arctrl 3.0.5__tar.gz → 3.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {arctrl-3.0.5 → arctrl-3.1.0}/PKG-INFO +1 -1
- {arctrl-3.0.5 → arctrl-3.1.0}/pyproject.toml +1 -1
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/__init__.py +2 -1
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/decode.py +84 -84
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/encode.py +30 -30
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/hash_helpers.py +3 -3
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/outputs.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/parameter_reference.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/requirements.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/CWL/workflow_steps.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/arc_assay.py +9 -9
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/arc_investigation.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/arc_run.py +16 -16
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/arc_study.py +9 -9
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/arc_workflow.py +16 -16
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/contract.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/datamap.py +24 -24
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/git.py +17 -17
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/license.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Contract/validation_packages_config.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ContractIO/contract_io.py +121 -113
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ContractIO/file_system_helper.py +62 -62
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/assay.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/basic.py +5 -5
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/column_index.py +3 -3
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/datamap.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/date_time.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/investigation.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/person.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/process.py +127 -127
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/run.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/scholarly_article.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/study.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/table.py +9 -9
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Conversion/workflow.py +31 -31
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Process/component.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Process/process.py +20 -20
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Process/process_sequence.py +43 -43
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Process/protocol_parameter.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Table/arc_table.py +128 -128
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Table/arc_tables.py +49 -42
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Table/composite_cell.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Table/composite_column.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/Table/composite_header.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/arc_types.py +622 -622
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/comment.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/comment_list.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/conversion.py +100 -100
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/datamap.py +9 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/ontology_annotation.py +28 -28
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/template.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Core/templates.py +26 -26
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/FileSystem/file_system.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Datamap/data_context.py +24 -24
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Datamap/datamap.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/assay_materials.py +5 -5
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/component.py +22 -22
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/factor.py +19 -19
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/factor_value.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/material.py +46 -46
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/material_attribute.py +13 -13
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/material_attribute_value.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/material_type.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/process.py +70 -70
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/process_input.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/process_output.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/process_parameter_value.py +14 -14
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/protocol.py +75 -75
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/protocol_parameter.py +13 -13
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/sample.py +44 -44
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/source.py +35 -35
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/study_materials.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Process/value.py +11 -11
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ROCrate/ldcontext.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ROCrate/ldgraph.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ROCrate/ldnode.py +64 -64
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ROCrate/ldref.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ROCrate/ldvalue.py +23 -23
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/arc_table.py +85 -85
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/cell_table.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/composite_cell.py +25 -25
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/composite_header.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/oatable.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/Table/templates.py +65 -65
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/assay.py +141 -141
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/comment.py +48 -48
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_assay_context.py +19 -19
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_comment_context.py +11 -11
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_component_context.py +15 -15
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_data_context.py +13 -13
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_factor_context.py +14 -14
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_factor_value_context.py +17 -17
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_investigation_context.py +21 -21
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_material_attribute_context.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +16 -16
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_material_context.py +13 -13
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_ontology_annotation_context.py +13 -13
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_ontology_source_reference_context.py +14 -14
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_organization_context.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_person_context.py +28 -28
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_process_context.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_process_parameter_value_context.py +16 -16
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_context.py +19 -19
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_publication_context.py +15 -15
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_sample_context.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_source_context.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/isa_study_context.py +20 -20
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/property_value_context.py +17 -17
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/context/rocrate/rocrate_context.py +18 -18
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/converter_options.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/data.py +88 -88
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/data_file.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/decode.py +22 -22
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/encode.py +16 -16
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/idtable.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/investigation.py +174 -174
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ontology_annotation.py +96 -96
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/ontology_source_reference.py +68 -68
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/person.py +164 -164
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/property_value.py +48 -48
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/publication.py +71 -71
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/run.py +72 -72
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/string_table.py +15 -15
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/study.py +192 -192
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/Json/workflow.py +84 -84
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/component.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/factor.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/factor_value.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/material.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/material_attribute.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/material_attribute_value.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/material_type.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/process.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/process_input.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/process_output.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/process_parameter_value.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/process_sequence.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/protocol.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/protocol_parameter.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/sample.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/source.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/study_materials.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Process/value.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Table/arc_table.py +12 -12
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Table/composite_cell.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Table/composite_header.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Table/compression.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Table/iotype.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/Table/templates.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/assay.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/comment.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/data.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/data_file.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/datamap.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/investigation.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/ldobject.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/ontology_annotation.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/ontology_source_reference.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/person.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/publication.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/run.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/study.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/JsonIO/workflow.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/assay.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/data.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/dataset.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/investigation.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/lab_process.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/lab_protocol.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/person.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/sample.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/scholarly_article.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/ISAProfile/study.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/comment.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/computational_workflow.py +4 -4
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/computer_language.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/create_action.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/creative_work.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/dataset.py +31 -31
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/defined_term.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/file.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/formal_parameter.py +6 -6
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/lab_process.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/lab_protocol.py +14 -14
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/organization.py +2 -2
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/person.py +8 -8
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/postal_address.py +10 -10
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/property_value.py +47 -47
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/sample.py +14 -14
- {arctrl-3.0.5 → arctrl-3.1.0}/src/ARCtrl/py/ROCrate/LDTypes/scholarly_article.py +4 -4
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|
|
|
1371
1371
|
|
|
1372
|
-
return EnvironmentDef(_arg_2.fields[0].Value,
|
|
1372
|
+
return EnvironmentDef(_arg_2.fields[0].Value, _arrow929())
|
|
1373
1373
|
|
|
1374
1374
|
else:
|
|
1375
1375
|
return None
|
|
@@ -1431,57 +1431,57 @@ def Decode_softwareRequirementDecoder(get: IGetters) -> Array[SoftwarePackage]:
|
|
|
1431
1431
|
return other
|
|
1432
1432
|
|
|
1433
1433
|
|
|
1434
|
-
def
|
|
1434
|
+
def _arrow930(__unit: None=None, get: Any=get) -> YAMLElement:
|
|
1435
1435
|
object_arg: IRequiredGetter = get.Required
|
|
1436
1436
|
def arg_1(x: YAMLElement) -> YAMLElement:
|
|
1437
1437
|
return x
|
|
1438
1438
|
|
|
1439
1439
|
return object_arg.Field("packages", arg_1)
|
|
1440
1440
|
|
|
1441
|
-
packages_element: YAMLElement = normalize_collection_element(
|
|
1441
|
+
packages_element: YAMLElement = normalize_collection_element(_arrow930())
|
|
1442
1442
|
def decode_specs_array(element: YAMLElement, get: Any=get) -> Array[str]:
|
|
1443
|
-
def
|
|
1443
|
+
def _arrow931(y_ele: YAMLElement, element: Any=element) -> str:
|
|
1444
1444
|
return Decode_decodeStringOrExpression(y_ele)
|
|
1445
1445
|
|
|
1446
|
-
return resizearray(
|
|
1446
|
+
return resizearray(_arrow931, normalize_collection_element(element))
|
|
1447
1447
|
|
|
1448
1448
|
if packages_element.tag == 2:
|
|
1449
|
-
def
|
|
1449
|
+
def _arrow937(value_5: YAMLElement, get: Any=get) -> SoftwarePackage:
|
|
1450
1450
|
def getter(get2: IGetters) -> SoftwarePackage:
|
|
1451
|
-
def
|
|
1451
|
+
def _arrow932(__unit: None=None, get2: Any=get2) -> str:
|
|
1452
1452
|
object_arg_1: IRequiredGetter = get2.Required
|
|
1453
1453
|
return object_arg_1.Field("package", string)
|
|
1454
1454
|
|
|
1455
|
-
def
|
|
1455
|
+
def _arrow934(__unit: None=None, get2: Any=get2) -> Array[str] | None:
|
|
1456
1456
|
object_arg_2: IOptionalGetter = get2.Optional
|
|
1457
1457
|
def arg_5(value_1: YAMLElement) -> Array[str]:
|
|
1458
|
-
def
|
|
1458
|
+
def _arrow933(value_2: YAMLElement, value_1: Any=value_1) -> str:
|
|
1459
1459
|
return string(value_2)
|
|
1460
1460
|
|
|
1461
|
-
return resizearray(
|
|
1461
|
+
return resizearray(_arrow933, value_1)
|
|
1462
1462
|
|
|
1463
1463
|
return object_arg_2.Field("version", arg_5)
|
|
1464
1464
|
|
|
1465
|
-
def
|
|
1465
|
+
def _arrow936(__unit: None=None, get2: Any=get2) -> Array[str] | None:
|
|
1466
1466
|
object_arg_3: IOptionalGetter = get2.Optional
|
|
1467
1467
|
def arg_7(value_3: YAMLElement) -> Array[str]:
|
|
1468
|
-
def
|
|
1468
|
+
def _arrow935(value_4: YAMLElement, value_3: Any=value_3) -> str:
|
|
1469
1469
|
return string(value_4)
|
|
1470
1470
|
|
|
1471
|
-
return resizearray(
|
|
1471
|
+
return resizearray(_arrow935, value_3)
|
|
1472
1472
|
|
|
1473
1473
|
return object_arg_3.Field("specs", arg_7)
|
|
1474
1474
|
|
|
1475
|
-
return SoftwarePackage(
|
|
1475
|
+
return SoftwarePackage(_arrow932(), _arrow934(), _arrow936())
|
|
1476
1476
|
|
|
1477
1477
|
return object(getter, value_5)
|
|
1478
1478
|
|
|
1479
|
-
return resizearray(
|
|
1479
|
+
return resizearray(_arrow937, packages_element)
|
|
1480
1480
|
|
|
1481
1481
|
elif packages_element.tag == 3:
|
|
1482
1482
|
def chooser_2(_arg_3: YAMLElement, get: Any=get) -> SoftwarePackage | None:
|
|
1483
1483
|
if _arg_3.tag == 0:
|
|
1484
|
-
def
|
|
1484
|
+
def _arrow938(__unit: None=None, _arg_3: Any=_arg_3) -> SoftwarePackage:
|
|
1485
1485
|
package_name: str = _arg_3.fields[0].Value
|
|
1486
1486
|
package_value: YAMLElement = _arg_3.fields[1]
|
|
1487
1487
|
normalized_package_value: YAMLElement = normalize_collection_element(package_value)
|
|
@@ -1531,7 +1531,7 @@ def Decode_softwareRequirementDecoder(get: IGetters) -> Array[SoftwarePackage]:
|
|
|
1531
1531
|
|
|
1532
1532
|
return (SoftwarePackage(package_name, None, None) if is_empty(normalized_package_value.fields[0]) else SoftwarePackage(package_name, try_pick(chooser, normalized_package_value.fields[0]), try_pick(chooser_1, normalized_package_value.fields[0]))) if (normalized_package_value.tag == 3) else (SoftwarePackage(package_name, None, decode_specs_array(normalized_package_value)) if (normalized_package_value.tag == 2) else SoftwarePackage(package_name, None, [Decode_decodeStringOrExpression(package_value)]))
|
|
1533
1533
|
|
|
1534
|
-
return
|
|
1534
|
+
return _arrow938()
|
|
1535
1535
|
|
|
1536
1536
|
else:
|
|
1537
1537
|
return None
|
|
@@ -1577,10 +1577,10 @@ def Decode_initialWorkDirRequirementDecoder(get: IGetters) -> Array[InitialWorkD
|
|
|
1577
1577
|
pattern_matching_result = 1
|
|
1578
1578
|
|
|
1579
1579
|
if pattern_matching_result == 0:
|
|
1580
|
-
def
|
|
1580
|
+
def _arrow939(value: YAMLElement, get: Any=get) -> InitialWorkDirEntry:
|
|
1581
1581
|
return Decode_initialWorkDirEntryDecoder(value)
|
|
1582
1582
|
|
|
1583
|
-
return resizearray(
|
|
1583
|
+
return resizearray(_arrow939, listing_element)
|
|
1584
1584
|
|
|
1585
1585
|
elif pattern_matching_result == 1:
|
|
1586
1586
|
return [Decode_initialWorkDirEntryDecoder(listing_element)]
|
|
@@ -1588,12 +1588,12 @@ def Decode_initialWorkDirRequirementDecoder(get: IGetters) -> Array[InitialWorkD
|
|
|
1588
1588
|
|
|
1589
1589
|
|
|
1590
1590
|
def Decode_loadListingRequirementDecoder(get: IGetters) -> LoadListingRequirementValue:
|
|
1591
|
-
def
|
|
1591
|
+
def _arrow940(__unit: None=None, get: Any=get) -> str | None:
|
|
1592
1592
|
object_arg: IOptionalGetter = get.Optional
|
|
1593
1593
|
return object_arg.Field("loadListing", string)
|
|
1594
1594
|
|
|
1595
|
-
load_listing_value: str = default_arg(
|
|
1596
|
-
def
|
|
1595
|
+
load_listing_value: str = default_arg(_arrow940(), "no_listing")
|
|
1596
|
+
def _arrow941(__unit: None=None, get: Any=get) -> LoadListingEnum:
|
|
1597
1597
|
match_value: LoadListingEnum | None = LoadListingEnum_tryParse_Z721C83C5(load_listing_value)
|
|
1598
1598
|
if match_value is None:
|
|
1599
1599
|
raise Exception(("Invalid loadListing value \'" + load_listing_value) + "\'. Expected one of: no_listing, shallow_listing, deep_listing.")
|
|
@@ -1602,7 +1602,7 @@ def Decode_loadListingRequirementDecoder(get: IGetters) -> LoadListingRequiremen
|
|
|
1602
1602
|
return match_value
|
|
1603
1603
|
|
|
1604
1604
|
|
|
1605
|
-
return LoadListingRequirementValue(
|
|
1605
|
+
return LoadListingRequirementValue(_arrow941())
|
|
1606
1606
|
|
|
1607
1607
|
|
|
1608
1608
|
def Decode_decodeResourceScalar(element: YAMLElement) -> Any:
|
|
@@ -1648,28 +1648,28 @@ def Decode_decodeResourceScalar(element: YAMLElement) -> Any:
|
|
|
1648
1648
|
scalar_value: str = match_value
|
|
1649
1649
|
match_value_1: tuple[bool, int64]
|
|
1650
1650
|
out_arg: int64 = int64(0)
|
|
1651
|
-
def
|
|
1651
|
+
def _arrow942(__unit: None=None, element: Any=element) -> int64:
|
|
1652
1652
|
return out_arg
|
|
1653
1653
|
|
|
1654
|
-
def
|
|
1654
|
+
def _arrow943(v: int64, element: Any=element) -> None:
|
|
1655
1655
|
nonlocal out_arg
|
|
1656
1656
|
out_arg = v
|
|
1657
1657
|
|
|
1658
|
-
match_value_1 = (try_parse(scalar_value, 7, False, 64, FSharpRef(
|
|
1658
|
+
match_value_1 = (try_parse(scalar_value, 7, False, 64, FSharpRef(_arrow942, _arrow943)), out_arg)
|
|
1659
1659
|
if match_value_1[0]:
|
|
1660
1660
|
return match_value_1[1]
|
|
1661
1661
|
|
|
1662
1662
|
else:
|
|
1663
1663
|
match_value_2: tuple[bool, float]
|
|
1664
1664
|
out_arg_1: float = 0.0
|
|
1665
|
-
def
|
|
1665
|
+
def _arrow944(__unit: None=None, element: Any=element) -> float:
|
|
1666
1666
|
return out_arg_1
|
|
1667
1667
|
|
|
1668
|
-
def
|
|
1668
|
+
def _arrow945(v_1: float, element: Any=element) -> None:
|
|
1669
1669
|
nonlocal out_arg_1
|
|
1670
1670
|
out_arg_1 = v_1
|
|
1671
1671
|
|
|
1672
|
-
match_value_2 = (try_parse_1(scalar_value, FSharpRef(
|
|
1672
|
+
match_value_2 = (try_parse_1(scalar_value, FSharpRef(_arrow944, _arrow945)), out_arg_1)
|
|
1673
1673
|
if match_value_2[0]:
|
|
1674
1674
|
return match_value_2[1]
|
|
1675
1675
|
|
|
@@ -1681,17 +1681,17 @@ def Decode_decodeResourceScalar(element: YAMLElement) -> Any:
|
|
|
1681
1681
|
|
|
1682
1682
|
|
|
1683
1683
|
def Decode_optionalResourceField(get: IGetters, field_name: str) -> Any | None:
|
|
1684
|
-
def
|
|
1684
|
+
def _arrow946(element: YAMLElement, get: Any=get, field_name: Any=field_name) -> Any:
|
|
1685
1685
|
return Decode_decodeResourceScalar(element)
|
|
1686
1686
|
|
|
1687
|
-
def
|
|
1687
|
+
def _arrow947(__unit: None=None, get: Any=get, field_name: Any=field_name) -> YAMLElement | None:
|
|
1688
1688
|
object_arg: IOptionalGetter = get.Optional
|
|
1689
1689
|
def arg_1(x: YAMLElement) -> YAMLElement:
|
|
1690
1690
|
return x
|
|
1691
1691
|
|
|
1692
1692
|
return object_arg.Field(field_name, arg_1)
|
|
1693
1693
|
|
|
1694
|
-
return map_1(
|
|
1694
|
+
return map_1(_arrow946, _arrow947())
|
|
1695
1695
|
|
|
1696
1696
|
|
|
1697
1697
|
def Decode_resourceRequirementDecoder(get: IGetters) -> ResourceRequirementInstance:
|
|
@@ -1699,10 +1699,10 @@ def Decode_resourceRequirementDecoder(get: IGetters) -> ResourceRequirementInsta
|
|
|
1699
1699
|
|
|
1700
1700
|
|
|
1701
1701
|
def Decode_schemaDefRequirementTypeDecoder(value: YAMLElement) -> SchemaDefRequirementType:
|
|
1702
|
-
def
|
|
1702
|
+
def _arrow948(get: IGetters, value: Any=value) -> Any:
|
|
1703
1703
|
return get.Overflow.FieldList(empty())
|
|
1704
1704
|
|
|
1705
|
-
dict_1: Any = object(
|
|
1705
|
+
dict_1: Any = object(_arrow948, value)
|
|
1706
1706
|
if "name" in dict_1:
|
|
1707
1707
|
return SchemaDefRequirementType(Decode_decodeStringOrExpression(get_item_from_dict(dict_1, "name")), Decode_cwlTypeDecoder_0027(value))
|
|
1708
1708
|
|
|
@@ -1718,10 +1718,10 @@ def Decode_schemaDefRequirementTypeDecoder(value: YAMLElement) -> SchemaDefRequi
|
|
|
1718
1718
|
def Decode_schemaDefRequirementDecoder(get: IGetters) -> Array[SchemaDefRequirementType]:
|
|
1719
1719
|
object_arg: IRequiredGetter = get.Required
|
|
1720
1720
|
def arg_1(value: YAMLElement, get: Any=get) -> Array[SchemaDefRequirementType]:
|
|
1721
|
-
def
|
|
1721
|
+
def _arrow949(value_1: YAMLElement, value: Any=value) -> SchemaDefRequirementType:
|
|
1722
1722
|
return Decode_schemaDefRequirementTypeDecoder(value_1)
|
|
1723
1723
|
|
|
1724
|
-
return resizearray(
|
|
1724
|
+
return resizearray(_arrow949, value)
|
|
1725
1725
|
|
|
1726
1726
|
return object_arg.Field("types", arg_1)
|
|
1727
1727
|
|
|
@@ -1816,11 +1816,11 @@ def Decode_networkAccessRequirementDecoder(get: IGetters) -> Requirement:
|
|
|
1816
1816
|
|
|
1817
1817
|
|
|
1818
1818
|
def Decode_inplaceUpdateRequirementDecoder(get: IGetters) -> InplaceUpdateRequirementValue:
|
|
1819
|
-
def
|
|
1819
|
+
def _arrow950(__unit: None=None, get: Any=get) -> bool | None:
|
|
1820
1820
|
object_arg: IOptionalGetter = get.Optional
|
|
1821
1821
|
return object_arg.Field("inplaceUpdate", bool_1)
|
|
1822
1822
|
|
|
1823
|
-
return InplaceUpdateRequirementValue(default_arg(
|
|
1823
|
+
return InplaceUpdateRequirementValue(default_arg(_arrow950(), True))
|
|
1824
1824
|
|
|
1825
1825
|
|
|
1826
1826
|
def Decode_toolTimeLimitRequirementDecoder(get: IGetters) -> ToolTimeLimitValue:
|
|
@@ -1837,14 +1837,14 @@ def Decode_toolTimeLimitRequirementDecoder(get: IGetters) -> ToolTimeLimitValue:
|
|
|
1837
1837
|
else:
|
|
1838
1838
|
match_value: tuple[bool, int64]
|
|
1839
1839
|
out_arg: int64 = int64(0)
|
|
1840
|
-
def
|
|
1840
|
+
def _arrow951(__unit: None=None, get: Any=get) -> int64:
|
|
1841
1841
|
return out_arg
|
|
1842
1842
|
|
|
1843
|
-
def
|
|
1843
|
+
def _arrow952(v: int64, get: Any=get) -> None:
|
|
1844
1844
|
nonlocal out_arg
|
|
1845
1845
|
out_arg = v
|
|
1846
1846
|
|
|
1847
|
-
match_value = (try_parse(try_get_scalar_string, 7, False, 64, FSharpRef(
|
|
1847
|
+
match_value = (try_parse(try_get_scalar_string, 7, False, 64, FSharpRef(_arrow951, _arrow952)), out_arg)
|
|
1848
1848
|
if match_value[0]:
|
|
1849
1849
|
if match_value[1] >= int64(0):
|
|
1850
1850
|
return ToolTimeLimitValue(0, match_value[1])
|
|
@@ -1860,11 +1860,11 @@ def Decode_toolTimeLimitRequirementDecoder(get: IGetters) -> ToolTimeLimitValue:
|
|
|
1860
1860
|
|
|
1861
1861
|
|
|
1862
1862
|
def Decode_inlineJavascriptRequirementDecoder(get: IGetters) -> InlineJavascriptRequirementValue:
|
|
1863
|
-
def
|
|
1863
|
+
def _arrow953(__unit: None=None, get: Any=get) -> Array[str] | None:
|
|
1864
1864
|
object_arg: IOptionalGetter = get.Optional
|
|
1865
1865
|
return object_arg.Field("expressionLib", Decode_decodeStringArrayOrScalar)
|
|
1866
1866
|
|
|
1867
|
-
return InlineJavascriptRequirementValue(
|
|
1867
|
+
return InlineJavascriptRequirementValue(_arrow953())
|
|
1868
1868
|
|
|
1869
1869
|
|
|
1870
1870
|
def Decode_requirementFromTypeName(cls: str, get: IGetters) -> Requirement:
|
|
@@ -2018,28 +2018,28 @@ def Decode_requirementArrayDecoder(y_ele: YAMLElement) -> Array[Requirement]:
|
|
|
2018
2018
|
|
|
2019
2019
|
if pattern_matching_result == 0:
|
|
2020
2020
|
def decode_single_requirement_object(ele: YAMLElement, y_ele: Any=y_ele) -> Requirement:
|
|
2021
|
-
def
|
|
2022
|
-
def
|
|
2021
|
+
def _arrow955(get: IGetters, ele: Any=ele) -> Requirement:
|
|
2022
|
+
def _arrow954(__unit: None=None) -> str:
|
|
2023
2023
|
object_arg: IRequiredGetter = get.Required
|
|
2024
2024
|
return object_arg.Field("class", string)
|
|
2025
2025
|
|
|
2026
|
-
return Decode_requirementFromTypeName(
|
|
2026
|
+
return Decode_requirementFromTypeName(_arrow954(), get)
|
|
2027
2027
|
|
|
2028
|
-
return object(
|
|
2028
|
+
return object(_arrow955, ele)
|
|
2029
2029
|
|
|
2030
2030
|
return list(map(decode_single_requirement_object, items))
|
|
2031
2031
|
|
|
2032
2032
|
elif pattern_matching_result == 1:
|
|
2033
|
-
def
|
|
2033
|
+
def _arrow957(get_1: IGetters, y_ele: Any=y_ele) -> Array[Requirement]:
|
|
2034
2034
|
def mapping(kv: Any) -> Requirement:
|
|
2035
|
-
def
|
|
2035
|
+
def _arrow956(get_2: IGetters, kv: Any=kv) -> Requirement:
|
|
2036
2036
|
return Decode_requirementFromTypeName(kv[0], get_2)
|
|
2037
2037
|
|
|
2038
|
-
return object(
|
|
2038
|
+
return object(_arrow956, kv[1])
|
|
2039
2039
|
|
|
2040
2040
|
return list(map_2(mapping, get_1.Overflow.FieldList(empty())))
|
|
2041
2041
|
|
|
2042
|
-
return object(
|
|
2042
|
+
return object(_arrow957, y_ele)
|
|
2043
2043
|
|
|
2044
2044
|
elif pattern_matching_result == 2:
|
|
2045
2045
|
raise Exception(("Invalid CWL requirements syntax: " + str(other)) + "")
|
|
@@ -2048,23 +2048,23 @@ def Decode_requirementArrayDecoder(y_ele: YAMLElement) -> Array[Requirement]:
|
|
|
2048
2048
|
|
|
2049
2049
|
def Decode_tryDecodeKnownRequirementFromElement(element: YAMLElement) -> Requirement | None:
|
|
2050
2050
|
try:
|
|
2051
|
-
def
|
|
2052
|
-
def
|
|
2051
|
+
def _arrow960(get: IGetters) -> Requirement:
|
|
2052
|
+
def _arrow959(__unit: None=None) -> str:
|
|
2053
2053
|
object_arg: IRequiredGetter = get.Required
|
|
2054
2054
|
return object_arg.Field("class", string)
|
|
2055
2055
|
|
|
2056
|
-
return Decode_requirementFromTypeName(
|
|
2056
|
+
return Decode_requirementFromTypeName(_arrow959(), get)
|
|
2057
2057
|
|
|
2058
|
-
return object(
|
|
2058
|
+
return object(_arrow960, element)
|
|
2059
2059
|
|
|
2060
2060
|
except Exception as ex:
|
|
2061
2061
|
hint_class: str | None
|
|
2062
2062
|
try:
|
|
2063
|
-
def
|
|
2063
|
+
def _arrow958(get_1: IGetters) -> str | None:
|
|
2064
2064
|
object_arg_1: IOptionalGetter = get_1.Optional
|
|
2065
2065
|
return object_arg_1.Field("class", string)
|
|
2066
2066
|
|
|
2067
|
-
hint_class = object(
|
|
2067
|
+
hint_class = object(_arrow958, element)
|
|
2068
2068
|
|
|
2069
2069
|
except Exception as match_value:
|
|
2070
2070
|
hint_class = None
|
|
@@ -2082,19 +2082,19 @@ def Decode_tryDecodeKnownRequirementFromElement(element: YAMLElement) -> Require
|
|
|
2082
2082
|
def Decode_decodeHintElement(element: YAMLElement) -> HintEntry:
|
|
2083
2083
|
match_value: Requirement | None = Decode_tryDecodeKnownRequirementFromElement(element)
|
|
2084
2084
|
if match_value is None:
|
|
2085
|
-
def
|
|
2085
|
+
def _arrow962(__unit: None=None, element: Any=element) -> str | None:
|
|
2086
2086
|
try:
|
|
2087
|
-
def
|
|
2087
|
+
def _arrow961(get: IGetters) -> str | None:
|
|
2088
2088
|
object_arg: IOptionalGetter = get.Optional
|
|
2089
2089
|
return object_arg.Field("class", string)
|
|
2090
2090
|
|
|
2091
|
-
return object(
|
|
2091
|
+
return object(_arrow961, element)
|
|
2092
2092
|
|
|
2093
2093
|
except Exception as match_value_1:
|
|
2094
2094
|
return None
|
|
2095
2095
|
|
|
2096
2096
|
|
|
2097
|
-
return HintEntry(1, HintUnknownValue(
|
|
2097
|
+
return HintEntry(1, HintUnknownValue(_arrow962(), element))
|
|
2098
2098
|
|
|
2099
2099
|
else:
|
|
2100
2100
|
return HintEntry(0, match_value)
|
|
@@ -2131,15 +2131,15 @@ def Decode_hintArrayDecoder(y_ele: YAMLElement) -> Array[HintEntry]:
|
|
|
2131
2131
|
other_1 = y_ele
|
|
2132
2132
|
|
|
2133
2133
|
if pattern_matching_result == 0:
|
|
2134
|
-
def
|
|
2134
|
+
def _arrow963(element: YAMLElement, y_ele: Any=y_ele) -> HintEntry:
|
|
2135
2135
|
return Decode_decodeHintElement(element)
|
|
2136
2136
|
|
|
2137
|
-
return list(map(
|
|
2137
|
+
return list(map(_arrow963, items))
|
|
2138
2138
|
|
|
2139
2139
|
elif pattern_matching_result == 1:
|
|
2140
|
-
def
|
|
2140
|
+
def _arrow966(get: IGetters, y_ele: Any=y_ele) -> Array[HintEntry]:
|
|
2141
2141
|
def mapping(kv: Any) -> HintEntry:
|
|
2142
|
-
def
|
|
2142
|
+
def _arrow965(__unit: None=None, kv: Any=kv) -> YAMLElement:
|
|
2143
2143
|
match_value: YAMLElement = kv[1]
|
|
2144
2144
|
if match_value.tag == 3:
|
|
2145
2145
|
mappings: FSharpList[YAMLElement] = match_value.fields[0]
|
|
@@ -2169,18 +2169,18 @@ def Decode_hintArrayDecoder(y_ele: YAMLElement) -> Array[HintEntry]:
|
|
|
2169
2169
|
return YAMLElement(3, of_array([YAMLElement(0, YAMLContent_create_Z1C3A29C9("class"), YAMLElement(3, singleton_1(YAMLElement(1, YAMLContent_create_Z1C3A29C9(kv[0]))))), YAMLElement(0, YAMLContent_create_Z1C3A29C9("value"), match_value)]))
|
|
2170
2170
|
|
|
2171
2171
|
|
|
2172
|
-
return Decode_decodeHintElement(
|
|
2172
|
+
return Decode_decodeHintElement(_arrow965())
|
|
2173
2173
|
|
|
2174
2174
|
return list(map_2(mapping, get.Overflow.FieldList(empty())))
|
|
2175
2175
|
|
|
2176
|
-
return object(
|
|
2176
|
+
return object(_arrow966, y_ele)
|
|
2177
2177
|
|
|
2178
2178
|
elif pattern_matching_result == 2:
|
|
2179
2179
|
raise Exception(("Invalid CWL hints syntax: " + str(other_1)) + "")
|
|
2180
2180
|
|
|
2181
2181
|
|
|
2182
2182
|
|
|
2183
|
-
def
|
|
2183
|
+
def _arrow967(value: YAMLElement) -> Array[Requirement] | None:
|
|
2184
2184
|
def getter(get: IGetters) -> Array[Requirement] | None:
|
|
2185
2185
|
object_arg: IOptionalGetter = get.Optional
|
|
2186
2186
|
def arg_1(y_ele: YAMLElement, get: Any=get) -> Array[Requirement]:
|
|
@@ -2191,9 +2191,9 @@ def _arrow969(value: YAMLElement) -> Array[Requirement] | None:
|
|
|
2191
2191
|
return object(getter, value)
|
|
2192
2192
|
|
|
2193
2193
|
|
|
2194
|
-
Decode_requirementsDecoder: Callable[[YAMLElement], Array[Requirement] | None] =
|
|
2194
|
+
Decode_requirementsDecoder: Callable[[YAMLElement], Array[Requirement] | None] = _arrow967
|
|
2195
2195
|
|
|
2196
|
-
def
|
|
2196
|
+
def _arrow968(value: YAMLElement) -> Array[HintEntry] | None:
|
|
2197
2197
|
def getter(get: IGetters) -> Array[HintEntry] | None:
|
|
2198
2198
|
object_arg: IOptionalGetter = get.Optional
|
|
2199
2199
|
def arg_1(y_ele: YAMLElement, get: Any=get) -> Array[HintEntry]:
|
|
@@ -2204,30 +2204,30 @@ def _arrow970(value: YAMLElement) -> Array[HintEntry] | None:
|
|
|
2204
2204
|
return object(getter, value)
|
|
2205
2205
|
|
|
2206
2206
|
|
|
2207
|
-
Decode_hintsDecoder: Callable[[YAMLElement], Array[HintEntry] | None] =
|
|
2207
|
+
Decode_hintsDecoder: Callable[[YAMLElement], Array[HintEntry] | None] = _arrow968
|
|
2208
2208
|
|
|
2209
|
-
def
|
|
2209
|
+
def _arrow974(value_5: YAMLElement) -> InputBinding | None:
|
|
2210
2210
|
def getter_1(get: IGetters) -> InputBinding | None:
|
|
2211
2211
|
object_arg: IOptionalGetter = get.Optional
|
|
2212
2212
|
def arg_1(value_4: YAMLElement, get: Any=get) -> InputBinding:
|
|
2213
2213
|
def getter(get_0027: IGetters, value_4: Any=value_4) -> InputBinding:
|
|
2214
|
-
def
|
|
2214
|
+
def _arrow969(__unit: None=None, get_0027: Any=get_0027) -> str | None:
|
|
2215
2215
|
object_arg_1: IOptionalGetter = get_0027.Optional
|
|
2216
2216
|
return object_arg_1.Field("prefix", string)
|
|
2217
2217
|
|
|
2218
|
-
def
|
|
2218
|
+
def _arrow970(__unit: None=None, get_0027: Any=get_0027) -> int | None:
|
|
2219
2219
|
object_arg_2: IOptionalGetter = get_0027.Optional
|
|
2220
2220
|
return object_arg_2.Field("position", int_1)
|
|
2221
2221
|
|
|
2222
|
-
def
|
|
2222
|
+
def _arrow971(__unit: None=None, get_0027: Any=get_0027) -> str | None:
|
|
2223
2223
|
object_arg_3: IOptionalGetter = get_0027.Optional
|
|
2224
2224
|
return object_arg_3.Field("itemSeparator", string)
|
|
2225
2225
|
|
|
2226
|
-
def
|
|
2226
|
+
def _arrow973(__unit: None=None, get_0027: Any=get_0027) -> bool | None:
|
|
2227
2227
|
object_arg_4: IOptionalGetter = get_0027.Optional
|
|
2228
2228
|
return object_arg_4.Field("separate", bool_1)
|
|
2229
2229
|
|
|
2230
|
-
return InputBinding(
|
|
2230
|
+
return InputBinding(_arrow969(), _arrow970(), _arrow971(), _arrow973())
|
|
2231
2231
|
|
|
2232
2232
|
return object(getter, value_4)
|
|
2233
2233
|
|
|
@@ -2236,7 +2236,7 @@ def _arrow975(value_5: YAMLElement) -> InputBinding | None:
|
|
|
2236
2236
|
return object(getter_1, value_5)
|
|
2237
2237
|
|
|
2238
2238
|
|
|
2239
|
-
Decode_inputBindingDecoder: Callable[[YAMLElement], InputBinding | None] =
|
|
2239
|
+
Decode_inputBindingDecoder: Callable[[YAMLElement], InputBinding | None] = _arrow974
|
|
2240
2240
|
|
|
2241
2241
|
def _arrow982(value_1: YAMLElement) -> Array[CWLInput]:
|
|
2242
2242
|
def getter(get: IGetters) -> Array[CWLInput]:
|