asbm 0.1.4.dev3__tar.gz → 0.1.4.dev5__tar.gz

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/.github/workflows/check-julia.yml

@@ -22,7 +22,7 @@ jobs:
         julia-version: ['1.10']
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
 
       - uses: julia-actions/setup-julia@v3
         with:

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/.github/workflows/check-r.yml

@@ -29,7 +29,7 @@ jobs:
         os: [ubuntu-latest, macos-14, windows-latest]
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
 
       - uses: r-lib/actions/setup-r@v2
         with:

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/.github/workflows/release.yml

@@ -21,7 +21,7 @@ jobs:
     name: Make SDist
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
         with:
           fetch-depth: 0
 
@@ -42,7 +42,7 @@ jobs:
         os: [macos-14, ubuntu-latest, windows-latest]
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
         with:
           fetch-depth: 0
 

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: asbm
-Version: 0.1.4.dev3
+Version: 0.1.4.dev5
 Summary: Find group structures in networks
 Author-Email: Maximilian Jerdee <mjerdee@umich.edu>
 License-Expression: MIT

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/bindings/r/DESCRIPTION

@@ -22,4 +22,4 @@ SystemRequirements: C++17
 Config/testthat/edition: 3
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3

asbm-0.1.4.dev5/bindings/r/NAMESPACE

@@ -0,0 +1,13 @@
+# Generated by roxygen2: do not edit by hand
+
+S3method(coincidence_matrix,asbm_result)
+S3method(consensus_partition,asbm_result)
+S3method(fit,default)
+S3method(fit,igraph)
+S3method(print,asbm_result)
+S3method(summary,asbm_result)
+export(coincidence_matrix)
+export(consensus_partition)
+export(fit)
+importFrom(Rcpp,sourceCpp)
+useDynLib(asbm, .registration = TRUE)

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/bindings/r/R/RcppExports.R

@@ -2,6 +2,6 @@
 # Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
 
 fit_backend_r <- function(num_nodes, from, to, weight, model = "asbm", degree_correction = TRUE, sweeps = 100L, burn_sweeps = 100L, num_chains = 2L, samples_per_chain = 100L, thinning = 1L, seed = 0L) {
-    .Call(`_asbm_fit_backend_r`, num_nodes, from, to, weight, model, degree_correction, sweeps, burn_sweeps, num_chains, samples_per_chain, thinning, seed)
+    .Call('_asbm_fit_backend_r', PACKAGE = 'asbm', num_nodes, from, to, weight, model, degree_correction, sweeps, burn_sweeps, num_chains, samples_per_chain, thinning, seed)
 }
 

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/bindings/r/R/asbm.R

@@ -1,3 +1,7 @@
+#' @useDynLib asbm, .registration = TRUE
+#' @importFrom Rcpp sourceCpp
+NULL
+
 #' Fit an assortative stochastic block model
 #'
 #' Dispatches on the class of `graph`. Use an igraph object as input.

asbm-0.1.4.dev5/bindings/r/man/coincidence_matrix.Rd

@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/asbm.R
+\name{coincidence_matrix}
+\alias{coincidence_matrix}
+\alias{coincidence_matrix.asbm_result}
+\title{Extract the coincidence matrix from an asbm_result}
+\usage{
+coincidence_matrix(x, ...)
+
+\method{coincidence_matrix}{asbm_result}(x, ...)
+}
+\arguments{
+\item{x}{An \code{asbm_result} object.}
+
+\item{...}{Currently unused.}
+}
+\value{
+A numeric n × n matrix.
+}
+\description{
+Extract the coincidence matrix from an asbm_result
+}

asbm-0.1.4.dev5/bindings/r/man/consensus_partition.Rd

@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/asbm.R
+\name{consensus_partition}
+\alias{consensus_partition}
+\alias{consensus_partition.asbm_result}
+\title{Extract the consensus partition from an asbm_result}
+\usage{
+consensus_partition(x, ...)
+
+\method{consensus_partition}{asbm_result}(x, ...)
+}
+\arguments{
+\item{x}{An \code{asbm_result} object.}
+
+\item{...}{Currently unused.}
+}
+\value{
+A 1-indexed integer vector of length n.
+}
+\description{
+Extract the consensus partition from an asbm_result
+}

asbm-0.1.4.dev5/bindings/r/man/fit.Rd

@@ -0,0 +1,77 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/asbm.R
+\name{fit}
+\alias{fit}
+\alias{fit.igraph}
+\alias{fit.default}
+\title{Fit an assortative stochastic block model}
+\usage{
+fit(graph, ...)
+
+\method{fit}{igraph}(
+  graph,
+  model = "asbm",
+  degree_correction = TRUE,
+  sweeps = 100,
+  burn_sweeps = 100,
+  num_chains = 2,
+  samples_per_chain = 100,
+  thinning = 1,
+  seed = 0,
+  ...
+)
+
+\method{fit}{default}(graph, ...)
+}
+\arguments{
+\item{graph}{An igraph graph (requires the \pkg{igraph} package).}
+
+\item{...}{Currently unused.}
+
+\item{model}{Character string selecting the model preset. One of
+\code{"asbm"} (default), \code{"simple_asbm"}, \code{"general_asbm"},
+\code{"hybrid_asbm"}, \code{"planted_partition"}, \code{"traditional_SBM"},
+\code{"traditional_DCSBM"}, \code{"traditional_GDCSBM"},
+\code{"microcanonical_SBM"}, \code{"microcanonical_DCSBM"}.}
+
+\item{degree_correction}{Logical. Whether to infer per-node degree
+correction parameters (default \code{TRUE}).}
+
+\item{sweeps}{Integer. Number of MCMC sweeps between collected samples.}
+
+\item{burn_sweeps}{Integer. Number of burn-in sweeps before sampling.}
+
+\item{num_chains}{Integer. Number of independent MCMC chains.}
+
+\item{samples_per_chain}{Integer. Samples collected per chain.}
+
+\item{thinning}{Integer. Additional sweeps between samples (total gap
+= \code{sweeps + thinning}; \code{thinning = 1} means no extra thinning).}
+
+\item{seed}{Integer random seed for reproducibility.}
+}
+\value{
+An \code{asbm_result} object (a named list) with components:
+\describe{
+\item{\code{mdl_value}}{Minimum description length value (double).}
+\item{\code{mdl_partition}}{MDL partition as a 1-indexed integer vector.}
+\item{\code{consensus_partition}}{Consensus partition (1-indexed).}
+\item{\code{coincidence_matrix}}{n × n numeric matrix of co-assignment
+fractions across samples.}
+\item{\code{samples}}{Data frame with one row per sample, containing
+chain metadata and per-node group assignments.}
+}
+}
+\description{
+Dispatches on the class of \code{graph}. Use an igraph object as input.
+The graph must have non-negative integer (or string) vertex names;
+edges are converted to 0-indexed integer IDs internally.
+}
+\examples{
+if (requireNamespace("igraph", quietly = TRUE)) {
+  G <- igraph::make_ring(10)
+  result <- fit(G, num_chains = 2, samples_per_chain = 10, seed = 42)
+  print(result)
+}
+
+}

{asbm-0.1.4.dev3 → asbm-0.1.4.dev5}/python/asbm/src/asbm/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '0.1.4.dev3'
-__version_tuple__ = version_tuple = (0, 1, 4, 'dev3')
+__version__ = version = '0.1.4.dev5'
+__version_tuple__ = version_tuple = (0, 1, 4, 'dev5')
 
-__commit_id__ = commit_id = 'gd2cbac3fd'
+__commit_id__ = commit_id = 'g8859c0a7a'

asbm-0.1.4.dev3/bindings/r/NAMESPACE

@@ -1,13 +0,0 @@
-# Generated by roxygen2: do not edit by hand
-
-export(fit)
-export(coincidence_matrix)
-export(consensus_partition)
-S3method(fit, igraph)
-S3method(fit, default)
-S3method(print, asbm_result)
-S3method(summary, asbm_result)
-S3method(coincidence_matrix, asbm_result)
-S3method(consensus_partition, asbm_result)
-importFrom(Rcpp, sourceCpp)
-useDynLib(asbm, .registration = TRUE)