arrayview 0.28.0__tar.gz → 0.29.0__tar.gz

{arrayview-0.28.0 → arrayview-0.29.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: arrayview
-Version: 0.28.0
+Version: 0.29.0
 Summary: Fast multi-dimensional array viewer
 Project-URL: Home, https://github.com/oscarvanderheide/arrayview
 Project-URL: Source, https://github.com/oscarvanderheide/arrayview

{arrayview-0.28.0 → arrayview-0.29.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "arrayview"
-version = "0.28.0"
+version = "0.29.0"
 description = "Fast multi-dimensional array viewer"
 readme = { file = "README.md", content-type = "text/markdown" }
 requires-python = ">=3.12"

{arrayview-0.28.0 → arrayview-0.29.0}/src/arrayview/_analysis.py

@@ -67,8 +67,10 @@ def _safe_float(v) -> float | None:
     return f if np.isfinite(f) else None
 
 
-def _histogram_payload(finite: np.ndarray, bins: int, log_bins: bool = False) -> dict:
+def _histogram_payload(finite: np.ndarray, bins: int, log_bins: bool = False, exclude_zeros: bool = False) -> dict:
     """Build a histogram response from finite values."""
+    if exclude_zeros:
+        finite = finite[finite != 0]
     if finite.size == 0:
         return {"counts": [], "edges": [], "vmin": 0.0, "vmax": 1.0}
     vmin = float(finite.min())
@@ -172,6 +174,7 @@ def _volume_histogram(
     complex_mode: int = 0,
     bins: int = 64,
     qmri_role: str = "",
+    exclude_zeros: bool = False,
 ) -> dict:
     """Return a sampled volume histogram."""
     fixed = _parse_fixed_indices(fixed_indices)
@@ -189,6 +192,7 @@ def _volume_histogram(
         qmri_role,
         bins,
         log_bins,
+        exclude_zeros,
     )
     if not hasattr(session, "_volume_hist_cache"):
         session._volume_hist_cache = {}
@@ -234,7 +238,9 @@ def _volume_histogram(
             pixels.append(finite)
 
     if pixels:
-        result = _histogram_payload(np.concatenate(pixels), bins, log_bins=log_bins)
+        result = _histogram_payload(
+            np.concatenate(pixels), bins, log_bins=log_bins, exclude_zeros=exclude_zeros
+        )
     else:
         result = {"counts": [], "edges": [], "vmin": 0.0, "vmax": 1.0}
     session._volume_hist_cache[cache_key] = {

{arrayview-0.28.0 → arrayview-0.29.0}/src/arrayview/_launcher.py

@@ -1616,6 +1616,9 @@ _CLI_DAEMON_CONNECT_TIMEOUT_SECONDS = 20.0
 # closes. Keeping a warm idle daemon around caused native-window sessions to
 # appear orphaned after close.
 _CLI_DAEMON_IDLE_SECONDS = 0.0
+_PERSIST_DAEMON_IDLE_SECONDS = float(
+    os.environ.get("ARRAYVIEW_PERSIST_IDLE_SECONDS", "1800")
+)
 
 
 def _join_query_values(values: _CSVValues) -> str:
@@ -2842,11 +2845,10 @@ def _serve_daemon(
     threading.Thread(target=_load, daemon=True).start()
 
     if persist:
-        try:
-            while True:
-                time.sleep(1)
-        except KeyboardInterrupt:
-            pass
+        _wait_for_viewer_close(
+            idle_seconds=_PERSIST_DAEMON_IDLE_SECONDS,
+            connect_timeout=None,
+        )
     else:
         # Transient CLI launches should stop as soon as the last viewer is
         # really gone, aside from the short grace period inside

{arrayview-0.28.0 → arrayview-0.29.0}/src/arrayview/_routes_analysis.py

@@ -465,6 +465,7 @@ def register_analysis_routes(app, get_session_or_404) -> None:
         complex_mode: int = 0,
         bins: int = 64,
         qmri_role: str = "",
+        exclude_zeros: int = 0,
         session=Depends(get_session_or_404),
     ):
         return _volume_histogram(
@@ -477,6 +478,7 @@ def register_analysis_routes(app, get_session_or_404) -> None:
             complex_mode,
             bins,
             qmri_role,
+            exclude_zeros=bool(exclude_zeros),
         )
 
     @app.get("/volume_data/{sid}")