arctrl 3.0.0b9__tar.gz → 3.0.0b10__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (464) hide show
  1. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/PKG-INFO +1 -1
  2. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/pyproject.toml +43 -43
  3. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/tool_description.py +2 -2
  4. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/workflow_description.py +2 -2
  5. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/datamap.py +6 -6
  6. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/license.py +6 -6
  7. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ContractIO/contract_io.py +52 -52
  8. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/material.py +2 -2
  9. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/material_attribute_value.py +2 -2
  10. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/process.py +4 -4
  11. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/process_sequence.py +12 -12
  12. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/arc_table.py +56 -56
  13. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/arc_tables.py +22 -22
  14. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/composite_cell.py +2 -2
  15. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/composite_column.py +6 -6
  16. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/composite_header.py +6 -6
  17. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/arc_types.py +613 -613
  18. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/conversion.py +100 -100
  19. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/ontology_annotation.py +15 -15
  20. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/ontology_source_reference.py +2 -2
  21. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/publication.py +7 -7
  22. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/value.py +2 -2
  23. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/file_system.py +4 -4
  24. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/DataMap/data_context.py +24 -24
  25. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/DataMap/data_map.py +6 -6
  26. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/factor.py +19 -19
  27. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/factor_value.py +11 -11
  28. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/process_input.py +10 -10
  29. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/sample.py +12 -12
  30. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/ROCrate/ldref.py +10 -10
  31. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Table/arc_table.py +85 -85
  32. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Table/cell_table.py +6 -6
  33. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
  34. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Table/templates.py +65 -65
  35. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/context/rocrate/isa_assay_context.py +13 -13
  36. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/context/rocrate/isa_comment_context.py +11 -11
  37. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/context/rocrate/isa_person_context.py +6 -6
  38. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/context/rocrate/isa_process_context.py +5 -5
  39. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/context/rocrate/rocrate_context.py +7 -7
  40. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/converter_options.py +2 -2
  41. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/data_file.py +8 -8
  42. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/decode.py +4 -4
  43. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/encode.py +16 -16
  44. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/investigation.py +81 -81
  45. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/ontology_source_reference.py +44 -44
  46. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/person.py +117 -117
  47. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/publication.py +68 -68
  48. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/run.py +72 -72
  49. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/study.py +46 -46
  50. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ROCrate/Generic/dataset.py +6 -6
  51. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ROCrate/Generic/organization.py +2 -2
  52. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ROCrate/Generic/postal_address.py +8 -8
  53. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ROCrate/ISAProfile/lab_process.py +10 -10
  54. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/AnnotationTable/composite_cell.py +12 -12
  55. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/AnnotationTable/composite_column.py +70 -70
  56. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/AnnotationTable/composite_header.py +70 -70
  57. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/assays.py +8 -8
  58. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/contacts.py +10 -10
  59. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/factors.py +6 -6
  60. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_annotation.py +8 -8
  61. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_source_reference.py +8 -8
  62. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/protocols.py +9 -9
  63. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/publication.py +10 -10
  64. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/run.py +6 -6
  65. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/sparse_table.py +32 -32
  66. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/study.py +32 -32
  67. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Spreadsheet/Metadata/workflow.py +4 -4
  68. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/WebRequest/web_request_py.py +2 -2
  69. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +2 -2
  70. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +31 -31
  71. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +6 -6
  72. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/types.py +2 -2
  73. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/cell.py +26 -26
  74. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/column.py +8 -8
  75. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/row.py +12 -12
  76. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +2 -2
  77. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +2 -2
  78. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +2 -2
  79. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +2 -2
  80. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_column.py +2 -2
  81. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +2 -2
  82. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +6 -6
  83. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/thoth_json_core/decode.py +36 -36
  84. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/thoth_json_python/decode.py +4 -4
  85. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/thoth_json_python/encode.py +2 -2
  86. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/fable_modules/yamlicious/decode.py +20 -20
  87. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/template_web.py +4 -4
  88. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/LICENSE +0 -0
  89. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/README.md +0 -0
  90. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/__init__.py +0 -0
  91. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/__init__.py +0 -0
  92. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/cwltypes.py +0 -0
  93. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/decode.py +0 -0
  94. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/encode.py +0 -0
  95. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/inputs.py +0 -0
  96. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/outputs.py +0 -0
  97. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/requirements.py +0 -0
  98. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/CWL/workflow_steps.py +0 -0
  99. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/__init__.py +0 -0
  100. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/arc.py +0 -0
  101. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/arc_assay.py +0 -0
  102. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/arc_investigation.py +0 -0
  103. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/arc_run.py +0 -0
  104. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/arc_study.py +0 -0
  105. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/arc_workflow.py +0 -0
  106. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/contract.py +0 -0
  107. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/git.py +0 -0
  108. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Contract/validation_packages_config.py +0 -0
  109. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ContractIO/__init__.py +0 -0
  110. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/ContractIO/file_system_helper.py +0 -0
  111. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/__init__.py +0 -0
  112. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/collections_.py +0 -0
  113. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/date_time.py +0 -0
  114. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/hash_codes.py +0 -0
  115. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/identifier.py +0 -0
  116. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/orcid.py +0 -0
  117. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/printer.py +0 -0
  118. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/regex.py +0 -0
  119. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/sem_ver.py +0 -0
  120. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Helper/url.py +0 -0
  121. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/__init__.py +0 -0
  122. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/column_index.py +0 -0
  123. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/component.py +0 -0
  124. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/factor.py +0 -0
  125. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/factor_value.py +0 -0
  126. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/material_attribute.py +0 -0
  127. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/material_type.py +0 -0
  128. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/process_input.py +0 -0
  129. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/process_output.py +0 -0
  130. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/process_parameter_value.py +0 -0
  131. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/protocol.py +0 -0
  132. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/protocol_parameter.py +0 -0
  133. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/sample.py +0 -0
  134. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Process/source.py +0 -0
  135. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/__init__.py +0 -0
  136. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/Table/arc_table_aux.py +0 -0
  137. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/__init__.py +0 -0
  138. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/comment.py +0 -0
  139. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/comment_list.py +0 -0
  140. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/data.py +0 -0
  141. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/data_context.py +0 -0
  142. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/data_file.py +0 -0
  143. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/data_map.py +0 -0
  144. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/identifier_setters.py +0 -0
  145. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/iproperty_value.py +0 -0
  146. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/person.py +0 -0
  147. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/template.py +0 -0
  148. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/templates.py +0 -0
  149. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Core/uri.py +0 -0
  150. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/__init__.py +0 -0
  151. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/commit.py +0 -0
  152. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/default_gitattributes.py +0 -0
  153. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/default_gitignore.py +0 -0
  154. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/default_license.py +0 -0
  155. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/file_system_tree.py +0 -0
  156. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/FileSystem/path.py +0 -0
  157. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/DataMap/__init__.py +0 -0
  158. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/__init__.py +0 -0
  159. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/assay_materials.py +0 -0
  160. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/component.py +0 -0
  161. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/material.py +0 -0
  162. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/material_attribute.py +0 -0
  163. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/material_attribute_value.py +0 -0
  164. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/material_type.py +0 -0
  165. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/process.py +0 -0
  166. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/process_output.py +0 -0
  167. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/process_parameter_value.py +0 -0
  168. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/protocol.py +0 -0
  169. {arctrl-3.0.0b9 → arctrl-3.0.0b10}/src/ARCtrl/py/Json/Process/protocol_parameter.py +0 -0
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@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: arctrl
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- Version: 3.0.0b9
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+ Version: 3.0.0b10
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4
  Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
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  License-File: LICENSE
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6
  Keywords: arc,annotated research context,isa,research data,multi platform
@@ -1,43 +1,43 @@
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- [project]
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- name = "arctrl"
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- version = "3.0.0b9"
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- description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
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- authors = [
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- { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
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- { name = "Kevin Frey", email = "freymaurer@gmx.de" },
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- ]
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- requires-python = ">=3.11"
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- readme = "README.md"
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- maintainers = [{ name = "Florian Wetzels" }]
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- keywords = [
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- "arc",
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- "annotated research context",
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- "isa",
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- "research data",
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- "multi platform",
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- ]
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- dependencies = [
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- "requests>= 2.28.1, <3.0.0",
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- "openpyxl>=3.1.5,<4",
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- ]
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-
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- [project.urls]
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- Repository = "https://github.com/nfdi4plants/ARCtrl"
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-
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- [dependency-groups]
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- dev = [
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- "pytest>=8.1.1,<9",
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- "twine>=4.0.2"
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- ]
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-
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- [tool.poetry]
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- include = [
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- "src/ARCtrl/py/**/*.py"
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- ]
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- packages = [
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- { include = "**/*.py", from = "src/ARCtrl/", to = "arctrl" }
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- ]
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-
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- [build-system]
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- requires = ["poetry-core"]
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- build-backend = "poetry.core.masonry.api"
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+ [project]
2
+ name = "arctrl"
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+ version = "3.0.0b10"
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+ description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
5
+ authors = [
6
+ { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
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+ { name = "Kevin Frey", email = "freymaurer@gmx.de" },
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+ ]
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+ requires-python = ">=3.11"
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+ readme = "README.md"
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+ maintainers = [{ name = "Florian Wetzels" }]
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+ keywords = [
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+ "arc",
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+ "annotated research context",
15
+ "isa",
16
+ "research data",
17
+ "multi platform",
18
+ ]
19
+ dependencies = [
20
+ "requests>= 2.28.1, <3.0.0",
21
+ "openpyxl>=3.1.5,<4",
22
+ ]
23
+
24
+ [project.urls]
25
+ Repository = "https://github.com/nfdi4plants/ARCtrl"
26
+
27
+ [dependency-groups]
28
+ dev = [
29
+ "pytest>=8.1.1,<9",
30
+ "twine>=4.0.2"
31
+ ]
32
+
33
+ [tool.poetry]
34
+ include = [
35
+ "src/ARCtrl/py/**/*.py"
36
+ ]
37
+ packages = [
38
+ { include = "**/*.py", from = "src/ARCtrl/", to = "arctrl" }
39
+ ]
40
+
41
+ [build-system]
42
+ requires = ["poetry-core"]
43
+ build-backend = "poetry.core.masonry.api"
@@ -7,7 +7,7 @@ from .inputs import CWLInput
7
7
  from .outputs import CWLOutput
8
8
  from .requirements import Requirement
9
9
 
10
- def _expr3393() -> TypeInfo:
10
+ def _expr3375() -> TypeInfo:
11
11
  return class_type("ARCtrl.CWL.CWLToolDescription", None, CWLToolDescription, DynamicObj_reflection())
12
12
 
13
13
 
@@ -93,7 +93,7 @@ class CWLToolDescription(DynamicObj):
93
93
  this._metadata = metadata
94
94
 
95
95
 
96
- CWLToolDescription_reflection = _expr3393
96
+ CWLToolDescription_reflection = _expr3375
97
97
 
98
98
  def CWLToolDescription__ctor_Z3224DB85(outputs: Array[CWLOutput], cwl_version: str | None=None, base_command: Array[str] | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, inputs: Array[CWLInput] | None=None, metadata: DynamicObj | None=None) -> CWLToolDescription:
99
99
  return CWLToolDescription(outputs, cwl_version, base_command, requirements, hints, inputs, metadata)
@@ -8,7 +8,7 @@ from .outputs import CWLOutput
8
8
  from .requirements import Requirement
9
9
  from .workflow_steps import WorkflowStep
10
10
 
11
- def _expr3461() -> TypeInfo:
11
+ def _expr3419() -> TypeInfo:
12
12
  return class_type("ARCtrl.CWL.CWLWorkflowDescription", None, CWLWorkflowDescription, DynamicObj_reflection())
13
13
 
14
14
 
@@ -94,7 +94,7 @@ class CWLWorkflowDescription(DynamicObj):
94
94
  this._metadata = metadata
95
95
 
96
96
 
97
- CWLWorkflowDescription_reflection = _expr3461
97
+ CWLWorkflowDescription_reflection = _expr3419
98
98
 
99
99
  def CWLWorkflowDescription__ctor_704BBD06(steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> CWLWorkflowDescription:
100
100
  return CWLWorkflowDescription(steps, inputs, outputs, cwl_version, requirements, hints, metadata)
@@ -329,17 +329,17 @@ def ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5(this: DataMap, run_
329
329
 
330
330
 
331
331
  def ARCtrl_DataMap__DataMap_toDeleteContractForRun_Static_Z721C83C5(run_identifier: str) -> Callable[[DataMap], Contract]:
332
- def _arrow3623(data_map: DataMap, run_identifier: Any=run_identifier) -> Contract:
332
+ def _arrow3620(data_map: DataMap, run_identifier: Any=run_identifier) -> Contract:
333
333
  return ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5(data_map, run_identifier)
334
334
 
335
- return _arrow3623
335
+ return _arrow3620
336
336
 
337
337
 
338
338
  def ARCtrl_DataMap__DataMap_toUpdateContractForRun_Static_Z721C83C5(run_identifier: str) -> Callable[[DataMap], Contract]:
339
- def _arrow3624(data_map: DataMap, run_identifier: Any=run_identifier) -> Contract:
339
+ def _arrow3621(data_map: DataMap, run_identifier: Any=run_identifier) -> Contract:
340
340
  return ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5(data_map, run_identifier)
341
341
 
342
- return _arrow3624
342
+ return _arrow3621
343
343
 
344
344
 
345
345
  def ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(run_identifier: str, c: Contract) -> DataMap | None:
@@ -350,11 +350,11 @@ def ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(run_identifier: str
350
350
  if c.DTOType.tag == 5:
351
351
  if c.DTO is not None:
352
352
  if c.DTO.tag == 0:
353
- def _arrow3625(__unit: None=None, run_identifier: Any=run_identifier, c: Any=c) -> bool:
353
+ def _arrow3622(__unit: None=None, run_identifier: Any=run_identifier, c: Any=c) -> bool:
354
354
  fsworkbook: Any = c.DTO.fields[0]
355
355
  return c.Path == path
356
356
 
357
- if _arrow3625():
357
+ if _arrow3622():
358
358
  pattern_matching_result = 0
359
359
  fsworkbook_1 = c.DTO.fields[0]
360
360
  p_1 = c.Path
@@ -10,27 +10,27 @@ from .contract import (Contract, DTOType, DTO)
10
10
 
11
11
  def LicenseContractExtensions__007CLicensePath_007C__007C(input: Array[str]) -> str | None:
12
12
  (pattern_matching_result,) = (None,)
13
- def _arrow3620(x: str, y: str, input: Any=input) -> bool:
13
+ def _arrow3623(x: str, y: str, input: Any=input) -> bool:
14
14
  return x == y
15
15
 
16
- if (len(input) == 1) if (not equals_with(_arrow3620, input, None)) else False:
16
+ if (len(input) == 1) if (not equals_with(_arrow3623, input, None)) else False:
17
17
  if input[0] == "LICENSE":
18
18
  pattern_matching_result = 0
19
19
 
20
20
  else:
21
- class ObjectExpr3622:
21
+ class ObjectExpr3625:
22
22
  @property
23
23
  def Equals(self) -> Callable[[str, str], bool]:
24
- def _arrow3621(x_1: str, y_1: str) -> bool:
24
+ def _arrow3624(x_1: str, y_1: str) -> bool:
25
25
  return x_1 == y_1
26
26
 
27
- return _arrow3621
27
+ return _arrow3624
28
28
 
29
29
  @property
30
30
  def GetHashCode(self) -> Callable[[str], int]:
31
31
  return string_hash
32
32
 
33
- if contains(input[0], alternative_licensefile_names, ObjectExpr3622()):
33
+ if contains(input[0], alternative_licensefile_names, ObjectExpr3625()):
34
34
  pattern_matching_result = 1
35
35
 
36
36
  else:
@@ -15,14 +15,14 @@ from .file_system_helper import (read_file_xlsx_async, read_file_text_async, ens
15
15
 
16
16
  def fulfill_read_contract_async(base_path: str, c: Contract) -> Async[FSharpResult_2[Contract, str]]:
17
17
  def f(e_1: Exception, base_path: Any=base_path, c: Any=c) -> FSharpResult_2[Contract, str]:
18
- def _arrow3804(__unit: None=None, e_1: Any=e_1) -> str:
18
+ def _arrow3806(__unit: None=None, e_1: Any=e_1) -> str:
19
19
  arg_4: str = str(e_1)
20
20
  return to_text(printf("Error reading contract %s: %s"))(c.Path)(arg_4)
21
21
 
22
- return FSharpResult_2(1, _arrow3804())
22
+ return FSharpResult_2(1, _arrow3806())
23
23
 
24
- def _arrow3810(__unit: None=None, base_path: Any=base_path, c: Any=c) -> Async[FSharpResult_2[Contract, str]]:
25
- def _arrow3807(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
24
+ def _arrow3812(__unit: None=None, base_path: Any=base_path, c: Any=c) -> Async[FSharpResult_2[Contract, str]]:
25
+ def _arrow3809(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
26
26
  match_value: DTOType | None = c.DTOType
27
27
  (pattern_matching_result,) = (None,)
28
28
  if match_value is not None:
@@ -56,37 +56,37 @@ def fulfill_read_contract_async(base_path: str, c: Contract) -> Async[FSharpResu
56
56
 
57
57
  if pattern_matching_result == 0:
58
58
  path: str = combine(base_path, c.Path)
59
- def _arrow3805(_arg: FsWorkbook) -> Async[FSharpResult_2[Contract, str]]:
59
+ def _arrow3807(_arg: FsWorkbook) -> Async[FSharpResult_2[Contract, str]]:
60
60
  return singleton.Return(FSharpResult_2(0, Contract(c.Operation, c.Path, c.DTOType, DTO_2(0, _arg))))
61
61
 
62
- return singleton.Bind(read_file_xlsx_async(path), _arrow3805)
62
+ return singleton.Bind(read_file_xlsx_async(path), _arrow3807)
63
63
 
64
64
  elif pattern_matching_result == 1:
65
65
  path_1: str = combine(base_path, c.Path)
66
- def _arrow3806(_arg_1: str) -> Async[FSharpResult_2[Contract, str]]:
66
+ def _arrow3808(_arg_1: str) -> Async[FSharpResult_2[Contract, str]]:
67
67
  return singleton.Return(FSharpResult_2(0, Contract(c.Operation, c.Path, c.DTOType, DTO_2(1, _arg_1))))
68
68
 
69
- return singleton.Bind(read_file_text_async(path_1), _arrow3806)
69
+ return singleton.Bind(read_file_text_async(path_1), _arrow3808)
70
70
 
71
71
  elif pattern_matching_result == 2:
72
72
  return singleton.Return(FSharpResult_2(1, to_text(printf("Contract %s is neither an ISA nor a freetext contract"))(c.Path)))
73
73
 
74
74
 
75
- def _arrow3809(_arg_2: Exception) -> Async[FSharpResult_2[Contract, str]]:
76
- def _arrow3808(__unit: None=None) -> str:
75
+ def _arrow3811(_arg_2: Exception) -> Async[FSharpResult_2[Contract, str]]:
76
+ def _arrow3810(__unit: None=None) -> str:
77
77
  arg_2: str = str(_arg_2)
78
78
  return to_text(printf("Error reading contract %s: %s"))(c.Path)(arg_2)
79
79
 
80
- return singleton.Return(FSharpResult_2(1, _arrow3808()))
80
+ return singleton.Return(FSharpResult_2(1, _arrow3810()))
81
81
 
82
- return singleton.TryWith(singleton.Delay(_arrow3807), _arrow3809)
82
+ return singleton.TryWith(singleton.Delay(_arrow3809), _arrow3811)
83
83
 
84
- return catch_with(f, singleton.Delay(_arrow3810))
84
+ return catch_with(f, singleton.Delay(_arrow3812))
85
85
 
86
86
 
87
87
  def fullfill_contract_batch_async_by(contract_f: Callable[[str, Contract], Async[FSharpResult_2[Contract, str]]], base_path: str, cs: Array[Contract]) -> Async[FSharpResult_2[Array[Contract], Array[str]]]:
88
- def _arrow3812(__unit: None=None, contract_f: Any=contract_f, base_path: Any=base_path, cs: Any=cs) -> Async[FSharpResult_2[Array[Contract], Array[str]]]:
89
- def _arrow3811(_arg: Array[FSharpResult_2[Contract, str]]) -> Async[FSharpResult_2[Array[Contract], Array[str]]]:
88
+ def _arrow3814(__unit: None=None, contract_f: Any=contract_f, base_path: Any=base_path, cs: Any=cs) -> Async[FSharpResult_2[Array[Contract], Array[str]]]:
89
+ def _arrow3813(_arg: Array[FSharpResult_2[Contract, str]]) -> Async[FSharpResult_2[Array[Contract], Array[str]]]:
90
90
  def folder(acc: FSharpResult_2[Array[Contract], Array[str]], cr: FSharpResult_2[Contract, str]) -> FSharpResult_2[Array[Contract], Array[str]]:
91
91
  copy_of_struct: FSharpResult_2[Array[Contract], Array[str]] = acc
92
92
  if copy_of_struct.tag == 1:
@@ -111,112 +111,112 @@ def fullfill_contract_batch_async_by(contract_f: Callable[[str, Contract], Async
111
111
  res: FSharpResult_2[Array[Contract], Array[str]] = fold(folder, FSharpResult_2(0, []), _arg)
112
112
  return singleton.Return(res)
113
113
 
114
- return singleton.Bind(start_sequential(curry2(contract_f)(base_path), cs), _arrow3811)
114
+ return singleton.Bind(start_sequential(curry2(contract_f)(base_path), cs), _arrow3813)
115
115
 
116
- return singleton.Delay(_arrow3812)
116
+ return singleton.Delay(_arrow3814)
117
117
 
118
118
 
119
119
  def fulfill_write_contract_async(base_path: str, c: Contract) -> Async[FSharpResult_2[Contract, str]]:
120
120
  def f(e_1: Exception, base_path: Any=base_path, c: Any=c) -> FSharpResult_2[Contract, str]:
121
- def _arrow3813(__unit: None=None, e_1: Any=e_1) -> str:
121
+ def _arrow3815(__unit: None=None, e_1: Any=e_1) -> str:
122
122
  arg_4: str = str(e_1)
123
123
  return to_text(printf("Error writing contract %s: %s"))(c.Path)(arg_4)
124
124
 
125
- return FSharpResult_2(1, _arrow3813())
125
+ return FSharpResult_2(1, _arrow3815())
126
126
 
127
- def _arrow3823(__unit: None=None, base_path: Any=base_path, c: Any=c) -> Async[FSharpResult_2[Contract, str]]:
128
- def _arrow3820(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
127
+ def _arrow3825(__unit: None=None, base_path: Any=base_path, c: Any=c) -> Async[FSharpResult_2[Contract, str]]:
128
+ def _arrow3822(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
129
129
  match_value: DTO_2 | None = c.DTO
130
130
  if match_value is None:
131
131
  path_2: str = combine(base_path, c.Path)
132
- def _arrow3815(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
133
- def _arrow3814(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
132
+ def _arrow3817(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
133
+ def _arrow3816(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
134
134
  return singleton.Return(FSharpResult_2(0, c))
135
135
 
136
- return singleton.Bind(write_file_text_async(path_2, ""), _arrow3814)
136
+ return singleton.Bind(write_file_text_async(path_2, ""), _arrow3816)
137
137
 
138
- return singleton.Bind(ensure_directory_of_file_async(path_2), _arrow3815)
138
+ return singleton.Bind(ensure_directory_of_file_async(path_2), _arrow3817)
139
139
 
140
140
  elif match_value.tag == 1:
141
141
  t: str = match_value.fields[0]
142
142
  path: str = combine(base_path, c.Path)
143
- def _arrow3817(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
144
- def _arrow3816(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
143
+ def _arrow3819(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
144
+ def _arrow3818(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
145
145
  return singleton.Return(FSharpResult_2(0, c))
146
146
 
147
- return singleton.Bind(write_file_text_async(path, t), _arrow3816)
147
+ return singleton.Bind(write_file_text_async(path, t), _arrow3818)
148
148
 
149
- return singleton.Bind(ensure_directory_of_file_async(path), _arrow3817)
149
+ return singleton.Bind(ensure_directory_of_file_async(path), _arrow3819)
150
150
 
151
151
  elif match_value.tag == 0:
152
152
  wb: Any = match_value.fields[0]
153
153
  path_1: str = combine(base_path, c.Path)
154
- def _arrow3819(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
155
- def _arrow3818(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
154
+ def _arrow3821(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
155
+ def _arrow3820(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
156
156
  return singleton.Return(FSharpResult_2(0, c))
157
157
 
158
- return singleton.Bind(write_file_xlsx_async(path_1, wb), _arrow3818)
158
+ return singleton.Bind(write_file_xlsx_async(path_1, wb), _arrow3820)
159
159
 
160
- return singleton.Bind(ensure_directory_of_file_async(path_1), _arrow3819)
160
+ return singleton.Bind(ensure_directory_of_file_async(path_1), _arrow3821)
161
161
 
162
162
  else:
163
163
  return singleton.Return(FSharpResult_2(1, to_text(printf("Contract %s is not an ISA contract"))(c.Path)))
164
164
 
165
165
 
166
- def _arrow3822(_arg_6: Exception) -> Async[FSharpResult_2[Contract, str]]:
167
- def _arrow3821(__unit: None=None) -> str:
166
+ def _arrow3824(_arg_6: Exception) -> Async[FSharpResult_2[Contract, str]]:
167
+ def _arrow3823(__unit: None=None) -> str:
168
168
  arg_2: str = str(_arg_6)
169
169
  return to_text(printf("Error writing contract %s: %s"))(c.Path)(arg_2)
170
170
 
171
- return singleton.Return(FSharpResult_2(1, _arrow3821()))
171
+ return singleton.Return(FSharpResult_2(1, _arrow3823()))
172
172
 
173
- return singleton.TryWith(singleton.Delay(_arrow3820), _arrow3822)
173
+ return singleton.TryWith(singleton.Delay(_arrow3822), _arrow3824)
174
174
 
175
- return catch_with(f, singleton.Delay(_arrow3823))
175
+ return catch_with(f, singleton.Delay(_arrow3825))
176
176
 
177
177
 
178
178
  def fulfill_update_contract_async(base_path: str, c: Contract) -> Async[FSharpResult_2[Contract, str]]:
179
179
  def f(e_1: Exception, base_path: Any=base_path, c: Any=c) -> FSharpResult_2[Contract, str]:
180
- def _arrow3824(__unit: None=None, e_1: Any=e_1) -> str:
180
+ def _arrow3826(__unit: None=None, e_1: Any=e_1) -> str:
181
181
  arg_4: str = str(e_1)
182
182
  return to_text(printf("Error updating contract %s: %s"))(c.Path)(arg_4)
183
183
 
184
- return FSharpResult_2(1, _arrow3824())
184
+ return FSharpResult_2(1, _arrow3826())
185
185
 
186
186
  def _arrow3836(__unit: None=None, base_path: Any=base_path, c: Any=c) -> Async[FSharpResult_2[Contract, str]]:
187
187
  def _arrow3833(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
188
188
  match_value: DTO_2 | None = c.DTO
189
189
  if match_value is None:
190
190
  path_2: str = combine(base_path, c.Path)
191
- def _arrow3826(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
192
- def _arrow3825(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
191
+ def _arrow3828(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
192
+ def _arrow3827(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
193
193
  return singleton.Return(FSharpResult_2(0, c))
194
194
 
195
- return singleton.Bind(write_file_text_async(path_2, ""), _arrow3825)
195
+ return singleton.Bind(write_file_text_async(path_2, ""), _arrow3827)
196
196
 
197
- return singleton.Bind(ensure_directory_of_file_async(path_2), _arrow3826)
197
+ return singleton.Bind(ensure_directory_of_file_async(path_2), _arrow3828)
198
198
 
199
199
  elif match_value.tag == 1:
200
200
  t: str = match_value.fields[0]
201
201
  path: str = combine(base_path, c.Path)
202
- def _arrow3828(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
203
- def _arrow3827(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
202
+ def _arrow3830(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
203
+ def _arrow3829(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
204
204
  return singleton.Return(FSharpResult_2(0, c))
205
205
 
206
- return singleton.Bind(write_file_text_async(path, t), _arrow3827)
206
+ return singleton.Bind(write_file_text_async(path, t), _arrow3829)
207
207
 
208
- return singleton.Bind(ensure_directory_of_file_async(path), _arrow3828)
208
+ return singleton.Bind(ensure_directory_of_file_async(path), _arrow3830)
209
209
 
210
210
  elif match_value.tag == 0:
211
211
  wb: Any = match_value.fields[0]
212
212
  path_1: str = combine(base_path, c.Path)
213
- def _arrow3831(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
214
- def _arrow3829(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
213
+ def _arrow3832(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
214
+ def _arrow3831(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
215
215
  return singleton.Return(FSharpResult_2(0, c))
216
216
 
217
- return singleton.Bind(write_file_xlsx_async(path_1, wb), _arrow3829)
217
+ return singleton.Bind(write_file_xlsx_async(path_1, wb), _arrow3831)
218
218
 
219
- return singleton.Bind(ensure_directory_of_file_async(path_1), _arrow3831)
219
+ return singleton.Bind(ensure_directory_of_file_async(path_1), _arrow3832)
220
220
 
221
221
  else:
222
222
  return singleton.Return(FSharpResult_2(1, to_text(printf("Contract %s is not an ISA contract"))(c.Path)))
@@ -10,7 +10,7 @@ from ..ontology_annotation import OntologyAnnotation
10
10
  from .material_attribute_value import (MaterialAttributeValue, MaterialAttributeValue_reflection)
11
11
  from .material_type import (MaterialType as MaterialType_1, MaterialType__get_AsString, MaterialType_reflection)
12
12
 
13
- def _expr591() -> TypeInfo:
13
+ def _expr590() -> TypeInfo:
14
14
  return record_type("ARCtrl.Process.Material", [], Material, lambda: [("ID", option_type(string_type)), ("Name", option_type(string_type)), ("MaterialType", option_type(MaterialType_reflection())), ("Characteristics", option_type(list_type(MaterialAttributeValue_reflection()))), ("DerivesFrom", option_type(list_type(Material_reflection())))])
15
15
 
16
16
 
@@ -41,7 +41,7 @@ class Material(Record):
41
41
 
42
42
 
43
43
 
44
- Material_reflection = _expr591
44
+ Material_reflection = _expr590
45
45
 
46
46
  def Material_make(id: str | None=None, name: str | None=None, material_type: MaterialType_1 | None=None, characteristics: FSharpList[MaterialAttributeValue] | None=None, derives_from: FSharpList[Material] | None=None) -> Material:
47
47
  return Material(id, name, material_type, characteristics, derives_from)
@@ -154,11 +154,11 @@ def MaterialAttributeValue__MapCategory_658CFBF6(this: MaterialAttributeValue, f
154
154
 
155
155
 
156
156
  def MaterialAttributeValue__SetCategory_ZDED3A0F(this: MaterialAttributeValue, c: OntologyAnnotation) -> MaterialAttributeValue:
157
- def _arrow590(__unit: None=None, this: Any=this, c: Any=c) -> MaterialAttribute | None:
157
+ def _arrow591(__unit: None=None, this: Any=this, c: Any=c) -> MaterialAttribute | None:
158
158
  match_value: MaterialAttribute | None = this.Category
159
159
  return MaterialAttribute_create_A220A8A(None, c) if (match_value is None) else MaterialAttribute__SetCategory_ZDED3A0F(match_value, c)
160
160
 
161
- return MaterialAttributeValue(this.ID, _arrow590(), this.Value, this.Unit)
161
+ return MaterialAttributeValue(this.ID, _arrow591(), this.Value, this.Unit)
162
162
 
163
163
 
164
164
  def MaterialAttributeValue_tryGetNameText_Z772273B8(mv: MaterialAttributeValue) -> str | None:
@@ -442,7 +442,7 @@ def Process_getSamples_763471FF(p: Process) -> FSharpList[Sample]:
442
442
  def chooser_1(po: ProcessOutput, p: Any=p) -> Sample | None:
443
443
  return ProcessOutput_trySample_Z42C11600(po)
444
444
 
445
- class ObjectExpr616:
445
+ class ObjectExpr620:
446
446
  @property
447
447
  def Equals(self) -> Callable[[Sample, Sample], bool]:
448
448
  return equals
@@ -451,7 +451,7 @@ def Process_getSamples_763471FF(p: Process) -> FSharpList[Sample]:
451
451
  def GetHashCode(self) -> Callable[[Sample], int]:
452
452
  return safe_hash
453
453
 
454
- return List_distinct(append(choose(chooser, default_arg(p.Inputs, empty())), choose(chooser_1, default_arg(p.Outputs, empty()))), ObjectExpr616())
454
+ return List_distinct(append(choose(chooser, default_arg(p.Inputs, empty())), choose(chooser_1, default_arg(p.Outputs, empty()))), ObjectExpr620())
455
455
 
456
456
 
457
457
  def Process_getMaterials_763471FF(p: Process) -> FSharpList[Material]:
@@ -461,7 +461,7 @@ def Process_getMaterials_763471FF(p: Process) -> FSharpList[Material]:
461
461
  def chooser_1(po: ProcessOutput, p: Any=p) -> Material | None:
462
462
  return ProcessOutput_tryMaterial_Z42C11600(po)
463
463
 
464
- class ObjectExpr617:
464
+ class ObjectExpr623:
465
465
  @property
466
466
  def Equals(self) -> Callable[[Material, Material], bool]:
467
467
  return equals
@@ -470,7 +470,7 @@ def Process_getMaterials_763471FF(p: Process) -> FSharpList[Material]:
470
470
  def GetHashCode(self) -> Callable[[Material], int]:
471
471
  return safe_hash
472
472
 
473
- return List_distinct(append(choose(chooser, default_arg(p.Inputs, empty())), choose(chooser_1, default_arg(p.Outputs, empty()))), ObjectExpr617())
473
+ return List_distinct(append(choose(chooser, default_arg(p.Inputs, empty())), choose(chooser_1, default_arg(p.Outputs, empty()))), ObjectExpr623())
474
474
 
475
475
 
476
476
  __all__ = ["Process_reflection", "Process_make", "Process_create_Z7C1F7FA9", "Process_get_empty", "Process_composeName", "Process_decomposeName_Z721C83C5", "Process_tryGetProtocolName_763471FF", "Process_getProtocolName_763471FF", "Process_getParameterValues_763471FF", "Process_getParameters_763471FF", "Process_getInputCharacteristicValues_763471FF", "Process_getOutputCharacteristicValues_763471FF", "Process_getCharacteristicValues_763471FF", "Process_getCharacteristics_763471FF", "Process_getFactorValues_763471FF", "Process_getFactors_763471FF", "Process_getUnits_763471FF", "Process_tryGetInputsWithParameterBy", "Process_tryGetOutputsWithParameterBy", "Process_tryGetInputsWithCharacteristicBy", "Process_tryGetOutputsWithCharacteristicBy", "Process_tryGetOutputsWithFactorBy", "Process_getSources_763471FF", "Process_getData_763471FF", "Process_getSamples_763471FF", "Process_getMaterials_763471FF"]
@@ -30,26 +30,26 @@ def get_protocol_names(process_sequence: FSharpList[Process]) -> FSharpList[str]
30
30
 
31
31
  return bind(binder, p.ExecutesProtocol)
32
32
 
33
- class ObjectExpr619:
33
+ class ObjectExpr617:
34
34
  @property
35
35
  def Equals(self) -> Callable[[str, str], bool]:
36
- def _arrow618(x: str, y: str) -> bool:
36
+ def _arrow616(x: str, y: str) -> bool:
37
37
  return x == y
38
38
 
39
- return _arrow618
39
+ return _arrow616
40
40
 
41
41
  @property
42
42
  def GetHashCode(self) -> Callable[[str], int]:
43
43
  return string_hash
44
44
 
45
- return List_distinct(choose(chooser, process_sequence), ObjectExpr619())
45
+ return List_distinct(choose(chooser, process_sequence), ObjectExpr617())
46
46
 
47
47
 
48
48
  def get_protocols(process_sequence: FSharpList[Process]) -> FSharpList[Protocol]:
49
49
  def chooser(p: Process, process_sequence: Any=process_sequence) -> Protocol | None:
50
50
  return p.ExecutesProtocol
51
51
 
52
- class ObjectExpr620:
52
+ class ObjectExpr618:
53
53
  @property
54
54
  def Equals(self) -> Callable[[Protocol, Protocol], bool]:
55
55
  return equals
@@ -58,7 +58,7 @@ def get_protocols(process_sequence: FSharpList[Process]) -> FSharpList[Protocol]
58
58
  def GetHashCode(self) -> Callable[[Protocol], int]:
59
59
  return safe_hash
60
60
 
61
- return List_distinct(choose(chooser, process_sequence), ObjectExpr620())
61
+ return List_distinct(choose(chooser, process_sequence), ObjectExpr618())
62
62
 
63
63
 
64
64
  def filter_by_protocol_by(predicate: Callable[[Protocol], bool], process_sequence: FSharpList[Process]) -> FSharpList[Process]:
@@ -87,10 +87,10 @@ def filter_by_protocol_by(predicate: Callable[[Protocol], bool], process_sequenc
87
87
 
88
88
 
89
89
  def filter_by_protocol_name(protocol_name: str, process_sequence: FSharpList[Process]) -> FSharpList[Process]:
90
- def _arrow621(p: Protocol, protocol_name: Any=protocol_name, process_sequence: Any=process_sequence) -> bool:
90
+ def _arrow619(p: Protocol, protocol_name: Any=protocol_name, process_sequence: Any=process_sequence) -> bool:
91
91
  return equals(p.Name, protocol_name)
92
92
 
93
- return filter_by_protocol_by(_arrow621, process_sequence)
93
+ return filter_by_protocol_by(_arrow619, process_sequence)
94
94
 
95
95
 
96
96
  def get_inputs_with_parameter_by(predicate: Callable[[ProtocolParameter], bool], process_sequence: FSharpList[Process]) -> FSharpList[tuple[ProcessInput, ProcessParameterValue]]:
@@ -111,7 +111,7 @@ def get_parameters(process_sequence: FSharpList[Process]) -> FSharpList[Protocol
111
111
  def mapping(p: Process, process_sequence: Any=process_sequence) -> FSharpList[ProtocolParameter]:
112
112
  return Process_getParameters_763471FF(p)
113
113
 
114
- class ObjectExpr622:
114
+ class ObjectExpr621:
115
115
  @property
116
116
  def Equals(self) -> Callable[[ProtocolParameter, ProtocolParameter], bool]:
117
117
  return equals
@@ -120,14 +120,14 @@ def get_parameters(process_sequence: FSharpList[Process]) -> FSharpList[Protocol
120
120
  def GetHashCode(self) -> Callable[[ProtocolParameter], int]:
121
121
  return safe_hash
122
122
 
123
- return List_distinct(collect(mapping, process_sequence), ObjectExpr622())
123
+ return List_distinct(collect(mapping, process_sequence), ObjectExpr621())
124
124
 
125
125
 
126
126
  def get_characteristics(process_sequence: FSharpList[Process]) -> FSharpList[MaterialAttribute]:
127
127
  def mapping(p: Process, process_sequence: Any=process_sequence) -> FSharpList[MaterialAttribute]:
128
128
  return Process_getCharacteristics_763471FF(p)
129
129
 
130
- class ObjectExpr623:
130
+ class ObjectExpr622:
131
131
  @property
132
132
  def Equals(self) -> Callable[[MaterialAttribute, MaterialAttribute], bool]:
133
133
  return equals
@@ -136,7 +136,7 @@ def get_characteristics(process_sequence: FSharpList[Process]) -> FSharpList[Mat
136
136
  def GetHashCode(self) -> Callable[[MaterialAttribute], int]:
137
137
  return safe_hash
138
138
 
139
- return List_distinct(collect(mapping, process_sequence), ObjectExpr623())
139
+ return List_distinct(collect(mapping, process_sequence), ObjectExpr622())
140
140
 
141
141
 
142
142
  def get_inputs_with_characteristic_by(predicate: Callable[[MaterialAttribute], bool], process_sequence: FSharpList[Process]) -> FSharpList[tuple[ProcessInput, MaterialAttributeValue]]: