arrayview 0.10.0__tar.gz → 0.11.0__tar.gz

{arrayview-0.10.0 → arrayview-0.11.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: arrayview
-Version: 0.10.0
+Version: 0.11.0
 Summary: Fast multi-dimensional array viewer
 Project-URL: Home, https://github.com/oscarvanderheide/arrayview
 Project-URL: Source, https://github.com/oscarvanderheide/arrayview
@@ -35,6 +35,8 @@ Description-Content-Type: text/markdown
 
 # arrayview
 
+[![Documentation](https://img.shields.io/badge/docs-oscarvanderheide.github.io/arrayview-blue)](https://oscarvanderheide.github.io/arrayview/)
+
 A viewer for multi-dimensional arrays.
 
 - CLI and Python
@@ -133,4 +135,3 @@ colormaps = ["gray", "viridis", "plasma"]   # colormaps cycled by 'c'
 default = "browser"                         # browser | native | vscode | inline
 ```
 
-[Full documentation →](https://oscarvanderheide.github.io/arrayview/)

{arrayview-0.10.0 → arrayview-0.11.0}/README.md

@@ -1,5 +1,7 @@
 # arrayview
 
+[![Documentation](https://img.shields.io/badge/docs-oscarvanderheide.github.io/arrayview-blue)](https://oscarvanderheide.github.io/arrayview/)
+
 A viewer for multi-dimensional arrays.
 
 - CLI and Python
@@ -98,4 +100,3 @@ colormaps = ["gray", "viridis", "plasma"]   # colormaps cycled by 'c'
 default = "browser"                         # browser | native | vscode | inline
 ```
 
-[Full documentation →](https://oscarvanderheide.github.io/arrayview/)

{arrayview-0.10.0 → arrayview-0.11.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "arrayview"
-version = "0.10.0"
+version = "0.11.0"
 description = "Fast multi-dimensional array viewer"
 readme = { file = "README.md", content-type = "text/markdown" }
 requires-python = ">=3.12"

{arrayview-0.10.0 → arrayview-0.11.0}/src/arrayview/_config.py

@@ -41,6 +41,21 @@ def get_viewer_colormaps() -> list[str] | None:
     return None
 
 
+_VALID_THEMES = {"dark", "light", "solarized", "nord"}
+
+
+def get_viewer_theme() -> str | None:
+    """Return user-configured default theme name, or None if not configured."""
+    cfg = load_config()
+    viewer_cfg = cfg.get("viewer", {})
+    if not isinstance(viewer_cfg, dict):
+        return None
+    theme = viewer_cfg.get("theme")
+    if isinstance(theme, str) and theme.strip().lower() in _VALID_THEMES:
+        return theme.strip().lower()
+    return None
+
+
 def get_nninteractive_url() -> str | None:
     """Return configured nnInteractive server URL, or None.
 

{arrayview-0.10.0 → arrayview-0.11.0}/src/arrayview/_io.py

@@ -133,7 +133,13 @@ def load_data(filepath):
         if len(keys) == 1:
             return npz[keys[0]]
         return _select_npz_array(npz, filepath)
-    elif filepath.endswith(".nii") or filepath.endswith(".nii.gz"):
+    elif filepath.endswith(".nii.gz"):
+        # Gzip streams aren't seekable, so nibabel's lazy dataobj decompresses
+        # large portions of the file on every arbitrary slice access. Materialize
+        # the volume up front so subsequent slicing is cheap.
+        return np.asarray(_nib().load(filepath).dataobj)
+    elif filepath.endswith(".nii"):
+        # Uncompressed NIfTI is memory-mapped via dataobj — slicing is cheap.
         return _nib().load(filepath).dataobj
     elif filepath.endswith(".zarr") or filepath.endswith(".zarr.zip"):
         import zarr

{arrayview-0.10.0 → arrayview-0.11.0}/src/arrayview/_render.py

@@ -111,7 +111,10 @@ def _compute_vmin_vmax(session, data, dr=0, complex_mode=0):
 
 
 def extract_slice(session, dim_x, dim_y, idx_list):
-    key = (dim_x, dim_y, tuple(idx_list))
+    # Mask out indices along the displayed dims — they're slice(None) in the
+    # slicer below, so the extracted data doesn't depend on them.
+    key_idx = tuple(None if i in (dim_x, dim_y) else idx_list[i] for i in range(len(idx_list)))
+    key = (dim_x, dim_y, key_idx)
     if key in session.raw_cache:
         session.raw_cache.move_to_end(key)
         return session.raw_cache[key]
@@ -154,7 +157,12 @@ def extract_projection(session, dim_x, dim_y, idx_list, proj_dim, proj_mode):
 
     proj_mode: 1=max, 2=min, 3=mean, 4=std, 5=sos (sum of squares)
     """
-    key = ("proj", dim_x, dim_y, tuple(idx_list), proj_dim, proj_mode)
+    # Mask out indices along the displayed/projected dims — they're slice(None).
+    key_idx = tuple(
+        None if i in (dim_x, dim_y, proj_dim) else idx_list[i]
+        for i in range(len(idx_list))
+    )
+    key = ("proj", dim_x, dim_y, key_idx, proj_dim, proj_mode)
     if key in session.raw_cache:
         session.raw_cache.move_to_end(key)
         return session.raw_cache[key]