arvados-python-client 2.7.3__tar.gz → 2.7.4__tar.gz

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Files changed (95) hide show
  1. {arvados-python-client-2.7.3/arvados_python_client.egg-info → arvados-python-client-2.7.4}/PKG-INFO +1 -1
  2. arvados-python-client-2.7.4/arvados/_version.py +1 -0
  3. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/api.py +2 -2
  4. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/arv_copy.py +6 -2
  5. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4/arvados_python_client.egg-info}/PKG-INFO +1 -1
  6. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_cmd_util.py +3 -1
  7. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_keep_client.py +10 -13
  8. arvados-python-client-2.7.3/arvados/_version.py +0 -1
  9. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/LICENSE-2.0.txt +0 -0
  10. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/MANIFEST.in +0 -0
  11. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/README.rst +0 -0
  12. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/__init__.py +0 -0
  13. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/_normalize_stream.py +0 -0
  14. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/_pycurlhelper.py +0 -0
  15. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/_ranges.py +0 -0
  16. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/arvfile.py +0 -0
  17. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/cache.py +0 -0
  18. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/collection.py +0 -0
  19. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/__init__.py +0 -0
  20. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/_util.py +0 -0
  21. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/federation_migrate.py +0 -0
  22. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/get.py +0 -0
  23. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/keepdocker.py +0 -0
  24. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/ls.py +0 -0
  25. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/migrate19.py +0 -0
  26. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/put.py +0 -0
  27. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/run.py +0 -0
  28. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/ws.py +0 -0
  29. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/config.py +0 -0
  30. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/crunch.py +0 -0
  31. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/diskcache.py +0 -0
  32. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/errors.py +0 -0
  33. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/events.py +0 -0
  34. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/http_to_keep.py +0 -0
  35. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/keep.py +0 -0
  36. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/logging.py +0 -0
  37. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/retry.py +0 -0
  38. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/safeapi.py +0 -0
  39. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/stream.py +0 -0
  40. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/timer.py +0 -0
  41. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/util.py +0 -0
  42. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/vocabulary.py +0 -0
  43. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados-v1-discovery.json +0 -0
  44. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/SOURCES.txt +0 -0
  45. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/dependency_links.txt +0 -0
  46. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/not-zip-safe +0 -0
  47. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/requires.txt +0 -0
  48. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/top_level.txt +0 -0
  49. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_version.py +0 -0
  50. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-copy +0 -0
  51. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-federation-migrate +0 -0
  52. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-get +0 -0
  53. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-keepdocker +0 -0
  54. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-ls +0 -0
  55. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-migrate-docker19 +0 -0
  56. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-normalize +0 -0
  57. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-put +0 -0
  58. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-ws +0 -0
  59. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/discovery2pydoc.py +0 -0
  60. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/setup.cfg +0 -0
  61. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/setup.py +0 -0
  62. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/__init__.py +0 -0
  63. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/arvados_testutil.py +0 -0
  64. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/keepstub.py +0 -0
  65. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/manifest_examples.py +0 -0
  66. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/__init__.py +0 -0
  67. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/performance_profiler.py +0 -0
  68. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/test_a_sample.py +0 -0
  69. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/run_test_server.py +0 -0
  70. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/slow_test.py +0 -0
  71. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_api.py +0 -0
  72. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_copy.py +0 -0
  73. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_get.py +0 -0
  74. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_keepdocker.py +0 -0
  75. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_ls.py +0 -0
  76. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_normalize.py +0 -0
  77. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_put.py +0 -0
  78. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_ws.py +0 -0
  79. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arvfile.py +0 -0
  80. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_benchmark_collections.py +0 -0
  81. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_cache.py +0 -0
  82. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_collections.py +0 -0
  83. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_crunch.py +0 -0
  84. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_errors.py +0 -0
  85. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_events.py +0 -0
  86. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_http.py +0 -0
  87. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_keep_locator.py +0 -0
  88. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_retry.py +0 -0
  89. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_retry_job_helpers.py +0 -0
  90. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_safeapi.py +0 -0
  91. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_sdk.py +0 -0
  92. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_storage_classes.py +0 -0
  93. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_stream.py +0 -0
  94. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_util.py +0 -0
  95. {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_vocabulary.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 1.1
2
2
  Name: arvados-python-client
3
- Version: 2.7.3
3
+ Version: 2.7.4
4
4
  Summary: Arvados client library
5
5
  Home-page: https://arvados.org
6
6
  Author: Arvados
@@ -0,0 +1 @@
1
+ __version__ = '2.7.4'
@@ -100,8 +100,8 @@ def _intercept_http_request(self, uri, method="GET", headers={}, **kwargs):
100
100
  self._last_request_time = time.time()
101
101
  try:
102
102
  response, body = self.orig_http_request(uri, method, headers=headers, **kwargs)
103
- except ssl.SSLCertVerificationError as e:
104
- raise ssl.SSLCertVerificationError(e.args[0], "Could not connect to %s\n%s\nPossible causes: remote SSL/TLS certificate expired, or was issued by an untrusted certificate authority." % (uri, e)) from None
103
+ except ssl.CertificateError as e:
104
+ raise ssl.CertificateError(e.args[0], "Could not connect to %s\n%s\nPossible causes: remote SSL/TLS certificate expired, or was issued by an untrusted certificate authority." % (uri, e)) from None
105
105
  # googleapiclient only retries 403, 429, and 5xx status codes.
106
106
  # If we got another 4xx status that we want to retry, convert it into
107
107
  # 5xx so googleapiclient handles it the way we want.
@@ -331,8 +331,12 @@ def copy_workflow(wf_uuid, src, dst, args):
331
331
  "ARVADOS_API_TOKEN": src.api_token,
332
332
  "PATH": os.environ["PATH"]}
333
333
  try:
334
- result = subprocess.run(["arvados-cwl-runner", "--quiet", "--print-keep-deps", "arvwf:"+wf_uuid],
335
- capture_output=True, env=env)
334
+ result = subprocess.run(
335
+ ["arvados-cwl-runner", "--quiet", "--print-keep-deps", "arvwf:"+wf_uuid],
336
+ env=env,
337
+ stdout=subprocess.PIPE,
338
+ universal_newlines=True,
339
+ )
336
340
  except FileNotFoundError:
337
341
  no_arv_copy = True
338
342
  else:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 1.1
2
2
  Name: arvados-python-client
3
- Version: 2.7.3
3
+ Version: 2.7.4
4
4
  Summary: Arvados client library
5
5
  Home-page: https://arvados.org
6
6
  Author: Arvados
@@ -162,7 +162,9 @@ class JSONArgumentTestCase(unittest.TestCase):
162
162
  finally:
163
163
  os.chmod(bad_file.fileno(), 0o600)
164
164
  else:
165
- ctx = contextlib.nullcontext
165
+ @contextlib.contextmanager
166
+ def ctx():
167
+ yield
166
168
  with self.assertRaisesRegex(ValueError, rf'^error reading JSON file path {str(path)!r}: '), ctx():
167
169
  self.parser(str(path))
168
170
 
@@ -1644,9 +1644,12 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
1644
1644
 
1645
1645
 
1646
1646
  def test_disk_cache_retry_write_error(self):
1647
- block_cache = arvados.keep.KeepBlockCache(disk_cache=True,
1648
- disk_cache_dir=self.disk_cache_dir)
1649
-
1647
+ cache_max_before = 512 * 1024 * 1024
1648
+ block_cache = arvados.keep.KeepBlockCache(
1649
+ cache_max=cache_max_before,
1650
+ disk_cache=True,
1651
+ disk_cache_dir=self.disk_cache_dir,
1652
+ )
1650
1653
  keep_client = arvados.KeepClient(api_client=self.api_client, block_cache=block_cache)
1651
1654
 
1652
1655
  called = False
@@ -1659,11 +1662,7 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
1659
1662
  else:
1660
1663
  return realmmap(*args, **kwargs)
1661
1664
 
1662
- with patch('mmap.mmap') as mockmmap:
1663
- mockmmap.side_effect = sideeffect_mmap
1664
-
1665
- cache_max_before = block_cache.cache_max
1666
-
1665
+ with patch('mmap.mmap', autospec=True, side_effect=sideeffect_mmap) as mockmmap:
1667
1666
  with tutil.mock_keep_responses(self.data, 200) as mock:
1668
1667
  self.assertTrue(tutil.binary_compare(keep_client.get(self.locator), self.data))
1669
1668
 
@@ -1673,7 +1672,7 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
1673
1672
  self.assertTrue(tutil.binary_compare(f.read(), self.data))
1674
1673
 
1675
1674
  # shrank the cache in response to ENOSPC
1676
- self.assertTrue(cache_max_before > block_cache.cache_max)
1675
+ self.assertGreater(cache_max_before, block_cache.cache_max)
1677
1676
 
1678
1677
 
1679
1678
  def test_disk_cache_retry_write_error2(self):
@@ -1692,9 +1691,7 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
1692
1691
  else:
1693
1692
  return realmmap(*args, **kwargs)
1694
1693
 
1695
- with patch('mmap.mmap') as mockmmap:
1696
- mockmmap.side_effect = sideeffect_mmap
1697
-
1694
+ with patch('mmap.mmap', autospec=True, side_effect=sideeffect_mmap) as mockmmap:
1698
1695
  slots_before = block_cache._max_slots
1699
1696
 
1700
1697
  with tutil.mock_keep_responses(self.data, 200) as mock:
@@ -1706,4 +1703,4 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
1706
1703
  self.assertTrue(tutil.binary_compare(f.read(), self.data))
1707
1704
 
1708
1705
  # shrank the cache in response to ENOMEM
1709
- self.assertTrue(slots_before > block_cache._max_slots)
1706
+ self.assertGreater(slots_before, block_cache._max_slots)
@@ -1 +0,0 @@
1
- __version__ = '2.7.3'