arvados-python-client 2.7.3__tar.gz → 2.7.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {arvados-python-client-2.7.3/arvados_python_client.egg-info → arvados-python-client-2.7.4}/PKG-INFO +1 -1
- arvados-python-client-2.7.4/arvados/_version.py +1 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/api.py +2 -2
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/arv_copy.py +6 -2
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4/arvados_python_client.egg-info}/PKG-INFO +1 -1
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_cmd_util.py +3 -1
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_keep_client.py +10 -13
- arvados-python-client-2.7.3/arvados/_version.py +0 -1
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/LICENSE-2.0.txt +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/MANIFEST.in +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/README.rst +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/__init__.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/_normalize_stream.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/_pycurlhelper.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/_ranges.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/arvfile.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/cache.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/collection.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/__init__.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/_util.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/federation_migrate.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/get.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/keepdocker.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/ls.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/migrate19.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/put.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/run.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/ws.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/config.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/crunch.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/diskcache.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/errors.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/events.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/http_to_keep.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/keep.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/logging.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/retry.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/safeapi.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/stream.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/timer.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/util.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/vocabulary.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados-v1-discovery.json +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/SOURCES.txt +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/dependency_links.txt +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/not-zip-safe +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/requires.txt +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_python_client.egg-info/top_level.txt +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados_version.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-copy +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-federation-migrate +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-get +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-keepdocker +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-ls +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-migrate-docker19 +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-normalize +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-put +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/bin/arv-ws +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/discovery2pydoc.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/setup.cfg +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/setup.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/__init__.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/arvados_testutil.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/keepstub.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/manifest_examples.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/__init__.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/performance_profiler.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/test_a_sample.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/run_test_server.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/slow_test.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_api.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_copy.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_get.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_keepdocker.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_ls.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_normalize.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_put.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arv_ws.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_arvfile.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_benchmark_collections.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_cache.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_collections.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_crunch.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_errors.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_events.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_http.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_keep_locator.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_retry.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_retry_job_helpers.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_safeapi.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_sdk.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_storage_classes.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_stream.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_util.py +0 -0
- {arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_vocabulary.py +0 -0
|
@@ -0,0 +1 @@
|
|
|
1
|
+
__version__ = '2.7.4'
|
|
@@ -100,8 +100,8 @@ def _intercept_http_request(self, uri, method="GET", headers={}, **kwargs):
|
|
|
100
100
|
self._last_request_time = time.time()
|
|
101
101
|
try:
|
|
102
102
|
response, body = self.orig_http_request(uri, method, headers=headers, **kwargs)
|
|
103
|
-
except ssl.
|
|
104
|
-
raise ssl.
|
|
103
|
+
except ssl.CertificateError as e:
|
|
104
|
+
raise ssl.CertificateError(e.args[0], "Could not connect to %s\n%s\nPossible causes: remote SSL/TLS certificate expired, or was issued by an untrusted certificate authority." % (uri, e)) from None
|
|
105
105
|
# googleapiclient only retries 403, 429, and 5xx status codes.
|
|
106
106
|
# If we got another 4xx status that we want to retry, convert it into
|
|
107
107
|
# 5xx so googleapiclient handles it the way we want.
|
|
@@ -331,8 +331,12 @@ def copy_workflow(wf_uuid, src, dst, args):
|
|
|
331
331
|
"ARVADOS_API_TOKEN": src.api_token,
|
|
332
332
|
"PATH": os.environ["PATH"]}
|
|
333
333
|
try:
|
|
334
|
-
result = subprocess.run(
|
|
335
|
-
|
|
334
|
+
result = subprocess.run(
|
|
335
|
+
["arvados-cwl-runner", "--quiet", "--print-keep-deps", "arvwf:"+wf_uuid],
|
|
336
|
+
env=env,
|
|
337
|
+
stdout=subprocess.PIPE,
|
|
338
|
+
universal_newlines=True,
|
|
339
|
+
)
|
|
336
340
|
except FileNotFoundError:
|
|
337
341
|
no_arv_copy = True
|
|
338
342
|
else:
|
|
@@ -162,7 +162,9 @@ class JSONArgumentTestCase(unittest.TestCase):
|
|
|
162
162
|
finally:
|
|
163
163
|
os.chmod(bad_file.fileno(), 0o600)
|
|
164
164
|
else:
|
|
165
|
-
|
|
165
|
+
@contextlib.contextmanager
|
|
166
|
+
def ctx():
|
|
167
|
+
yield
|
|
166
168
|
with self.assertRaisesRegex(ValueError, rf'^error reading JSON file path {str(path)!r}: '), ctx():
|
|
167
169
|
self.parser(str(path))
|
|
168
170
|
|
|
@@ -1644,9 +1644,12 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
|
|
|
1644
1644
|
|
|
1645
1645
|
|
|
1646
1646
|
def test_disk_cache_retry_write_error(self):
|
|
1647
|
-
|
|
1648
|
-
|
|
1649
|
-
|
|
1647
|
+
cache_max_before = 512 * 1024 * 1024
|
|
1648
|
+
block_cache = arvados.keep.KeepBlockCache(
|
|
1649
|
+
cache_max=cache_max_before,
|
|
1650
|
+
disk_cache=True,
|
|
1651
|
+
disk_cache_dir=self.disk_cache_dir,
|
|
1652
|
+
)
|
|
1650
1653
|
keep_client = arvados.KeepClient(api_client=self.api_client, block_cache=block_cache)
|
|
1651
1654
|
|
|
1652
1655
|
called = False
|
|
@@ -1659,11 +1662,7 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
|
|
|
1659
1662
|
else:
|
|
1660
1663
|
return realmmap(*args, **kwargs)
|
|
1661
1664
|
|
|
1662
|
-
with patch('mmap.mmap') as mockmmap:
|
|
1663
|
-
mockmmap.side_effect = sideeffect_mmap
|
|
1664
|
-
|
|
1665
|
-
cache_max_before = block_cache.cache_max
|
|
1666
|
-
|
|
1665
|
+
with patch('mmap.mmap', autospec=True, side_effect=sideeffect_mmap) as mockmmap:
|
|
1667
1666
|
with tutil.mock_keep_responses(self.data, 200) as mock:
|
|
1668
1667
|
self.assertTrue(tutil.binary_compare(keep_client.get(self.locator), self.data))
|
|
1669
1668
|
|
|
@@ -1673,7 +1672,7 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
|
|
|
1673
1672
|
self.assertTrue(tutil.binary_compare(f.read(), self.data))
|
|
1674
1673
|
|
|
1675
1674
|
# shrank the cache in response to ENOSPC
|
|
1676
|
-
self.
|
|
1675
|
+
self.assertGreater(cache_max_before, block_cache.cache_max)
|
|
1677
1676
|
|
|
1678
1677
|
|
|
1679
1678
|
def test_disk_cache_retry_write_error2(self):
|
|
@@ -1692,9 +1691,7 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
|
|
|
1692
1691
|
else:
|
|
1693
1692
|
return realmmap(*args, **kwargs)
|
|
1694
1693
|
|
|
1695
|
-
with patch('mmap.mmap') as mockmmap:
|
|
1696
|
-
mockmmap.side_effect = sideeffect_mmap
|
|
1697
|
-
|
|
1694
|
+
with patch('mmap.mmap', autospec=True, side_effect=sideeffect_mmap) as mockmmap:
|
|
1698
1695
|
slots_before = block_cache._max_slots
|
|
1699
1696
|
|
|
1700
1697
|
with tutil.mock_keep_responses(self.data, 200) as mock:
|
|
@@ -1706,4 +1703,4 @@ class KeepDiskCacheTestCase(unittest.TestCase, tutil.ApiClientMock):
|
|
|
1706
1703
|
self.assertTrue(tutil.binary_compare(f.read(), self.data))
|
|
1707
1704
|
|
|
1708
1705
|
# shrank the cache in response to ENOMEM
|
|
1709
|
-
self.
|
|
1706
|
+
self.assertGreater(slots_before, block_cache._max_slots)
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
__version__ = '2.7.3'
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/arvados/commands/federation_migrate.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/performance/test_a_sample.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{arvados-python-client-2.7.3 → arvados-python-client-2.7.4}/tests/test_benchmark_collections.py
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|