +0 -0
  9. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/__init__.py +0 -0
  10. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/ase.py +0 -0
  11. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/hessian.py +0 -0
  12. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/interface.py +0 -0
  13. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/__init__.py +0 -0
  14. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/commands.py +0 -0
  15. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/filecalculator.py +0 -0
  16. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/helpers.py +0 -0
  17. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/libcalculator.py +0 -0
  18. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/phonon.py +0 -0
  19. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/lammps/potential.py +0 -0
  20. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/qe.py +0 -0
  21. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/sphinxdft.py +0 -0
  22. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/vasp.py +0 -0
  23. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/calculators/wrapper.py +0 -0
  24. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/referencedata/__init__.py +0 -0
  25. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/referencedata/mendeleev.py +0 -0
  26. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/referencedata/wikipedia.py +0 -0
  27. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/referencedata/wolframalpha.py +0 -0
  28. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/shared/__init__.py +0 -0
  29. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/shared/import_warning.py +0 -0
  30. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/shared/output.py +0 -0
  31. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/shared/parallel.py +0 -0
  32. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/shared/thermal_expansion.py +0 -0
  33. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/shared/tqdm_iterator.py +0 -0
  34. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/__init__.py +0 -0
  35. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/elastic/__init__.py +0 -0
  36. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/elastic/elastic_moduli.py +0 -0
  37. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/elastic/helper.py +0 -0
  38. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/elastic/symmetry.py +0 -0
  39. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/elastic/workflow.py +0 -0
  40. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/evcurve/__init__.py +0 -0
  41. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/evcurve/debye.py +0 -0
  42. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/evcurve/fit.py +0 -0
  43. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/evcurve/helper.py +0 -0
  44. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/evcurve/thermo.py +0 -0
  45. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/evcurve/workflow.py +0 -0
  46. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/interface.py +0 -0
  47. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/langevin.py +0 -0
  48. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/molecular_dynamics.py +0 -0
  49. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/phonons/__init__.py +0 -0
  50. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/phonons/units.py +0 -0
  51. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/phonons/workflow.py +0 -0
  52. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/quasiharmonic.py +0 -0
  53. {atomistics-0.3.3 → atomistics-0.3.4}/atomistics/workflows/structure_optimization.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: atomistics
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- Version: 0.3.3
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+ Version: 0.3.4
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  Summary: Interfaces for atomistic simulation codes and workflows
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  Project-URL: Homepage, https://github.com/pyiron/atomistics
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  Project-URL: Documentation, https://atomistics.readthedocs.io
@@ -49,7 +49,7 @@ Classifier: Programming Language :: Python :: 3.13
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  Classifier: Topic :: Scientific/Engineering :: Physics
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  Requires-Python: <3.15,>=3.9
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  Requires-Dist: ase<=3.26.0,>=3.23.0
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- Requires-Dist: numpy<=2.3.4,>=1.26.4
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+ Requires-Dist: numpy<=2.3.5,>=1.26.4
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  Requires-Dist: scipy<=1.16.3,>=1.11.2
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  Requires-Dist: spglib<=2.6.0,>=2.0.2
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  Provides-Extra: experimental
@@ -62,26 +62,26 @@ Requires-Dist: gpaw<=25.7.0,>=21.6.0; extra == 'gpaw'
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  Provides-Extra: lammps
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  Requires-Dist: jinja2<=3.1.6,>=2.11.3; extra == 'lammps'
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  Requires-Dist: pandas<=2.3.3,>=2.0.3; extra == 'lammps'
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- Requires-Dist: pyiron-lammps<=0.4.9,>=0.3.2; extra == 'lammps'
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- Requires-Dist: pylammpsmpi<=0.3.6,>=0.2.1; extra == 'lammps'
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+ Requires-Dist: pyiron-lammps<=0.4.10,>=0.3.2; extra == 'lammps'
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+ Requires-Dist: pylammpsmpi<=0.3.7,>=0.2.1; extra == 'lammps'
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  Provides-Extra: lammps-phonons
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  Requires-Dist: dynaphopy<=1.18.0,>=1.17.11; extra == 'lammps-phonons'
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  Requires-Dist: jinja2<=3.1.6,>=2.11.3; extra == 'lammps-phonons'
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  Requires-Dist: pandas<=2.3.3,>=2.0.3; extra == 'lammps-phonons'
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- Requires-Dist: pyiron-lammps<=0.4.9,>=0.3.2; extra == 'lammps-phonons'
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- Requires-Dist: pylammpsmpi<=0.3.6,>=0.2.1; extra == 'lammps-phonons'
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+ Requires-Dist: pyiron-lammps<=0.4.10,>=0.3.2; extra == 'lammps-phonons'
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+ Requires-Dist: pylammpsmpi<=0.3.7,>=0.2.1; extra == 'lammps-phonons'
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  Provides-Extra: phonopy
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- Requires-Dist: phonopy<=2.43.6,>=2.20.0; extra == 'phonopy'
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+ Requires-Dist: phonopy<=2.44.0,>=2.20.0; extra == 'phonopy'
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  Requires-Dist: seekpath<=2.1.0,>=1.9.0; extra == 'phonopy'
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- Requires-Dist: structuretoolkit<=0.0.37,>=0.0.10; extra == 'phonopy'
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+ Requires-Dist: structuretoolkit<=0.0.38,>=0.0.10; extra == 'phonopy'
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  Provides-Extra: qe
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  Requires-Dist: pwtools==1.3.0; extra == 'qe'
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  Provides-Extra: sphinxdft
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- Requires-Dist: sphinx-parser==0.1.3; extra == 'sphinxdft'
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+ Requires-Dist: sphinx-parser==0.1.5; extra == 'sphinxdft'
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  Provides-Extra: tqdm
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  Requires-Dist: tqdm==4.67.1; extra == 'tqdm'
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  Provides-Extra: vasp
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- Requires-Dist: pyiron-vasp==0.2.15; extra == 'vasp'
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+ Requires-Dist: pyiron-vasp==0.2.16; extra == 'vasp'
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  Description-Content-Type: text/markdown
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  # atomistics
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
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  commit_id: COMMIT_ID
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  __commit_id__: COMMIT_ID
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- __version__ = version = '0.3.3'
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- __version_tuple__ = version_tuple = (0, 3, 3)
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+ __version__ = version = '0.3.4'
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+ __version_tuple__ = version_tuple = (0, 3, 4)
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  __commit_id__ = commit_id = None
@@ -465,8 +465,8 @@ def plot_dos(
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  """
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  import matplotlib.pyplot as plt
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468
- dos_energies = (phonopy_dict["total_dos_dict"]["frequency_points"],)
469
- dos_total = (phonopy_dict["total_dos_dict"]["total_dos"],)
468
+ dos_energies = phonopy_dict["total_dos_dict"]["frequency_points"]
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+ dos_total = phonopy_dict["total_dos_dict"]["total_dos"]
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  if axis is None:
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  _, axis = plt.subplots(1, 1)
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  axis.plot(dos_energies, dos_total, *args, **kwargs)
@@ -26,7 +26,7 @@ classifiers = [
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  ]
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  dependencies = [
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  "ase>=3.23.0,<=3.26.0",
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- "numpy>=1.26.4,<=2.3.4",
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+ "numpy>=1.26.4,<=2.3.5",
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  "scipy>=1.11.2,<=1.16.3",
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  "spglib>=2.0.2,<=2.6.0",
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  ]
@@ -39,25 +39,25 @@ Repository = "https://github.com/pyiron/atomistics"
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40
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  [project.optional-dependencies]
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  phonopy = [
42
- "phonopy>=2.20.0,<=2.43.6",
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+ "phonopy>=2.20.0,<=2.44.0",
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  "seekpath>=1.9.0,<=2.1.0",
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- "structuretoolkit>=0.0.10,<=0.0.37",
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+ "structuretoolkit>=0.0.10,<=0.0.38",
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  ]
46
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  gpaw = [
47
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  "gpaw>=21.6.0,<=25.7.0",
48
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  ]
49
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  lammps = [
50
- "pylammpsmpi>=0.2.1,<=0.3.6",
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+ "pylammpsmpi>=0.2.1,<=0.3.7",
51
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  "jinja2>=2.11.3,<=3.1.6",
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  "pandas>=2.0.3,<=2.3.3",
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- "pyiron_lammps>=0.3.2,<=0.4.9",
53
+ "pyiron_lammps>=0.3.2,<=0.4.10",
54
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  ]
55
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  lammps_phonons = [
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- "pylammpsmpi>=0.2.1,<=0.3.6",
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+ "pylammpsmpi>=0.2.1,<=0.3.7",
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  "jinja2>=2.11.3,<=3.1.6",
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  "pandas>=2.0.3,<=2.3.3",
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  "dynaphopy>=1.17.11,<=1.18.0",
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- "pyiron_lammps>=0.3.2,<=0.4.9",
60
+ "pyiron_lammps>=0.3.2,<=0.4.10",
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  ]
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  experimental = [
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  "lxml>=4.9.1,<=6.0.2",
@@ -66,7 +66,7 @@ experimental = [
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  "requests>=2.24.0,<=2.32.5",
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  ]
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  sphinxdft = [
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- "sphinx-parser==0.1.3"
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+ "sphinx-parser==0.1.5"
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  ]
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  qe = [
72
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  "pwtools==1.3.0"
@@ -75,7 +75,7 @@ tqdm = [
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  "tqdm==4.67.1"
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  ]
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  vasp = [
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- "pyiron_vasp==0.2.15"
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+ "pyiron_vasp==0.2.16"
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  ]
80
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81
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  [tool.hatch.build]
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