arctrl 3.0.1__tar.gz → 3.0.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {arctrl-3.0.1 → arctrl-3.0.2}/PKG-INFO +1 -1
- {arctrl-3.0.1 → arctrl-3.0.2}/pyproject.toml +1 -1
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/decode.py +97 -97
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/encode.py +50 -50
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/hash_helpers.py +3 -3
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/outputs.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/parameter_reference.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/requirements.py +20 -20
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/workflow_steps.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/arc_investigation.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/arc_run.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/contract.py +8 -8
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/datamap.py +26 -26
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/license.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/validation_packages_config.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ContractIO/contract_io.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/person.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/process.py +62 -62
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/sem_ver.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/component.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/factor_value.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/material_attribute.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/protocol_parameter.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/arc_table.py +10 -10
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/arc_tables.py +12 -12
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/composite_cell.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/composite_column.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/composite_header.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/arc_types.py +20 -20
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/comment.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/comment_list.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/conversion.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/data_file.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/ontology_annotation.py +24 -24
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/person.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/publication.py +5 -5
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/value.py +10 -10
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/file_system.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Datamap/data_context.py +24 -24
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Datamap/datamap.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/factor.py +19 -19
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/factor_value.py +7 -7
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/process.py +70 -70
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/process_input.py +10 -10
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/sample.py +18 -18
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Table/arc_table.py +85 -85
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Table/cell_table.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Table/oatable.py +10 -10
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Table/templates.py +59 -59
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/context/rocrate/isa_material_attribute_value_context.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/context/rocrate/isa_material_context.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_context.py +13 -13
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +12 -12
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/decode.py +12 -12
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/encode.py +16 -16
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/investigation.py +76 -76
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/person.py +37 -37
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/publication.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/run.py +7 -7
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/study.py +23 -23
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/JsonIO/Table/composite_cell.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/JsonIO/Table/compression.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ROCrate/ISAProfile/data.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ROCrate/ISAProfile/property_value.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ROCrate/ISAProfile/sample.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ROCrate/LDTypes/dataset.py +9 -9
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Spreadsheet/Metadata/contacts.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Spreadsheet/Metadata/conversions.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_annotation.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WebRequest/web_request_py.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WorkflowGraph/adapters.py +16 -16
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WorkflowGraph/builder.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WorkflowGraph/graph_types.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WorkflowGraph/reference_parsing.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WorkflowGraph/visualization_siren.py +26 -26
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/WorkflowGraph/workflow_graph.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Yaml/validation_package.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Yaml/validation_packages_config.py +3 -3
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +19 -19
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/types.py +20 -20
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/cell.py +12 -12
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/column.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/row.py +6 -6
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/table.py +9 -9
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +42 -42
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_column.py +16 -16
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_row.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +14 -14
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +24 -24
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/siren/config.py +38 -38
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/siren/formatting.py +80 -80
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/thoth_json_core/decode.py +56 -56
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/thoth_json_python/decode.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/thoth_json_python/encode.py +2 -2
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/yamlicious/decode.py +40 -40
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/fable_modules/yamlicious/reader.py +64 -64
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/json.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/rocrate_io.py +7 -3
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/template_web.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/yaml.py +4 -4
- {arctrl-3.0.1 → arctrl-3.0.2}/LICENSE +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/README.md +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/cwl.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/cwlprocessing_unit.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/cwltypes.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/expression_tool_description.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/inputs.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/operation_description.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/tool_description.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/CWL/workflow_description.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/arc.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/arc_assay.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/arc_study.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/arc_workflow.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Contract/git.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ContractIO/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/ContractIO/file_system_helper.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/assay.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/basic.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/column_index.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/datamap.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/date_time.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/investigation.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/run.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/scholarly_article.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/study.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/table.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Conversion/workflow.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/collections_.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/date_time.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/hash_codes.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/identifier.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/orcid.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/printer.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/regex.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Helper/url.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/column_index.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/factor.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/material.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/material_attribute_value.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/material_type.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/process.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/process_input.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/process_output.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/process_parameter_value.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/process_sequence.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/protocol.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/sample.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Process/source.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/Table/arc_table_aux.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/data.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/data_context.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/datamap.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/identifier_setters.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/iproperty_value.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/ontology_source_reference.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/template.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/templates.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Core/uri.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/commit.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/default_gitattributes.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/default_gitignore.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/default_license.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/file_system_tree.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/FileSystem/path.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Datamap/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/__init__.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/assay_materials.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/component.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/material.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/material_attribute.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/material_attribute_value.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/material_type.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/process_output.py +0 -0
- {arctrl-3.0.1 → arctrl-3.0.2}/src/ARCtrl/py/Json/Process/process_parameter_value.py +0 -0
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output: CWLOutput = CWLOutput(key, (((Decode_cwlTypeStringMatcher(head(value.fields[0]).fields[0].Value, get)[0] if is_empty(tail(value.fields[0])) else Decode_cwlTypeDecoder(value)[0]) if (head(value.fields[0]).tag == 1) else Decode_cwlTypeDecoder(value)[0]) if (not is_empty(value.fields[0])) else Decode_cwlTypeDecoder(value)[0]) if (value.tag == 3) else Decode_cwlTypeDecoder(value)[0])
|
|
1112
|
-
def
|
|
1112
|
+
def _expr904():
|
|
1113
1113
|
set_optional_property("outputBinding", output_binding, output)
|
|
1114
1114
|
return empty_1()
|
|
1115
1115
|
|
|
1116
|
-
def
|
|
1117
|
-
def
|
|
1116
|
+
def _arrow907(__unit: None=None) -> IEnumerable_1[CWLOutput]:
|
|
1117
|
+
def _arrow905(__unit: None=None) -> IEnumerable_1[CWLOutput]:
|
|
1118
1118
|
match_value: Array[str] | None = output_source_values
|
|
1119
1119
|
(pattern_matching_result, values_2, values_3) = (None, None, None)
|
|
1120
1120
|
if match_value is not None:
|
|
@@ -1145,23 +1145,23 @@ def _arrow907(value_1: YAMLElement) -> Array[CWLOutput]:
|
|
|
1145
1145
|
return empty_1()
|
|
1146
1146
|
|
|
1147
1147
|
|
|
1148
|
-
def
|
|
1148
|
+
def _arrow906(__unit: None=None) -> IEnumerable_1[CWLOutput]:
|
|
1149
1149
|
return singleton(output)
|
|
1150
1150
|
|
|
1151
|
-
return append(
|
|
1151
|
+
return append(_arrow905(), delay(_arrow906))
|
|
1152
1152
|
|
|
1153
|
-
return append(
|
|
1153
|
+
return append(_expr904() if (output_binding is not None) else empty_1(), delay(_arrow907))
|
|
1154
1154
|
|
|
1155
|
-
return collect(
|
|
1155
|
+
return collect(_arrow908, dict_1.keys())
|
|
1156
1156
|
|
|
1157
|
-
return list(to_array(delay(
|
|
1157
|
+
return list(to_array(delay(_arrow909)))
|
|
1158
1158
|
|
|
1159
1159
|
return object(getter, value_1)
|
|
1160
1160
|
|
|
1161
1161
|
|
|
1162
|
-
Decode_outputArrayDecoder: Callable[[YAMLElement], Array[CWLOutput]] =
|
|
1162
|
+
Decode_outputArrayDecoder: Callable[[YAMLElement], Array[CWLOutput]] = _arrow910
|
|
1163
1163
|
|
|
1164
|
-
def
|
|
1164
|
+
def _arrow911(value: YAMLElement) -> Array[CWLOutput]:
|
|
1165
1165
|
def getter(get: IGetters) -> Array[CWLOutput]:
|
|
1166
1166
|
object_arg: IRequiredGetter = get.Required
|
|
1167
1167
|
return object_arg.Field("outputs", Decode_outputArrayDecoder)
|
|
@@ -1169,41 +1169,41 @@ def _arrow908(value: YAMLElement) -> Array[CWLOutput]:
|
|
|
1169
1169
|
return object(getter, value)
|
|
1170
1170
|
|
|
1171
1171
|
|
|
1172
|
-
Decode_outputsDecoder: Callable[[YAMLElement], Array[CWLOutput]] =
|
|
1172
|
+
Decode_outputsDecoder: Callable[[YAMLElement], Array[CWLOutput]] = _arrow911
|
|
1173
1173
|
|
|
1174
1174
|
def Decode_dockerRequirementDecoder(get: IGetters) -> DockerRequirement:
|
|
1175
|
-
def
|
|
1175
|
+
def _arrow912(y_ele: YAMLElement, get: Any=get) -> SchemaSaladString:
|
|
1176
1176
|
return Decode_decodeSchemaSaladString(y_ele)
|
|
1177
1177
|
|
|
1178
|
-
def
|
|
1178
|
+
def _arrow913(__unit: None=None, get: Any=get) -> YAMLElement | None:
|
|
1179
1179
|
object_arg: IOptionalGetter = get.Optional
|
|
1180
1180
|
def arg_1(x: YAMLElement) -> YAMLElement:
|
|
1181
1181
|
return x
|
|
1182
1182
|
|
|
1183
1183
|
return object_arg.Field("dockerFile", arg_1)
|
|
1184
1184
|
|
|
1185
|
-
docker_file: SchemaSaladString | None = map_1(
|
|
1186
|
-
def
|
|
1185
|
+
docker_file: SchemaSaladString | None = map_1(_arrow912, _arrow913())
|
|
1186
|
+
def _arrow914(__unit: None=None, get: Any=get) -> str | None:
|
|
1187
1187
|
object_arg_1: IOptionalGetter = get.Optional
|
|
1188
1188
|
return object_arg_1.Field("dockerPull", string)
|
|
1189
1189
|
|
|
1190
|
-
def
|
|
1190
|
+
def _arrow915(__unit: None=None, get: Any=get) -> str | None:
|
|
1191
1191
|
object_arg_2: IOptionalGetter = get.Optional
|
|
1192
1192
|
return object_arg_2.Field("dockerImageId", string)
|
|
1193
1193
|
|
|
1194
|
-
def
|
|
1194
|
+
def _arrow916(__unit: None=None, get: Any=get) -> str | None:
|
|
1195
1195
|
object_arg_3: IOptionalGetter = get.Optional
|
|
1196
1196
|
return object_arg_3.Field("dockerLoad", string)
|
|
1197
1197
|
|
|
1198
|
-
def
|
|
1198
|
+
def _arrow917(__unit: None=None, get: Any=get) -> str | None:
|
|
1199
1199
|
object_arg_4: IOptionalGetter = get.Optional
|
|
1200
1200
|
return object_arg_4.Field("dockerImport", string)
|
|
1201
1201
|
|
|
1202
|
-
def
|
|
1202
|
+
def _arrow918(__unit: None=None, get: Any=get) -> str | None:
|
|
1203
1203
|
object_arg_5: IOptionalGetter = get.Optional
|
|
1204
1204
|
return object_arg_5.Field("dockerOutputDirectory", string)
|
|
1205
1205
|
|
|
1206
|
-
return DockerRequirement_create_Z14898805(
|
|
1206
|
+
return DockerRequirement_create_Z14898805(_arrow914(), None, docker_file, _arrow915(), _arrow916(), _arrow917(), _arrow918())
|
|
1207
1207
|
|
|
1208
1208
|
|
|
1209
1209
|
def Decode_envVarRequirementDecoder(get: IGetters) -> Array[EnvironmentDef]:
|
|
@@ -1261,26 +1261,26 @@ def Decode_envVarRequirementDecoder(get: IGetters) -> Array[EnvironmentDef]:
|
|
|
1261
1261
|
env_def_element = other
|
|
1262
1262
|
|
|
1263
1263
|
if env_def_element.tag == 2:
|
|
1264
|
-
def
|
|
1264
|
+
def _arrow921(value_3: YAMLElement, get: Any=get) -> EnvironmentDef:
|
|
1265
1265
|
def getter(get2: IGetters) -> EnvironmentDef:
|
|
1266
|
-
def
|
|
1266
|
+
def _arrow919(__unit: None=None, get2: Any=get2) -> str:
|
|
1267
1267
|
object_arg_1: IRequiredGetter = get2.Required
|
|
1268
1268
|
return object_arg_1.Field("envName", string)
|
|
1269
1269
|
|
|
1270
|
-
def
|
|
1270
|
+
def _arrow920(__unit: None=None, get2: Any=get2) -> str:
|
|
1271
1271
|
object_arg_2: IRequiredGetter = get2.Required
|
|
1272
1272
|
return object_arg_2.Field("envValue", string)
|
|
1273
1273
|
|
|
1274
|
-
return EnvironmentDef(
|
|
1274
|
+
return EnvironmentDef(_arrow919(), _arrow920())
|
|
1275
1275
|
|
|
1276
1276
|
return object(getter, value_3)
|
|
1277
1277
|
|
|
1278
|
-
return resizearray(
|
|
1278
|
+
return resizearray(_arrow921, env_def_element)
|
|
1279
1279
|
|
|
1280
1280
|
elif env_def_element.tag == 3:
|
|
1281
1281
|
def chooser(_arg_2: YAMLElement, get: Any=get) -> EnvironmentDef | None:
|
|
1282
1282
|
if _arg_2.tag == 0:
|
|
1283
|
-
def
|
|
1283
|
+
def _arrow922(__unit: None=None, _arg_2: Any=_arg_2) -> str:
|
|
1284
1284
|
_arg_1: YAMLElement = _arg_2.fields[1]
|
|
1285
1285
|
(pattern_matching_result_1, value, other_1) = (None, None, None)
|
|
1286
1286
|
if _arg_1.tag == 1:
|
|
@@ -1320,7 +1320,7 @@ def Decode_envVarRequirementDecoder(get: IGetters) -> Array[EnvironmentDef]:
|
|
|
1320
1320
|
return Decode_decodeStringOrExpression(other_1)
|
|
1321
1321
|
|
|
1322
1322
|
|
|
1323
|
-
return EnvironmentDef(_arg_2.fields[0].Value,
|
|
1323
|
+
return EnvironmentDef(_arg_2.fields[0].Value, _arrow922())
|
|
1324
1324
|
|
|
1325
1325
|
else:
|
|
1326
1326
|
return None
|
|
@@ -1382,57 +1382,57 @@ def Decode_softwareRequirementDecoder(get: IGetters) -> Array[SoftwarePackage]:
|
|
|
1382
1382
|
return other
|
|
1383
1383
|
|
|
1384
1384
|
|
|
1385
|
-
def
|
|
1385
|
+
def _arrow923(__unit: None=None, get: Any=get) -> YAMLElement:
|
|
1386
1386
|
object_arg: IRequiredGetter = get.Required
|
|
1387
1387
|
def arg_1(x: YAMLElement) -> YAMLElement:
|
|
1388
1388
|
return x
|
|
1389
1389
|
|
|
1390
1390
|
return object_arg.Field("packages", arg_1)
|
|
1391
1391
|
|
|
1392
|
-
packages_element: YAMLElement = normalize_collection_element(
|
|
1392
|
+
packages_element: YAMLElement = normalize_collection_element(_arrow923())
|
|
1393
1393
|
def decode_specs_array(element: YAMLElement, get: Any=get) -> Array[str]:
|
|
1394
|
-
def
|
|
1394
|
+
def _arrow924(y_ele: YAMLElement, element: Any=element) -> str:
|
|
1395
1395
|
return Decode_decodeStringOrExpression(y_ele)
|
|
1396
1396
|
|
|
1397
|
-
return resizearray(
|
|
1397
|
+
return resizearray(_arrow924, normalize_collection_element(element))
|
|
1398
1398
|
|
|
1399
1399
|
if packages_element.tag == 2:
|
|
1400
|
-
def
|
|
1400
|
+
def _arrow930(value_5: YAMLElement, get: Any=get) -> SoftwarePackage:
|
|
1401
1401
|
def getter(get2: IGetters) -> SoftwarePackage:
|
|
1402
|
-
def
|
|
1402
|
+
def _arrow925(__unit: None=None, get2: Any=get2) -> str:
|
|
1403
1403
|
object_arg_1: IRequiredGetter = get2.Required
|
|
1404
1404
|
return object_arg_1.Field("package", string)
|
|
1405
1405
|
|
|
1406
|
-
def
|
|
1406
|
+
def _arrow927(__unit: None=None, get2: Any=get2) -> Array[str] | None:
|
|
1407
1407
|
object_arg_2: IOptionalGetter = get2.Optional
|
|
1408
1408
|
def arg_5(value_1: YAMLElement) -> Array[str]:
|
|
1409
|
-
def
|
|
1409
|
+
def _arrow926(value_2: YAMLElement, value_1: Any=value_1) -> str:
|
|
1410
1410
|
return string(value_2)
|
|
1411
1411
|
|
|
1412
|
-
return resizearray(
|
|
1412
|
+
return resizearray(_arrow926, value_1)
|
|
1413
1413
|
|
|
1414
1414
|
return object_arg_2.Field("version", arg_5)
|
|
1415
1415
|
|
|
1416
|
-
def
|
|
1416
|
+
def _arrow929(__unit: None=None, get2: Any=get2) -> Array[str] | None:
|
|
1417
1417
|
object_arg_3: IOptionalGetter = get2.Optional
|
|
1418
1418
|
def arg_7(value_3: YAMLElement) -> Array[str]:
|
|
1419
|
-
def
|
|
1419
|
+
def _arrow928(value_4: YAMLElement, value_3: Any=value_3) -> str:
|
|
1420
1420
|
return string(value_4)
|
|
1421
1421
|
|
|
1422
|
-
return resizearray(
|
|
1422
|
+
return resizearray(_arrow928, value_3)
|
|
1423
1423
|
|
|
1424
1424
|
return object_arg_3.Field("specs", arg_7)
|
|
1425
1425
|
|
|
1426
|
-
return SoftwarePackage(
|
|
1426
|
+
return SoftwarePackage(_arrow925(), _arrow927(), _arrow929())
|
|
1427
1427
|
|
|
1428
1428
|
return object(getter, value_5)
|
|
1429
1429
|
|
|
1430
|
-
return resizearray(
|
|
1430
|
+
return resizearray(_arrow930, packages_element)
|
|
1431
1431
|
|
|
1432
1432
|
elif packages_element.tag == 3:
|
|
1433
1433
|
def chooser_2(_arg_3: YAMLElement, get: Any=get) -> SoftwarePackage | None:
|
|
1434
1434
|
if _arg_3.tag == 0:
|
|
1435
|
-
def
|
|
1435
|
+
def _arrow931(__unit: None=None, _arg_3: Any=_arg_3) -> SoftwarePackage:
|
|
1436
1436
|
package_name: str = _arg_3.fields[0].Value
|
|
1437
1437
|
package_value: YAMLElement = _arg_3.fields[1]
|
|
1438
1438
|
normalized_package_value: YAMLElement = normalize_collection_element(package_value)
|
|
@@ -1482,7 +1482,7 @@ def Decode_softwareRequirementDecoder(get: IGetters) -> Array[SoftwarePackage]:
|
|
|
1482
1482
|
|
|
1483
1483
|
return (SoftwarePackage(package_name, None, None) if is_empty(normalized_package_value.fields[0]) else SoftwarePackage(package_name, try_pick(chooser, normalized_package_value.fields[0]), try_pick(chooser_1, normalized_package_value.fields[0]))) if (normalized_package_value.tag == 3) else (SoftwarePackage(package_name, None, decode_specs_array(normalized_package_value)) if (normalized_package_value.tag == 2) else SoftwarePackage(package_name, None, [Decode_decodeStringOrExpression(package_value)]))
|
|
1484
1484
|
|
|
1485
|
-
return
|
|
1485
|
+
return _arrow931()
|
|
1486
1486
|
|
|
1487
1487
|
else:
|
|
1488
1488
|
return None
|
|
@@ -1528,10 +1528,10 @@ def Decode_initialWorkDirRequirementDecoder(get: IGetters) -> Array[InitialWorkD
|
|
|
1528
1528
|
pattern_matching_result = 1
|
|
1529
1529
|
|
|
1530
1530
|
if pattern_matching_result == 0:
|
|
1531
|
-
def
|
|
1531
|
+
def _arrow932(value: YAMLElement, get: Any=get) -> InitialWorkDirEntry:
|
|
1532
1532
|
return Decode_initialWorkDirEntryDecoder(value)
|
|
1533
1533
|
|
|
1534
|
-
return resizearray(
|
|
1534
|
+
return resizearray(_arrow932, listing_element)
|
|
1535
1535
|
|
|
1536
1536
|
elif pattern_matching_result == 1:
|
|
1537
1537
|
return [Decode_initialWorkDirEntryDecoder(listing_element)]
|
|
@@ -1539,12 +1539,12 @@ def Decode_initialWorkDirRequirementDecoder(get: IGetters) -> Array[InitialWorkD
|
|
|
1539
1539
|
|
|
1540
1540
|
|
|
1541
1541
|
def Decode_loadListingRequirementDecoder(get: IGetters) -> LoadListingRequirementValue:
|
|
1542
|
-
def
|
|
1542
|
+
def _arrow933(__unit: None=None, get: Any=get) -> str | None:
|
|
1543
1543
|
object_arg: IOptionalGetter = get.Optional
|
|
1544
1544
|
return object_arg.Field("loadListing", string)
|
|
1545
1545
|
|
|
1546
|
-
load_listing_value: str = default_arg(
|
|
1547
|
-
def
|
|
1546
|
+
load_listing_value: str = default_arg(_arrow933(), "no_listing")
|
|
1547
|
+
def _arrow934(__unit: None=None, get: Any=get) -> LoadListingEnum:
|
|
1548
1548
|
match_value: LoadListingEnum | None = LoadListingEnum_tryParse_Z721C83C5(load_listing_value)
|
|
1549
1549
|
if match_value is None:
|
|
1550
1550
|
raise Exception(("Invalid loadListing value \'" + load_listing_value) + "\'. Expected one of: no_listing, shallow_listing, deep_listing.")
|
|
@@ -1553,7 +1553,7 @@ def Decode_loadListingRequirementDecoder(get: IGetters) -> LoadListingRequiremen
|
|
|
1553
1553
|
return match_value
|
|
1554
1554
|
|
|
1555
1555
|
|
|
1556
|
-
return LoadListingRequirementValue(
|
|
1556
|
+
return LoadListingRequirementValue(_arrow934())
|
|
1557
1557
|
|
|
1558
1558
|
|
|
1559
1559
|
def Decode_decodeResourceScalar(element: YAMLElement) -> Any:
|
|
@@ -1599,28 +1599,28 @@ def Decode_decodeResourceScalar(element: YAMLElement) -> Any:
|
|
|
1599
1599
|
scalar_value: str = match_value
|
|
1600
1600
|
match_value_1: tuple[bool, int64]
|
|
1601
1601
|
out_arg: int64 = int64(0)
|
|
1602
|
-
def
|
|
1602
|
+
def _arrow935(__unit: None=None, element: Any=element) -> int64:
|
|
1603
1603
|
return out_arg
|
|
1604
1604
|
|
|
1605
|
-
def
|
|
1605
|
+
def _arrow936(v: int64, element: Any=element) -> None:
|
|
1606
1606
|
nonlocal out_arg
|
|
1607
1607
|
out_arg = v
|
|
1608
1608
|
|
|
1609
|
-
match_value_1 = (try_parse(scalar_value, 7, False, 64, FSharpRef(
|
|
1609
|
+
match_value_1 = (try_parse(scalar_value, 7, False, 64, FSharpRef(_arrow935, _arrow936)), out_arg)
|
|
1610
1610
|
if match_value_1[0]:
|
|
1611
1611
|
return match_value_1[1]
|
|
1612
1612
|
|
|
1613
1613
|
else:
|
|
1614
1614
|
match_value_2: tuple[bool, float]
|
|
1615
1615
|
out_arg_1: float = 0.0
|
|
1616
|
-
def
|
|
1616
|
+
def _arrow937(__unit: None=None, element: Any=element) -> float:
|
|
1617
1617
|
return out_arg_1
|
|
1618
1618
|
|
|
1619
|
-
def
|
|
1619
|
+
def _arrow938(v_1: float, element: Any=element) -> None:
|
|
1620
1620
|
nonlocal out_arg_1
|
|
1621
1621
|
out_arg_1 = v_1
|
|
1622
1622
|
|
|
1623
|
-
match_value_2 = (try_parse_1(scalar_value, FSharpRef(
|
|
1623
|
+
match_value_2 = (try_parse_1(scalar_value, FSharpRef(_arrow937, _arrow938)), out_arg_1)
|
|
1624
1624
|
if match_value_2[0]:
|
|
1625
1625
|
return match_value_2[1]
|
|
1626
1626
|
|
|
@@ -2877,7 +2877,7 @@ def _arrow1001(value_2: YAMLElement) -> Array[StepOutput]:
|
|
|
2877
2877
|
|
|
2878
2878
|
Decode_outputStepsDecoder: Callable[[YAMLElement], Array[StepOutput]] = _arrow1001
|
|
2879
2879
|
|
|
2880
|
-
def
|
|
2880
|
+
def _arrow1003(value_1: YAMLElement) -> str | None:
|
|
2881
2881
|
def getter(get: IGetters) -> str | None:
|
|
2882
2882
|
object_arg: IOptionalGetter = get.Optional
|
|
2883
2883
|
def arg_1(value: YAMLElement, get: Any=get) -> str:
|
|
@@ -2888,9 +2888,9 @@ def _arrow1002(value_1: YAMLElement) -> str | None:
|
|
|
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2888
|
return object(getter, value_1)
|
|
2889
2889
|
|
|
2890
2890
|
|
|
2891
|
-
Decode_docDecoder: Callable[[YAMLElement], str | None] =
|
|
2891
|
+
Decode_docDecoder: Callable[[YAMLElement], str | None] = _arrow1003
|
|
2892
2892
|
|
|
2893
|
-
def
|
|
2893
|
+
def _arrow1004(value_1: YAMLElement) -> str | None:
|
|
2894
2894
|
def getter(get: IGetters) -> str | None:
|
|
2895
2895
|
object_arg: IOptionalGetter = get.Optional
|
|
2896
2896
|
def arg_1(value: YAMLElement, get: Any=get) -> str:
|
|
@@ -2901,26 +2901,26 @@ def _arrow1003(value_1: YAMLElement) -> str | None:
|
|
|
2901
2901
|
return object(getter, value_1)
|
|
2902
2902
|
|
|
2903
2903
|
|
|
2904
|
-
Decode_labelDecoder: Callable[[YAMLElement], str | None] =
|
|
2904
|
+
Decode_labelDecoder: Callable[[YAMLElement], str | None] = _arrow1004
|
|
2905
2905
|
|
|
2906
|
-
def
|
|
2906
|
+
def _arrow1007(value_1: YAMLElement) -> Array[str] | None:
|
|
2907
2907
|
def getter(get: IGetters) -> Array[str] | None:
|
|
2908
|
-
def
|
|
2908
|
+
def _arrow1005(value: YAMLElement, get: Any=get) -> Array[str] | None:
|
|
2909
2909
|
return Decode_stringOrStringArrayDecoder(value)
|
|
2910
2910
|
|
|
2911
|
-
def
|
|
2911
|
+
def _arrow1006(__unit: None=None, get: Any=get) -> YAMLElement | None:
|
|
2912
2912
|
object_arg: IOptionalGetter = get.Optional
|
|
2913
2913
|
def arg_1(x: YAMLElement) -> YAMLElement:
|
|
2914
2914
|
return x
|
|
2915
2915
|
|
|
2916
2916
|
return object_arg.Field("intent", arg_1)
|
|
2917
2917
|
|
|
2918
|
-
return bind(
|
|
2918
|
+
return bind(_arrow1005, _arrow1006())
|
|
2919
2919
|
|
|
2920
2920
|
return object(getter, value_1)
|
|
2921
2921
|
|
|
2922
2922
|
|
|
2923
|
-
Decode_intentDecoder: Callable[[YAMLElement], Array[str] | None] =
|
|
2923
|
+
Decode_intentDecoder: Callable[[YAMLElement], Array[str] | None] = _arrow1007
|
|
2924
2924
|
|
|
2925
2925
|
def Decode_hasField(field_name: str, yaml_element: YAMLElement) -> bool:
|
|
2926
2926
|
if yaml_element.tag == 3:
|
|
@@ -3017,19 +3017,19 @@ def Decode_workflowStepRunDecoder(default_cwl_version: str, run_value: YAMLEleme
|
|
|
3017
3017
|
|
|
3018
3018
|
|
|
3019
3019
|
def Decode_decodeWorkflowStepFromValueWithId(default_cwl_version: str, step_id: str, value: YAMLElement) -> WorkflowStep:
|
|
3020
|
-
def
|
|
3020
|
+
def _arrow1008(get_0027: IGetters, default_cwl_version: Any=default_cwl_version, step_id: Any=step_id, value: Any=value) -> YAMLElement:
|
|
3021
3021
|
object_arg: IRequiredGetter = get_0027.Required
|
|
3022
3022
|
def arg_1(x: YAMLElement) -> YAMLElement:
|
|
3023
3023
|
return x
|
|
3024
3024
|
|
|
3025
3025
|
return object_arg.Field("run", arg_1)
|
|
3026
3026
|
|
|
3027
|
-
run: WorkflowStepRun = Decode_workflowStepRunDecoder(default_cwl_version, object(
|
|
3028
|
-
def
|
|
3027
|
+
run: WorkflowStepRun = Decode_workflowStepRunDecoder(default_cwl_version, object(_arrow1008, value))
|
|
3028
|
+
def _arrow1009(get_0027_1: IGetters, default_cwl_version: Any=default_cwl_version, step_id: Any=step_id, value: Any=value) -> Array[StepInput]:
|
|
3029
3029
|
object_arg_1: IRequiredGetter = get_0027_1.Required
|
|
3030
3030
|
return object_arg_1.Field("in", Decode_inputStepDecoder)
|
|
3031
3031
|
|
|
3032
|
-
inputs: Array[StepInput] = object(
|
|
3032
|
+
inputs: Array[StepInput] = object(_arrow1009, value)
|
|
3033
3033
|
outputs: Array[StepOutput] = Decode_outputStepsDecoder(value)
|
|
3034
3034
|
requirements: Array[Requirement] | None = Decode_requirementsDecoder(value)
|
|
3035
3035
|
hints: Array[HintEntry] | None = Decode_hintsDecoder(value)
|
|
@@ -3083,22 +3083,22 @@ def Decode_stepArrayDecoderWithVersion(default_cwl_version: str, value: YAMLElem
|
|
|
3083
3083
|
return list(map(mapping, items))
|
|
3084
3084
|
|
|
3085
3085
|
elif pattern_matching_result == 1:
|
|
3086
|
-
def
|
|
3086
|
+
def _arrow1010(get: IGetters, default_cwl_version: Any=default_cwl_version, value: Any=value) -> Any:
|
|
3087
3087
|
return get.Overflow.FieldList(empty())
|
|
3088
3088
|
|
|
3089
|
-
dict_1: Any = object(
|
|
3090
|
-
def
|
|
3091
|
-
def
|
|
3089
|
+
dict_1: Any = object(_arrow1010, value)
|
|
3090
|
+
def _arrow1012(__unit: None=None, default_cwl_version: Any=default_cwl_version, value: Any=value) -> IEnumerable_1[WorkflowStep]:
|
|
3091
|
+
def _arrow1011(key: str) -> WorkflowStep:
|
|
3092
3092
|
return Decode_decodeWorkflowStepFromValueWithId(default_cwl_version, key, get_item_from_dict(dict_1, key))
|
|
3093
3093
|
|
|
3094
|
-
return map_2(
|
|
3094
|
+
return map_2(_arrow1011, dict_1.keys())
|
|
3095
3095
|
|
|
3096
|
-
return list(to_array(delay(
|
|
3096
|
+
return list(to_array(delay(_arrow1012)))
|
|
3097
3097
|
|
|
3098
3098
|
|
|
3099
3099
|
|
|
3100
3100
|
def Decode_stepsDecoderWithVersion(default_cwl_version: str) -> Callable[[YAMLElement], Array[WorkflowStep]]:
|
|
3101
|
-
def
|
|
3101
|
+
def _arrow1013(value_1: YAMLElement, default_cwl_version: Any=default_cwl_version) -> Array[WorkflowStep]:
|
|
3102
3102
|
def getter(get: IGetters) -> Array[WorkflowStep]:
|
|
3103
3103
|
object_arg: IRequiredGetter = get.Required
|
|
3104
3104
|
def arg_1(value: YAMLElement, get: Any=get) -> Array[WorkflowStep]:
|
|
@@ -3108,7 +3108,7 @@ def Decode_stepsDecoderWithVersion(default_cwl_version: str) -> Callable[[YAMLEl
|
|
|
3108
3108
|
|
|
3109
3109
|
return object(getter, value_1)
|
|
3110
3110
|
|
|
3111
|
-
return
|
|
3111
|
+
return _arrow1013
|
|
3112
3112
|
|
|
3113
3113
|
|
|
3114
3114
|
def Decode_commandLineToolDecoder(yaml_cwl: YAMLElement) -> CWLToolDescription:
|
|
@@ -3169,11 +3169,11 @@ def Decode_expressionToolDecoder(yaml_cwl: YAMLElement) -> CWLExpressionToolDesc
|
|
|
3169
3169
|
intent: Array[str] | None = Decode_intentDecoder(yaml_cwl)
|
|
3170
3170
|
doc: str | None = Decode_docDecoder(yaml_cwl)
|
|
3171
3171
|
label: str | None = Decode_labelDecoder(yaml_cwl)
|
|
3172
|
-
def
|
|
3172
|
+
def _arrow1015(get: IGetters, yaml_cwl: Any=yaml_cwl) -> str:
|
|
3173
3173
|
object_arg: IRequiredGetter = get.Required
|
|
3174
3174
|
return object_arg.Field("expression", Decode_decodeStringOrExpression)
|
|
3175
3175
|
|
|
3176
|
-
description: CWLExpressionToolDescription = CWLExpressionToolDescription(outputs, object(
|
|
3176
|
+
description: CWLExpressionToolDescription = CWLExpressionToolDescription(outputs, object(_arrow1015, yaml_cwl), cwl_version)
|
|
3177
3177
|
metadata: DynamicObj
|
|
3178
3178
|
md: DynamicObj = DynamicObj()
|
|
3179
3179
|
def getter(get_1: IGetters, yaml_cwl: Any=yaml_cwl) -> DynamicObj:
|
|
@@ -3327,11 +3327,11 @@ def Decode_decodeCWLProcessingUnitElement(yaml_cwl: YAMLElement) -> CWLProcessin
|
|
|
3327
3327
|
|
|
3328
3328
|
|
|
3329
3329
|
|
|
3330
|
-
def
|
|
3330
|
+
def _arrow1017(value: YAMLElement) -> Array[WorkflowStep]:
|
|
3331
3331
|
return Decode_stepArrayDecoderWithVersion("v1.2", value)
|
|
3332
3332
|
|
|
3333
3333
|
|
|
3334
|
-
Decode_stepArrayDecoder: Callable[[YAMLElement], Array[WorkflowStep]] =
|
|
3334
|
+
Decode_stepArrayDecoder: Callable[[YAMLElement], Array[WorkflowStep]] = _arrow1017
|
|
3335
3335
|
|
|
3336
3336
|
Decode_stepsDecoder: Callable[[YAMLElement], Array[WorkflowStep]] = Decode_stepsDecoderWithVersion("v1.2")
|
|
3337
3337
|
|
|
@@ -3479,10 +3479,10 @@ def DecodeParameters_cwlParameterReferenceDecoder(get: IGetters, key: str, y_ele
|
|
|
3479
3479
|
|
|
3480
3480
|
|
|
3481
3481
|
if not exists(predicate, mappings):
|
|
3482
|
-
def
|
|
3482
|
+
def _arrow1018(value: YAMLElement, get: Any=get, key: Any=key, y_ele: Any=y_ele) -> str:
|
|
3483
3483
|
return string(value)
|
|
3484
3484
|
|
|
3485
|
-
return CWLParameterReference(key, resizearray(
|
|
3485
|
+
return CWLParameterReference(key, resizearray(_arrow1018, YAMLElement(2, s)))
|
|
3486
3486
|
|
|
3487
3487
|
else:
|
|
3488
3488
|
def predicate_1(_arg_1: YAMLElement, get: Any=get, key: Any=key, y_ele: Any=y_ele) -> bool:
|
|
@@ -3560,10 +3560,10 @@ def DecodeParameters_cwlParameterReferenceDecoder(get: IGetters, key: str, y_ele
|
|
|
3560
3560
|
|
|
3561
3561
|
|
|
3562
3562
|
elif pattern_matching_result_1 == 1:
|
|
3563
|
-
def
|
|
3563
|
+
def _arrow1019(value_1: YAMLElement, get: Any=get, key: Any=key, y_ele: Any=y_ele) -> str:
|
|
3564
3564
|
return string(value_1)
|
|
3565
3565
|
|
|
3566
|
-
return CWLParameterReference(key, resizearray(
|
|
3566
|
+
return CWLParameterReference(key, resizearray(_arrow1019, YAMLElement(2, s)))
|
|
3567
3567
|
|
|
3568
3568
|
|
|
3569
3569
|
elif pattern_matching_result == 3:
|
|
@@ -3571,21 +3571,21 @@ def DecodeParameters_cwlParameterReferenceDecoder(get: IGetters, key: str, y_ele
|
|
|
3571
3571
|
|
|
3572
3572
|
|
|
3573
3573
|
|
|
3574
|
-
def
|
|
3574
|
+
def _arrow1022(value: YAMLElement) -> Array[CWLParameterReference]:
|
|
3575
3575
|
def getter(get: IGetters) -> Array[CWLParameterReference]:
|
|
3576
3576
|
dict_1: Any = get.Overflow.FieldList(empty())
|
|
3577
|
-
def
|
|
3578
|
-
def
|
|
3577
|
+
def _arrow1021(__unit: None=None, get: Any=get) -> IEnumerable_1[CWLParameterReference]:
|
|
3578
|
+
def _arrow1020(ele: Any) -> CWLParameterReference:
|
|
3579
3579
|
return DecodeParameters_cwlParameterReferenceDecoder(get, ele[0], ele[1])
|
|
3580
3580
|
|
|
3581
|
-
return map_2(
|
|
3581
|
+
return map_2(_arrow1020, dict_1)
|
|
3582
3582
|
|
|
3583
|
-
return list(to_array(delay(
|
|
3583
|
+
return list(to_array(delay(_arrow1021)))
|
|
3584
3584
|
|
|
3585
3585
|
return object(getter, value)
|
|
3586
3586
|
|
|
3587
3587
|
|
|
3588
|
-
DecodeParameters_cwlparameterReferenceArrayDecoder: Callable[[YAMLElement], Array[CWLParameterReference]] =
|
|
3588
|
+
DecodeParameters_cwlparameterReferenceArrayDecoder: Callable[[YAMLElement], Array[CWLParameterReference]] = _arrow1022
|
|
3589
3589
|
|
|
3590
3590
|
def DecodeParameters_decodeYAMLParameterFile(yaml: str) -> Array[CWLParameterReference]:
|
|
3591
3591
|
return DecodeParameters_cwlparameterReferenceArrayDecoder(read(yaml))
|