astro-notebooks 0.1.0__tar.gz

astro_notebooks-0.1.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/

astro_notebooks-0.1.0/.jp_app_launcher_astro-notebooks.yaml

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+# Notebook in the "Stellarphot setup" section of the launcher
+
+- title: Image viewers
+  description: Widgets for viewing a folder of images or a single image
+  source: ../astro_notebooks/image-viewers.ipynb
+  icon: ../astro-notebooks/stellarphot-logo.svg
+  cwd: not_used
+  type: notebook
+  catalog: Astro tools
+
+- title: Reproject images
+  description: Widgets for viewing a folder of images or a single image
+  source: ../astro_notebooks/reproject-images.ipynb
+  icon: ../astro-notebooks/stellarphot-logo.svg
+  cwd: not_used
+  type: notebook
+  catalog: Astro tools

astro_notebooks-0.1.0/LICENSE

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+BSD 3-Clause License
+
+Copyright (c) 2024, Paul P. Feder Observatory at Minnesota State University Moorhead  
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

astro_notebooks-0.1.0/PKG-INFO

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+Metadata-Version: 2.3
+Name: astro-notebooks
+Version: 0.1.0
+Project-URL: Documentation, https://github.com/feder-observatory/astro-notebooks#readme
+Project-URL: Issues, https://github.com/feder-observatory/astro-notebooks/issues
+Project-URL: Source, https://github.com/feder-observatory/astro-notebooks
+Author-email: Matt Craig <mattwcraig@gmail.com>
+License-Expression: BSD-3-Clause
+License-File: LICENSE
+Classifier: Development Status :: 4 - Beta
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Programming Language :: Python :: Implementation :: PyPy
+Requires-Python: >=3.11
+Requires-Dist: jupyter-app-launcher
+Requires-Dist: stellarphot
+Description-Content-Type: text/markdown
+
+# astro-notebooks
+
+[![PyPI - Version](https://img.shields.io/pypi/v/astro-notebooks.svg)](https://pypi.org/project/astro-notebooks)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/astro-notebooks.svg)](https://pypi.org/project/astro-notebooks)
+
+-----
+
+## Table of Contents
+
+- [Installation](#installation)
+- [License](#license)
+
+## Installation
+
+```console
+pip install astro-notebooks
+```
+
+## License
+
+`astro-notebooks` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.

astro_notebooks-0.1.0/README.md

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+# astro-notebooks
+
+[![PyPI - Version](https://img.shields.io/pypi/v/astro-notebooks.svg)](https://pypi.org/project/astro-notebooks)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/astro-notebooks.svg)](https://pypi.org/project/astro-notebooks)
+
+-----
+
+## Table of Contents
+
+- [Installation](#installation)
+- [License](#license)
+
+## Installation
+
+```console
+pip install astro-notebooks
+```
+
+## License
+
+`astro-notebooks` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.

astro_notebooks-0.1.0/pyproject.toml

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+[build-system]
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
+
+[project]
+name = "astro-notebooks"
+dynamic = ["version"]
+description = ''
+readme = "README.md"
+requires-python = ">=3.11"
+license = "BSD-3-Clause"
+keywords = []
+authors = [
+  { name = "Matt Craig", email = "mattwcraig@gmail.com" },
+]
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Programming Language :: Python",
+  "Programming Language :: Python :: 3.8",
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: Implementation :: CPython",
+  "Programming Language :: Python :: Implementation :: PyPy",
+]
+dependencies = [
+  "jupyter-app-launcher",
+  "stellarphot",
+]
+
+[project.urls]
+Documentation = "https://github.com/feder-observatory/astro-notebooks#readme"
+Issues = "https://github.com/feder-observatory/astro-notebooks/issues"
+Source = "https://github.com/feder-observatory/astro-notebooks"
+
+[tool.hatch.version]
+source = "vcs"
+
+[tool.hatch.build.hooks.vcs]
+version-file = "src/astro_notebooks/_version.py"
+
+[tool.hatch.build.targets.sdist]
+include = [
+    ".jp_app_launcher_astro-notebooks.yaml",
+    "src/astro_notebooks/",
+]
+
+[tool.hatch.build.targets.wheel.shared-data]
+# This section determines what data files are included in the wheel
+# and where they should eventually be installed in the user's environment.
+# This includes the notebooks used in the launcher
+"src/astro_notebooks" = "share/jupyter/astro_notebooks"
+".jp_app_launcher_astro-notebooks.yaml" = "share/jupyter/jupyter_app_launcher/jp_app_launcher_astro-notebooks.yaml"
+
+[tool.hatch.envs.types]
+extra-dependencies = [
+  "mypy>=1.0.0",
+]
+[tool.hatch.envs.types.scripts]
+check = "mypy --install-types --non-interactive {args:src/astro_notebooks tests}"
+
+[tool.coverage.run]
+source_pkgs = ["astro_notebooks", "tests"]
+branch = true
+parallel = true
+omit = [
+  "src/astro_notebooks/__about__.py",
+]
+
+[tool.coverage.paths]
+astro_notebooks = ["src/astro_notebooks", "*/astro-notebooks/src/astro_notebooks"]
+tests = ["tests", "*/astro-notebooks/tests"]
+
+[tool.coverage.report]
+exclude_lines = [
+  "no cov",
+  "if __name__ == .__main__.:",
+  "if TYPE_CHECKING:",
+]

astro_notebooks-0.1.0/src/astro_notebooks/__about__.py

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+# SPDX-FileCopyrightText: 2024-present Matt Craig <mattwcraig@gmail.com>
+#
+# SPDX-License-Identifier: MIT
+__version__ = "0.0.1"

astro_notebooks-0.1.0/src/astro_notebooks/__init__.py

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+# SPDX-FileCopyrightText: 2024-present Matt Craig <mattwcraig@gmail.com>
+#
+# SPDX-License-Identifier: MIT

astro_notebooks-0.1.0/src/astro_notebooks/_version.py

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+# file generated by setuptools_scm
+# don't change, don't track in version control
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple, Union
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+else:
+    VERSION_TUPLE = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+
+__version__ = version = '0.1.0'
+__version_tuple__ = version_tuple = (0, 1, 0)

astro_notebooks-0.1.0/src/astro_notebooks/image-viewers.ipynb

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+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Image viewing notebook"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 14,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import ipywidgets as widgets\n",
+    "\n",
+    "from astropy.table import Table\n",
+    "from astrowidgets import ImageWidget\n",
+    "from ccdproc import ImageFileCollection\n",
+    "from reducer.image_browser import ImageBrowser\n",
+    "from stellarphot.settings.fits_opener import FitsOpener"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## View all images in the current folder"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ifc = ImageFileCollection('.')\n",
+    "ib = ImageBrowser(ifc, keys=['imagetyp', 'object'])\n",
+    "ib"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Interactive view of a single image"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Make the viewer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "iw = ImageWidget()\n",
+    "fo = FitsOpener()\n",
+    "\n",
+    "def load_it(change):\n",
+    "    fo.load_in_image_widget(iw)\n",
+    "\n",
+    "fo.file_chooser.observe(load_it, names='_value')\n",
+    "\n",
+    "hb = widgets.HBox([iw, fo.file_chooser])\n",
+    "hb"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Choose an image to view"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.9"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

astro_notebooks-0.1.0/src/astro_notebooks/reproject-images.ipynb

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+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Reprojection template\n",
+    "\n",
+    "Use this when you want to change a series of images so that they are aligned with one of the imags."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from pathlib import Path\n",
+    "\n",
+    "import numpy as np\n",
+    "\n",
+    "from astropy.nddata import CCDData\n",
+    "from ccdproc import ImageFileCollection\n",
+    "from reproject import reproject_interp\n",
+    "from stellarphot.settings.fits_opener import FitsOpener"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Change the values here"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "image_folder = '.'  # '.' means the same folder as the notebook.\n",
+    "\n",
+    "ipath = Path(image_folder)\n",
+    "\n",
+    "# You can call this anything you want.\n",
+    "folder_for_shifted_images = 'shifted'\n",
+    "\n",
+    "# Subract median background value?\n",
+    "subtract_median = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Choose your \"reference\" image"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "fo = FitsOpener()\n",
+    "fo.file_chooser"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# This can be any one of the images. If one image is offset from all\n",
+    "# of the others do not choose that image.\n",
+    "reference_image = fo.file_chooser.value #'kelt-16-b-S001-R001-C004-r.fit'\n",
+    "print(reference_image)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Run the rest but you should not need to modify anything"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "p = Path(folder_for_shifted_images)\n",
+    "p.mkdir(exist_ok=True)\n",
+    "ccd_ref = CCDData.read(ipath / Path(reference_image).name)\n",
+    "wcs_ref = ccd_ref.wcs"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### This cell does this shifting. It will update as it completes images."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ifc = ImageFileCollection(image_folder)\n",
+    "\n",
+    "n_images = len(ifc.summary) + 1\n",
+    "i = 0\n",
+    "\n",
+    "for ccd, fname in ifc.ccds(return_fname=True):\n",
+    "    print(f'\\n{i} done 🎉, {n_images - i - 1} left\\n')\n",
+    "    i = i + 1\n",
+    "    print(f'\\tStarting to shift image {fname}...')\n",
+    "    outfile = p / fname\n",
+    "    if outfile.exists():\n",
+    "        print(f'\\t\\t...skipping because it is already shifted')\n",
+    "        continue\n",
+    "\n",
+    "    if subtract_median:\n",
+    "        median = np.nanmedian(ccd.data)\n",
+    "    else:\n",
+    "        median = 0\n",
+    "\n",
+    "    new_data, footprint = reproject_interp(ccd, wcs_ref,\n",
+    "                                           shape_out=ccd_ref.shape, order=1)\n",
+    "    ccd.data = new_data - median\n",
+    "    ccd.wcs = wcs_ref\n",
+    "    ccd.write(p / fname)\n",
+    "    print(f'\\t\\t...Finished shifting image')\n",
+    "\n",
+    "print('\\n🎉 All done ✨')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.9"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}