atlastrack 0.7.1__tar.gz

atlastrack-0.7.1/.gitignore

@@ -0,0 +1,49 @@
+# --- Python ---
+__pycache__/
+*.py[cod]
+*$py.class
+*.egg-info/
+*.egg
+build/
+dist/
+.eggs/
+pip-wheel-metadata/
+
+# --- Virtual envs / lockfiles / local files ---
+.venv/
+venv/
+env/
+.python-version
+uv.lock
+.claude
+
+# --- Tooling caches ---
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+.tox/
+htmlcov/
+.coverage
+.coverage.*
+coverage.xml
+
+# --- IDE ---
+.idea/
+.vscode/
+*.swp
+.DS_Store
+Thumbs.db
+
+# --- Project ---
+# BrainGlobe atlas downloads
+.brainglobe/
+
+# Local-only test fixtures (downloaded via pooch)
+tests/fixtures/_downloaded/
+
+# Project files / scratch
+*.histo2ccf.json
+scratch/
+
+# Example data
+example data/

atlastrack-0.7.1/.import_linter_cache/.gitignore

@@ -0,0 +1,2 @@
+# Automatically created by Grimp.
+*

atlastrack-0.7.1/.import_linter_cache/1f2c73f17c73c621955c943ccf7fb4cf63c39ecf.data.json

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atlastrack-0.7.1/.import_linter_cache/CACHEDIR.TAG

@@ -0,0 +1,3 @@
+Signature: 8a477f597d28d172789f06886806bc55
+# This file is a cache directory tag automatically created by Grimp.
+# For information about cache directory tags see https://bford.info/cachedir/

atlastrack-0.7.1/.import_linter_cache/atlastrack.meta.json

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atlastrack-0.7.1/.import_linter_cache/histo_to_ccf.meta.json

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atlastrack-0.7.1/.importlinter

@@ -0,0 +1,33 @@
+[importlinter]
+root_package = atlastrack
+# Required whenever the forbidden modules are third-party (napari, qtpy, ...):
+# without it import-linter 2.x refuses to build the graph and exits with a config
+# error, which looks enough like a failed contract to be mistaken for one. The
+# contract below was silently not being checked until this was added.
+include_external_packages = True
+
+# The single most important architectural rule: the core (registration, atlas,
+# probes, landmarks, sectioning, io, viz.plotly3d) must NOT depend on Qt/napari.
+# Only atlastrack.gui (and viz.napari3d) may import them.
+
+[importlinter:contract:core-stays-headless]
+name = Core modules must not import Qt/napari/magicgui
+type = forbidden
+source_modules =
+    atlastrack.project
+    atlastrack.io
+    atlastrack.atlas
+    atlastrack.sectioning
+    atlastrack.landmarks
+    atlastrack.registration
+    atlastrack.probes
+    atlastrack.ephys
+    atlastrack.viz.plotly3d
+forbidden_modules =
+    napari
+    qtpy
+    magicgui
+    PyQt5
+    PyQt6
+    PySide2
+    PySide6

atlastrack-0.7.1/.pre-commit-config.yaml

@@ -0,0 +1,17 @@
+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.5.7
+    hooks:
+      - id: ruff
+        args: [--fix]
+      - id: ruff-format
+
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-toml
+      - id: check-added-large-files
+        args: [--maxkb=2000]