arctrl 3.0.0b1__tar.gz → 3.0.0b3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (456) hide show
  1. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/PKG-INFO +1 -1
  2. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/pyproject.toml +1 -1
  3. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/__init__.py +2 -0
  4. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/outputs.py +4 -4
  5. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/requirements.py +8 -8
  6. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/tool_description.py +2 -2
  7. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/workflow_description.py +2 -2
  8. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ContractIO/contract_io.py +2 -2
  9. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/component.py +2 -2
  10. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/protocol_parameter.py +2 -2
  11. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/arc_table.py +47 -47
  12. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/arc_tables.py +39 -39
  13. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/composite_cell.py +2 -2
  14. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/composite_column.py +4 -4
  15. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/composite_header.py +4 -4
  16. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/arc_types.py +491 -491
  17. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/conversion.py +98 -98
  18. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/data.py +9 -7
  19. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/file_system_tree.py +62 -27
  20. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/DataMap/data_context.py +22 -22
  21. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/DataMap/data_map.py +6 -6
  22. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/factor.py +19 -19
  23. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/factor_value.py +18 -18
  24. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/process.py +33 -33
  25. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/process_input.py +10 -10
  26. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/protocol_parameter.py +13 -13
  27. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/sample.py +10 -10
  28. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/ROCrate/ldref.py +10 -10
  29. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/arc_table.py +61 -61
  30. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/cell_table.py +8 -8
  31. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
  32. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/oatable.py +10 -10
  33. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/templates.py +62 -62
  34. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/context/rocrate/rocrate_context.py +4 -4
  35. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/converter_options.py +2 -2
  36. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/data_file.py +8 -8
  37. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/decode.py +6 -6
  38. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/encode.py +14 -14
  39. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/investigation.py +75 -75
  40. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/person.py +59 -59
  41. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/property_value.py +37 -37
  42. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/publication.py +19 -19
  43. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/study.py +61 -61
  44. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ROCrate/Generic/dataset.py +2 -2
  45. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ROCrate/Generic/organization.py +2 -2
  46. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ROCrate/Generic/postal_address.py +2 -2
  47. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ROCrate/ISAProfile/sample.py +2 -2
  48. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/assays.py +8 -8
  49. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/contacts.py +10 -10
  50. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_annotation.py +8 -8
  51. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/protocols.py +9 -9
  52. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/publication.py +10 -10
  53. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/sparse_table.py +32 -32
  54. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/study.py +32 -32
  55. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Spreadsheet/Metadata/workflow.py +6 -6
  56. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/WebRequest/web_request_py.py +2 -2
  57. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/arc.py +195 -192
  58. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/conversion.py +143 -107
  59. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +10 -10
  60. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +6 -6
  61. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/cell.py +8 -8
  62. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/row.py +6 -6
  63. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +23 -23
  64. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +2 -2
  65. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +2 -2
  66. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +2 -2
  67. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +26 -26
  68. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_python/decode.py +4 -4
  69. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_python/encode.py +2 -2
  70. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/decode.py +20 -20
  71. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/json.py +54 -2
  72. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/rocrate_io.py +23 -9
  73. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/xlsx.py +10 -10
  74. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/LICENSE +0 -0
  75. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/README.md +0 -0
  76. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/__init__.py +0 -0
  77. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/cwltypes.py +0 -0
  78. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/decode.py +0 -0
  79. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/encode.py +0 -0
  80. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/inputs.py +0 -0
  81. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/CWL/workflow_steps.py +0 -0
  82. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/__init__.py +0 -0
  83. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/arc.py +0 -0
  84. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/arc_assay.py +0 -0
  85. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/arc_investigation.py +0 -0
  86. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/arc_run.py +0 -0
  87. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/arc_study.py +0 -0
  88. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/arc_workflow.py +0 -0
  89. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/contract.py +0 -0
  90. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/datamap.py +0 -0
  91. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/git.py +0 -0
  92. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Contract/validation_packages_config.py +0 -0
  93. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ContractIO/__init__.py +0 -0
  94. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/ContractIO/file_system_helper.py +0 -0
  95. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/__init__.py +0 -0
  96. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/collections_.py +0 -0
  97. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/date_time.py +0 -0
  98. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/hash_codes.py +0 -0
  99. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/identifier.py +0 -0
  100. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/orcid.py +0 -0
  101. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/printer.py +0 -0
  102. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/regex.py +0 -0
  103. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/sem_ver.py +0 -0
  104. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Helper/url.py +0 -0
  105. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/__init__.py +0 -0
  106. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/column_index.py +0 -0
  107. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/factor.py +0 -0
  108. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/factor_value.py +0 -0
  109. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/material.py +0 -0
  110. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/material_attribute.py +0 -0
  111. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/material_attribute_value.py +0 -0
  112. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/material_type.py +0 -0
  113. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/process.py +0 -0
  114. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/process_input.py +0 -0
  115. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/process_output.py +0 -0
  116. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/process_parameter_value.py +0 -0
  117. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/process_sequence.py +0 -0
  118. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/protocol.py +0 -0
  119. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/sample.py +0 -0
  120. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Process/source.py +0 -0
  121. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/__init__.py +0 -0
  122. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/Table/arc_table_aux.py +0 -0
  123. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/__init__.py +0 -0
  124. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/comment.py +0 -0
  125. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/comment_list.py +0 -0
  126. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/data_context.py +0 -0
  127. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/data_file.py +0 -0
  128. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/data_map.py +0 -0
  129. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/identifier_setters.py +0 -0
  130. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/iproperty_value.py +0 -0
  131. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/ontology_annotation.py +0 -0
  132. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/ontology_source_reference.py +0 -0
  133. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/person.py +0 -0
  134. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/publication.py +0 -0
  135. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/template.py +0 -0
  136. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/templates.py +0 -0
  137. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/uri.py +0 -0
  138. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Core/value.py +0 -0
  139. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/__init__.py +0 -0
  140. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/commit.py +0 -0
  141. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/default_gitattributes.py +0 -0
  142. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/default_gitignore.py +0 -0
  143. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/file_system.py +0 -0
  144. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/FileSystem/path.py +0 -0
  145. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/DataMap/__init__.py +0 -0
  146. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/__init__.py +0 -0
  147. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/assay_materials.py +0 -0
  148. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/component.py +0 -0
  149. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/material.py +0 -0
  150. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/material_attribute.py +0 -0
  151. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/material_attribute_value.py +0 -0
  152. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/material_type.py +0 -0
  153. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/process_output.py +0 -0
  154. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/process_parameter_value.py +0 -0
  155. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/protocol.py +0 -0
  156. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/source.py +0 -0
  157. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/study_materials.py +0 -0
  158. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Process/value.py +0 -0
  159. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/ROCrate/__init__.py +0 -0
  160. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/ROCrate/ldcontext.py +0 -0
  161. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/ROCrate/ldgraph.py +0 -0
  162. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/ROCrate/ldnode.py +0 -0
  163. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/ROCrate/ldvalue.py +0 -0
  164. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/__init__.py +0 -0
  165. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/composite_cell.py +0 -0
  166. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/Table/composite_header.py +0 -0
  167. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/__init__.py +0 -0
  168. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/assay.py +0 -0
  169. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/comment.py +0 -0
  170. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/context/rocrate/__init__.py +0 -0
  171. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/Json/context/rocrate/isa_assay_context.py +0 -0
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  347. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/observable.py +0 -0
  348. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/option.py +0 -0
  349. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/path.py +0 -0
  350. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/range.py +0 -0
  351. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/reflection.py +0 -0
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  357. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/set.py +0 -0
  358. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/singleton_local_time_zone.py +0 -0
  359. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/string_.py +0 -0
  360. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/system_collections_generic.py +0 -0
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  368. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/uri.py +0 -0
  369. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_library/util.py +0 -0
  370. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  371. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_openpyxl/openpyxl.py +0 -0
  372. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
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  374. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  375. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/flask/flask.py +0 -0
  376. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  377. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +0 -0
  378. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/jupyter/ipython.py +0 -0
  379. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  380. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/ast.py +0 -0
  381. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  382. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +0 -0
  383. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +0 -0
  384. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +0 -0
  385. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/base64_.py +0 -0
  386. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/builtins_.py +0 -0
  387. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/html.py +0 -0
  388. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/json.py +0 -0
  389. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/math_.py +0 -0
  390. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/os_.py +0 -0
  391. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/queue_.py +0 -0
  392. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/string_.py +0 -0
  393. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/sys_.py +0 -0
  394. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/time_.py +0 -0
  395. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fable_python/stdlib/tk_inter.py +0 -0
  396. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  397. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +0 -0
  398. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  399. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +0 -0
  400. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +0 -0
  401. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +0 -0
  402. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +0 -0
  403. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +0 -0
  404. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +0 -0
  405. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +0 -0
  406. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +0 -0
  407. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/types.py +0 -0
  408. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +0 -0
  409. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  410. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/column.py +0 -0
  411. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/table.py +0 -0
  412. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/value.py +0 -0
  413. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +0 -0
  414. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  415. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +0 -0
  416. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +0 -0
  417. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  418. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +0 -0
  419. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +0 -0
  420. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +0 -0
  421. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  422. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_address.py +0 -0
  423. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_column.py +0 -0
  424. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_row.py +0 -0
  425. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +0 -0
  426. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +0 -0
  427. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  428. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/cell.py +0 -0
  429. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +0 -0
  430. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +0 -0
  431. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/json.py +0 -0
  432. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/table.py +0 -0
  433. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/workbook.py +0 -0
  434. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +0 -0
  435. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +0 -0
  436. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  437. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_core/decode.py +0 -0
  438. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_core/encode.py +0 -0
  439. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_core/types.py +0 -0
  440. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  441. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/thoth_json_python/python.py +0 -0
  442. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  443. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/Interop/js_interop.py +0 -0
  444. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/Interop/py_interop.py +0 -0
  445. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/__init__.py +0 -0
  446. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/encode.py +0 -0
  447. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/library.py +0 -0
  448. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/persil.py +0 -0
  449. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/preprocessing.py +0 -0
  450. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/reader.py +0 -0
  451. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/regex.py +0 -0
  452. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/regex_active_patterns.py +0 -0
  453. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/writer.py +0 -0
  454. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/fable_modules/yamlicious/yamlicious_types.py +0 -0
  455. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/py/template_web.py +0 -0
  456. {arctrl-3.0.0b1 → arctrl-3.0.0b3}/src/ARCtrl/rocrate.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: arctrl
3
- Version: 3.0.0b1
3
+ Version: 3.0.0b3
4
4
  Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
5
5
  Keywords: arc,annotated research context,isa,research data,multi platform
6
6
  Author: Heinrich Lukas Weil
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "arctrl"
3
- version = "3.0.0b1"
3
+ version = "3.0.0b3"
4
4
  description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
5
5
  authors = [
6
6
  { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
@@ -13,6 +13,8 @@ from .py.Core.Table.arc_table import ArcTable
13
13
  from .py.Core.Table.arc_tables import ArcTables
14
14
  from .py.Core.arc_types import ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation
15
15
  from .py.Core.template import Template
16
+ from .py.FileSystem.file_system import FileSystem
17
+ from .py.FileSystem.file_system_tree import FileSystemTree
16
18
  from .py.json import JsonController
17
19
  from .py.xlsx import XlsxController
18
20
  from .py.arc import ARC
@@ -8,7 +8,7 @@ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, opt
8
8
  from ..fable_modules.fable_library.types import (Record, FSharpRef)
9
9
  from .cwltypes import CWLType
10
10
 
11
- def _expr3177() -> TypeInfo:
11
+ def _expr3186() -> TypeInfo:
12
12
  return record_type("ARCtrl.CWL.OutputBinding", [], OutputBinding, lambda: [("Glob", option_type(string_type))])
13
13
 
14
14
 
@@ -16,9 +16,9 @@ def _expr3177() -> TypeInfo:
16
16
  class OutputBinding(Record):
17
17
  Glob: str | None
18
18
 
19
- OutputBinding_reflection = _expr3177
19
+ OutputBinding_reflection = _expr3186
20
20
 
21
- def _expr3179() -> TypeInfo:
21
+ def _expr3187() -> TypeInfo:
22
22
  return class_type("ARCtrl.CWL.CWLOutput", None, CWLOutput, DynamicObj_reflection())
23
23
 
24
24
 
@@ -75,7 +75,7 @@ class CWLOutput(DynamicObj):
75
75
 
76
76
 
77
77
 
78
- CWLOutput_reflection = _expr3179
78
+ CWLOutput_reflection = _expr3187
79
79
 
80
80
  def CWLOutput__ctor_744035D(name: str, type_: CWLType | None=None, output_binding: OutputBinding | None=None, output_source: str | None=None) -> CWLOutput:
81
81
  return CWLOutput(name, type_, output_binding, output_source)
@@ -7,7 +7,7 @@ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, opt
7
7
  from ..fable_modules.fable_library.types import (Record, FSharpRef, Array, Union)
8
8
  from .cwltypes import (SchemaDefRequirementType_reflection, SoftwarePackage_reflection, CWLType_reflection)
9
9
 
10
- def _expr3125() -> TypeInfo:
10
+ def _expr3146() -> TypeInfo:
11
11
  return record_type("ARCtrl.CWL.DockerRequirement", [], DockerRequirement, lambda: [("DockerPull", option_type(string_type)), ("DockerFile", option_type(class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, string_type]))), ("DockerImageId", option_type(string_type))])
12
12
 
13
13
 
@@ -17,9 +17,9 @@ class DockerRequirement(Record):
17
17
  DockerFile: Any | None
18
18
  DockerImageId: str | None
19
19
 
20
- DockerRequirement_reflection = _expr3125
20
+ DockerRequirement_reflection = _expr3146
21
21
 
22
- def _expr3131() -> TypeInfo:
22
+ def _expr3149() -> TypeInfo:
23
23
  return record_type("ARCtrl.CWL.EnvironmentDef", [], EnvironmentDef, lambda: [("EnvName", string_type), ("EnvValue", string_type)])
24
24
 
25
25
 
@@ -28,9 +28,9 @@ class EnvironmentDef(Record):
28
28
  EnvName: str
29
29
  EnvValue: str
30
30
 
31
- EnvironmentDef_reflection = _expr3131
31
+ EnvironmentDef_reflection = _expr3149
32
32
 
33
- def _expr3134() -> TypeInfo:
33
+ def _expr3157() -> TypeInfo:
34
34
  return class_type("ARCtrl.CWL.ResourceRequirementInstance", None, ResourceRequirementInstance, DynamicObj_reflection())
35
35
 
36
36
 
@@ -50,13 +50,13 @@ class ResourceRequirementInstance(DynamicObj):
50
50
  set_optional_property("outdirMax", outdir_max, this.contents)
51
51
 
52
52
 
53
- ResourceRequirementInstance_reflection = _expr3134
53
+ ResourceRequirementInstance_reflection = _expr3157
54
54
 
55
55
  def ResourceRequirementInstance__ctor_D76FC00(cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> ResourceRequirementInstance:
56
56
  return ResourceRequirementInstance(cores_min, cores_max, ram_min, ram_max, tmpdir_min, tmpdir_max, outdir_min, outdir_max)
57
57
 
58
58
 
59
- def _expr3136() -> TypeInfo:
59
+ def _expr3162() -> TypeInfo:
60
60
  return union_type("ARCtrl.CWL.Requirement", [], Requirement, lambda: [[], [("Item", array_type(SchemaDefRequirementType_reflection()))], [("Item", DockerRequirement_reflection())], [("Item", array_type(SoftwarePackage_reflection()))], [("Item", array_type(CWLType_reflection()))], [("Item", array_type(EnvironmentDef_reflection()))], [], [("Item", ResourceRequirementInstance_reflection())], [], [], [], [("Item", float64_type)], [], [], [], []])
61
61
 
62
62
 
@@ -71,7 +71,7 @@ class Requirement(Union):
71
71
  return ["InlineJavascriptRequirement", "SchemaDefRequirement", "DockerRequirement", "SoftwareRequirement", "InitialWorkDirRequirement", "EnvVarRequirement", "ShellCommandRequirement", "ResourceRequirement", "WorkReuseRequirement", "NetworkAccessRequirement", "InplaceUpdateRequirement", "ToolTimeLimitRequirement", "SubworkflowFeatureRequirement", "ScatterFeatureRequirement", "MultipleInputFeatureRequirement", "StepInputExpressionRequirement"]
72
72
 
73
73
 
74
- Requirement_reflection = _expr3136
74
+ Requirement_reflection = _expr3162
75
75
 
76
76
  __all__ = ["DockerRequirement_reflection", "EnvironmentDef_reflection", "ResourceRequirementInstance_reflection", "Requirement_reflection"]
77
77
 
@@ -7,7 +7,7 @@ from .inputs import CWLInput
7
7
  from .outputs import CWLOutput
8
8
  from .requirements import Requirement
9
9
 
10
- def _expr3255() -> TypeInfo:
10
+ def _expr3289() -> TypeInfo:
11
11
  return class_type("ARCtrl.CWL.CWLToolDescription", None, CWLToolDescription, DynamicObj_reflection())
12
12
 
13
13
 
@@ -93,7 +93,7 @@ class CWLToolDescription(DynamicObj):
93
93
  this._metadata = metadata
94
94
 
95
95
 
96
- CWLToolDescription_reflection = _expr3255
96
+ CWLToolDescription_reflection = _expr3289
97
97
 
98
98
  def CWLToolDescription__ctor_Z3224DB85(outputs: Array[CWLOutput], cwl_version: str | None=None, base_command: Array[str] | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, inputs: Array[CWLInput] | None=None, metadata: DynamicObj | None=None) -> CWLToolDescription:
99
99
  return CWLToolDescription(outputs, cwl_version, base_command, requirements, hints, inputs, metadata)
@@ -8,7 +8,7 @@ from .outputs import CWLOutput
8
8
  from .requirements import Requirement
9
9
  from .workflow_steps import WorkflowStep
10
10
 
11
- def _expr3321() -> TypeInfo:
11
+ def _expr3341() -> TypeInfo:
12
12
  return class_type("ARCtrl.CWL.CWLWorkflowDescription", None, CWLWorkflowDescription, DynamicObj_reflection())
13
13
 
14
14
 
@@ -94,7 +94,7 @@ class CWLWorkflowDescription(DynamicObj):
94
94
  this._metadata = metadata
95
95
 
96
96
 
97
- CWLWorkflowDescription_reflection = _expr3321
97
+ CWLWorkflowDescription_reflection = _expr3341
98
98
 
99
99
  def CWLWorkflowDescription__ctor_704BBD06(steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> CWLWorkflowDescription:
100
100
  return CWLWorkflowDescription(steps, inputs, outputs, cwl_version, requirements, hints, metadata)
@@ -15,11 +15,11 @@ from .file_system_helper import (read_file_xlsx_async, read_file_text_async, ens
15
15
 
16
16
  def fulfill_read_contract_async(base_path: str, c: Contract) -> Async[FSharpResult_2[Contract, str]]:
17
17
  def f(e_1: Exception, base_path: Any=base_path, c: Any=c) -> FSharpResult_2[Contract, str]:
18
- def _arrow3645(__unit: None=None, e_1: Any=e_1) -> str:
18
+ def _arrow3644(__unit: None=None, e_1: Any=e_1) -> str:
19
19
  arg_4: str = str(e_1)
20
20
  return to_text(printf("Error reading contract %s: %s"))(c.Path)(arg_4)
21
21
 
22
- return FSharpResult_2(1, _arrow3645())
22
+ return FSharpResult_2(1, _arrow3644())
23
23
 
24
24
  def _arrow3651(__unit: None=None, base_path: Any=base_path, c: Any=c) -> Async[FSharpResult_2[Contract, str]]:
25
25
  def _arrow3648(__unit: None=None) -> Async[FSharpResult_2[Contract, str]]:
@@ -13,7 +13,7 @@ from ..Helper.regex import ActivePatterns__007CRegex_007C__007C
13
13
  from ..ontology_annotation import (OntologyAnnotation, OntologyAnnotation_reflection)
14
14
  from ..value import (Value, Value_reflection)
15
15
 
16
- def _expr581() -> TypeInfo:
16
+ def _expr580() -> TypeInfo:
17
17
  return record_type("ARCtrl.Process.Component", [], Component, lambda: [("ComponentValue", option_type(Value_reflection())), ("ComponentUnit", option_type(OntologyAnnotation_reflection())), ("ComponentType", option_type(OntologyAnnotation_reflection()))])
18
18
 
19
19
 
@@ -48,7 +48,7 @@ class Component(Record):
48
48
  return this.ComponentUnit
49
49
 
50
50
 
51
- Component_reflection = _expr581
51
+ Component_reflection = _expr580
52
52
 
53
53
  def Component__get_ComponentName(this: Component) -> str | None:
54
54
  def mapping(v: Value, this: Any=this) -> str:
@@ -9,7 +9,7 @@ from ..comment import Comment
9
9
  from ..Helper.collections_ import Option_fromValueWithDefault
10
10
  from ..ontology_annotation import (OntologyAnnotation, OntologyAnnotation_reflection)
11
11
 
12
- def _expr580() -> TypeInfo:
12
+ def _expr581() -> TypeInfo:
13
13
  return record_type("ARCtrl.Process.ProtocolParameter", [], ProtocolParameter, lambda: [("ID", option_type(string_type)), ("ParameterName", option_type(OntologyAnnotation_reflection()))])
14
14
 
15
15
 
@@ -92,7 +92,7 @@ class ProtocolParameter(Record):
92
92
  return "OA " + this.NameText
93
93
 
94
94
 
95
- ProtocolParameter_reflection = _expr580
95
+ ProtocolParameter_reflection = _expr581
96
96
 
97
97
  __all__ = ["ProtocolParameter_reflection"]
98
98
 
@@ -109,10 +109,10 @@ class ArcTable:
109
109
 
110
110
  @staticmethod
111
111
  def validate(raise_exception: bool | None=None) -> Callable[[ArcTable], bool]:
112
- def _arrow711(table: ArcTable) -> bool:
112
+ def _arrow726(table: ArcTable) -> bool:
113
113
  return table.Validate(raise_exception)
114
114
 
115
- return _arrow711
115
+ return _arrow726
116
116
 
117
117
  @property
118
118
  def ColumnCount(self, __unit: None=None) -> int:
@@ -139,23 +139,23 @@ class ArcTable:
139
139
 
140
140
  @staticmethod
141
141
  def set_row_count(new_row_count: int) -> Callable[[ArcTable], ArcTable]:
142
- def _arrow712(table: ArcTable) -> ArcTable:
142
+ def _arrow727(table: ArcTable) -> ArcTable:
143
143
  new_table: ArcTable = table.Copy()
144
144
  new_table.RowCount = new_row_count or 0
145
145
  return new_table
146
146
 
147
- return _arrow712
147
+ return _arrow727
148
148
 
149
149
  @property
150
150
  def Columns(self, __unit: None=None) -> Array[CompositeColumn]:
151
151
  this: ArcTable = self
152
- def _arrow714(__unit: None=None) -> IEnumerable_1[CompositeColumn]:
153
- def _arrow713(i: int) -> CompositeColumn:
152
+ def _arrow729(__unit: None=None) -> IEnumerable_1[CompositeColumn]:
153
+ def _arrow728(i: int) -> CompositeColumn:
154
154
  return this.GetColumn(i)
155
155
 
156
- return map(_arrow713, range_big_int(0, 1, this.ColumnCount - 1))
156
+ return map(_arrow728, range_big_int(0, 1, this.ColumnCount - 1))
157
157
 
158
- return list(to_array(delay(_arrow714)))
158
+ return list(to_array(delay(_arrow729)))
159
159
 
160
160
  def Copy(self, __unit: None=None) -> ArcTable:
161
161
  this: ArcTable = self
@@ -172,10 +172,10 @@ class ArcTable:
172
172
 
173
173
  @staticmethod
174
174
  def try_get_cell_at(column: int, row: int) -> Callable[[ArcTable], CompositeCell | None]:
175
- def _arrow722(table: ArcTable) -> CompositeCell | None:
175
+ def _arrow731(table: ArcTable) -> CompositeCell | None:
176
176
  return table.TryGetCellAt(column, row)
177
177
 
178
- return _arrow722
178
+ return _arrow731
179
179
 
180
180
  def GetCellAt(self, column: int, row: int) -> CompositeCell:
181
181
  this: ArcTable = self
@@ -185,10 +185,10 @@ class ArcTable:
185
185
 
186
186
  @staticmethod
187
187
  def get_cell_at(column: int, row: int) -> Callable[[ArcTable], CompositeCell]:
188
- def _arrow723(table: ArcTable) -> CompositeCell:
188
+ def _arrow732(table: ArcTable) -> CompositeCell:
189
189
  return table.GetCellAt(column, row)
190
190
 
191
- return _arrow723
191
+ return _arrow732
192
192
 
193
193
  def IterColumns(self, action: Callable[[CompositeColumn], None]) -> None:
194
194
  this: ArcTable = self
@@ -197,12 +197,12 @@ class ArcTable:
197
197
 
198
198
  @staticmethod
199
199
  def iter_columns(action: Callable[[CompositeColumn], None]) -> Callable[[ArcTable], ArcTable]:
200
- def _arrow724(table: ArcTable) -> ArcTable:
200
+ def _arrow733(table: ArcTable) -> ArcTable:
201
201
  copy: ArcTable = table.Copy()
202
202
  copy.IterColumns(action)
203
203
  return copy
204
204
 
205
- return _arrow724
205
+ return _arrow733
206
206
 
207
207
  def IteriColumns(self, action: Callable[[int, CompositeColumn], None]) -> None:
208
208
  this: ArcTable = self
@@ -211,12 +211,12 @@ class ArcTable:
211
211
 
212
212
  @staticmethod
213
213
  def iteri_columns(action: Callable[[int, CompositeColumn], None]) -> Callable[[ArcTable], ArcTable]:
214
- def _arrow727(table: ArcTable) -> ArcTable:
214
+ def _arrow736(table: ArcTable) -> ArcTable:
215
215
  copy: ArcTable = table.Copy()
216
216
  copy.IteriColumns(action)
217
217
  return copy
218
218
 
219
- return _arrow727
219
+ return _arrow736
220
220
 
221
221
  def UpdateCellAt(self, column_index: int, row_index: int, c: CompositeCell, skip_validation: bool | None=None) -> None:
222
222
  this: ArcTable = self
@@ -229,12 +229,12 @@ class ArcTable:
229
229
 
230
230
  @staticmethod
231
231
  def update_cell_at(column_index: int, row_index: int, cell: CompositeCell, skip_validation: bool | None=None) -> Callable[[ArcTable], ArcTable]:
232
- def _arrow728(table: ArcTable) -> ArcTable:
232
+ def _arrow737(table: ArcTable) -> ArcTable:
233
233
  new_table: ArcTable = table.Copy()
234
234
  new_table.UpdateCellAt(column_index, row_index, cell, skip_validation)
235
235
  return new_table
236
236
 
237
- return _arrow728
237
+ return _arrow737
238
238
 
239
239
  def SetCellAt(self, column_index: int, row_index: int, c: CompositeCell, skip_validation: bool | None=None) -> None:
240
240
  this: ArcTable = self
@@ -246,12 +246,12 @@ class ArcTable:
246
246
 
247
247
  @staticmethod
248
248
  def set_cell_at(column_index: int, row_index: int, cell: CompositeCell, skip_validation: bool | None=None) -> Callable[[ArcTable], ArcTable]:
249
- def _arrow729(table: ArcTable) -> ArcTable:
249
+ def _arrow739(table: ArcTable) -> ArcTable:
250
250
  new_table: ArcTable = table.Copy()
251
251
  new_table.SetCellAt(column_index, row_index, cell, skip_validation)
252
252
  return new_table
253
253
 
254
- return _arrow729
254
+ return _arrow739
255
255
 
256
256
  def UpdateCellsBy(self, f: Callable[[int, int, CompositeCell], CompositeCell], skip_validation: bool | None=None) -> None:
257
257
  this: ArcTable = self
@@ -270,11 +270,11 @@ class ArcTable:
270
270
 
271
271
  @staticmethod
272
272
  def update_cells_by(f: Callable[[int, int, CompositeCell], CompositeCell], skip_validation: bool | None=None) -> Callable[[ArcTable], None]:
273
- def _arrow730(table: ArcTable) -> None:
273
+ def _arrow741(table: ArcTable) -> None:
274
274
  new_table: ArcTable = table.Copy()
275
275
  new_table.UpdateCellsBy(f, skip_validation)
276
276
 
277
- return _arrow730
277
+ return _arrow741
278
278
 
279
279
  def UpdateCellBy(self, column_index: int, row_index: int, f: Callable[[CompositeCell], CompositeCell], skip_validation: bool | None=None) -> None:
280
280
  this: ArcTable = self
@@ -291,11 +291,11 @@ class ArcTable:
291
291
 
292
292
  @staticmethod
293
293
  def update_cell_by(column_index: int, row_index: int, f: Callable[[CompositeCell], CompositeCell], skip_validation: bool | None=None) -> Callable[[ArcTable], None]:
294
- def _arrow732(table: ArcTable) -> None:
294
+ def _arrow742(table: ArcTable) -> None:
295
295
  new_table: ArcTable = table.Copy()
296
296
  new_table.UpdateCellBy(column_index, row_index, f, skip_validation)
297
297
 
298
- return _arrow732
298
+ return _arrow742
299
299
 
300
300
  def UpdateHeader(self, index: int, new_header: CompositeHeader, force_convert_cells: bool | None=None) -> None:
301
301
  this: ArcTable = self
@@ -332,12 +332,12 @@ class ArcTable:
332
332
 
333
333
  @staticmethod
334
334
  def update_header(index: int, header: CompositeHeader) -> Callable[[ArcTable], ArcTable]:
335
- def _arrow735(table: ArcTable) -> ArcTable:
335
+ def _arrow743(table: ArcTable) -> ArcTable:
336
336
  new_table: ArcTable = table.Copy()
337
337
  new_table.UpdateHeader(index, header)
338
338
  return new_table
339
339
 
340
- return _arrow735
340
+ return _arrow743
341
341
 
342
342
  def AddColumn(self, header: CompositeHeader, cells: Array[CompositeCell] | None=None, index: int | None=None, force_replace: bool | None=None) -> None:
343
343
  this: ArcTable = self
@@ -350,12 +350,12 @@ class ArcTable:
350
350
 
351
351
  @staticmethod
352
352
  def add_column(header: CompositeHeader, cells: Array[CompositeCell] | None=None, index: int | None=None, force_replace: bool | None=None) -> Callable[[ArcTable], ArcTable]:
353
- def _arrow736(table: ArcTable) -> ArcTable:
353
+ def _arrow744(table: ArcTable) -> ArcTable:
354
354
  new_table: ArcTable = table.Copy()
355
355
  new_table.AddColumn(header, cells, index, force_replace)
356
356
  return new_table
357
357
 
358
- return _arrow736
358
+ return _arrow744
359
359
 
360
360
  def AddColumnFill(self, header: CompositeHeader, cell: CompositeCell, index: int | None=None, force_replace: bool | None=None) -> None:
361
361
  this: ArcTable = self
@@ -367,12 +367,12 @@ class ArcTable:
367
367
 
368
368
  @staticmethod
369
369
  def add_column_fill(header: CompositeHeader, cell: CompositeCell, index: int | None=None, force_replace: bool | None=None) -> Callable[[ArcTable], ArcTable]:
370
- def _arrow739(table: ArcTable) -> ArcTable:
370
+ def _arrow745(table: ArcTable) -> ArcTable:
371
371
  new_table: ArcTable = table.Copy()
372
372
  new_table.AddColumnFill(header, cell, index, force_replace)
373
373
  return new_table
374
374
 
375
- return _arrow739
375
+ return _arrow745
376
376
 
377
377
  def UpdateColumn(self, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
378
378
  this: ArcTable = self
@@ -394,12 +394,12 @@ class ArcTable:
394
394
 
395
395
  @staticmethod
396
396
  def update_column(column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
397
- def _arrow741(table: ArcTable) -> ArcTable:
397
+ def _arrow746(table: ArcTable) -> ArcTable:
398
398
  new_table: ArcTable = table.Copy()
399
399
  new_table.UpdateColumn(column_index, header, cells)
400
400
  return new_table
401
401
 
402
- return _arrow741
402
+ return _arrow746
403
403
 
404
404
  def InsertColumn(self, index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
405
405
  this: ArcTable = self
@@ -407,12 +407,12 @@ class ArcTable:
407
407
 
408
408
  @staticmethod
409
409
  def insert_column(index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
410
- def _arrow742(table: ArcTable) -> ArcTable:
410
+ def _arrow747(table: ArcTable) -> ArcTable:
411
411
  new_table: ArcTable = table.Copy()
412
412
  new_table.InsertColumn(index, header, cells)
413
413
  return new_table
414
414
 
415
- return _arrow742
415
+ return _arrow747
416
416
 
417
417
  def AppendColumn(self, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
418
418
  this: ArcTable = self
@@ -420,12 +420,12 @@ class ArcTable:
420
420
 
421
421
  @staticmethod
422
422
  def append_column(header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
423
- def _arrow744(table: ArcTable) -> ArcTable:
423
+ def _arrow748(table: ArcTable) -> ArcTable:
424
424
  new_table: ArcTable = table.Copy()
425
425
  new_table.AppendColumn(header, cells)
426
426
  return new_table
427
427
 
428
- return _arrow744
428
+ return _arrow748
429
429
 
430
430
  def AddColumns(self, columns: IEnumerable_1[CompositeColumn], index: int | None=None, force_replace: bool | None=None) -> None:
431
431
  this: ArcTable = self
@@ -461,12 +461,12 @@ class ArcTable:
461
461
 
462
462
  @staticmethod
463
463
  def add_columns(columns: Array[CompositeColumn], index: int | None=None) -> Callable[[ArcTable], ArcTable]:
464
- def _arrow747(table: ArcTable) -> ArcTable:
464
+ def _arrow749(table: ArcTable) -> ArcTable:
465
465
  new_table: ArcTable = table.Copy()
466
466
  new_table.AddColumns(columns, index)
467
467
  return new_table
468
468
 
469
- return _arrow747
469
+ return _arrow749
470
470
 
471
471
  def RemoveColumn(self, index: int) -> None:
472
472
  this: ArcTable = self
@@ -477,37 +477,37 @@ class ArcTable:
477
477
 
478
478
  @staticmethod
479
479
  def remove_column(index: int) -> Callable[[ArcTable], ArcTable]:
480
- def _arrow748(table: ArcTable) -> ArcTable:
480
+ def _arrow750(table: ArcTable) -> ArcTable:
481
481
  new_table: ArcTable = table.Copy()
482
482
  new_table.RemoveColumn(index)
483
483
  return new_table
484
484
 
485
- return _arrow748
485
+ return _arrow750
486
486
 
487
487
  def RemoveColumns(self, index_arr: Array[int]) -> None:
488
488
  this: ArcTable = self
489
- def _arrow749(index: int) -> None:
489
+ def _arrow751(index: int) -> None:
490
490
  SanityChecks_validateColumnIndex(index, this.ColumnCount, False)
491
491
 
492
- iterate_2(_arrow749, index_arr)
493
- def _arrow750(index_1: int) -> None:
492
+ iterate_2(_arrow751, index_arr)
493
+ def _arrow752(index_1: int) -> None:
494
494
  this.RemoveColumn(index_1)
495
495
 
496
- class ObjectExpr751:
496
+ class ObjectExpr753:
497
497
  @property
498
498
  def Compare(self) -> Callable[[int, int], int]:
499
499
  return compare_primitives
500
500
 
501
- iterate_2(_arrow750, sort_descending(index_arr, ObjectExpr751()))
501
+ iterate_2(_arrow752, sort_descending(index_arr, ObjectExpr753()))
502
502
 
503
503
  @staticmethod
504
504
  def remove_columns(index_arr: Array[int]) -> Callable[[ArcTable], ArcTable]:
505
- def _arrow752(table: ArcTable) -> ArcTable:
505
+ def _arrow754(table: ArcTable) -> ArcTable:
506
506
  new_table: ArcTable = table.Copy()
507
507
  new_table.RemoveColumns(index_arr)
508
508
  return new_table
509
509
 
510
- return _arrow752
510
+ return _arrow754
511
511
 
512
512
  def GetColumn(self, column_index: int, fill_default: bool | None=None) -> CompositeColumn:
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  this: ArcTable = self