arctrl 3.0.0b1__tar.gz → 3.0.0b2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (456) hide show
  1. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/PKG-INFO +1 -1
  2. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/pyproject.toml +1 -1
  3. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/outputs.py +4 -4
  4. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/requirements.py +8 -8
  5. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/tool_description.py +2 -2
  6. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/workflow_description.py +2 -2
  7. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/arc_table.py +25 -25
  8. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/arc_tables.py +27 -27
  9. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/arc_types.py +213 -213
  10. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/conversion.py +22 -22
  11. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data.py +9 -7
  12. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/file_system_tree.py +6 -6
  13. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/DataMap/data_context.py +24 -24
  14. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/DataMap/data_map.py +6 -6
  15. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/factor.py +19 -19
  16. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/factor_value.py +18 -18
  17. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process.py +24 -24
  18. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process_input.py +4 -4
  19. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process_output.py +8 -8
  20. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/protocol_parameter.py +13 -13
  21. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/sample.py +32 -32
  22. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldref.py +10 -10
  23. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/arc_table.py +83 -83
  24. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/cell_table.py +6 -6
  25. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
  26. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/oatable.py +10 -10
  27. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/templates.py +65 -65
  28. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_context.py +12 -12
  29. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +12 -12
  30. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/rocrate_context.py +2 -2
  31. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/converter_options.py +2 -2
  32. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/data_file.py +8 -8
  33. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/decode.py +4 -4
  34. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/encode.py +10 -10
  35. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/investigation.py +77 -77
  36. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/person.py +51 -51
  37. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/property_value.py +6 -6
  38. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/publication.py +21 -21
  39. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/study.py +108 -108
  40. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/JsonIO/comment.py +6 -6
  41. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/assays.py +8 -8
  42. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/contacts.py +8 -8
  43. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_annotation.py +2 -2
  44. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/protocols.py +9 -9
  45. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/publication.py +10 -10
  46. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/study.py +32 -32
  47. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/arc.py +193 -190
  48. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/column_index.py +9 -9
  49. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +2 -2
  50. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +2 -2
  51. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +6 -6
  52. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/types.py +2 -2
  53. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +2 -2
  54. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/cell.py +8 -8
  55. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/row.py +6 -6
  56. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +21 -21
  57. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +2 -2
  58. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +2 -2
  59. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_column.py +2 -2
  60. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +6 -6
  61. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +2 -2
  62. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_python/decode.py +4 -4
  63. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_python/encode.py +2 -2
  64. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/decode.py +20 -20
  65. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/json.py +54 -2
  66. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/rocrate_io.py +18 -5
  67. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/xlsx.py +10 -10
  68. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/LICENSE +0 -0
  69. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/README.md +0 -0
  70. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/__init__.py +0 -0
  71. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/__init__.py +0 -0
  72. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/cwltypes.py +0 -0
  73. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/decode.py +0 -0
  74. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/encode.py +0 -0
  75. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/inputs.py +0 -0
  76. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/workflow_steps.py +0 -0
  77. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/__init__.py +0 -0
  78. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc.py +0 -0
  79. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_assay.py +0 -0
  80. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_investigation.py +0 -0
  81. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_run.py +0 -0
  82. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_study.py +0 -0
  83. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_workflow.py +0 -0
  84. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/contract.py +0 -0
  85. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/datamap.py +0 -0
  86. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/git.py +0 -0
  87. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/validation_packages_config.py +0 -0
  88. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/ContractIO/__init__.py +0 -0
  89. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/ContractIO/contract_io.py +0 -0
  90. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/ContractIO/file_system_helper.py +0 -0
  91. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/__init__.py +0 -0
  92. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/collections_.py +0 -0
  93. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/date_time.py +0 -0
  94. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/hash_codes.py +0 -0
  95. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/identifier.py +0 -0
  96. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/orcid.py +0 -0
  97. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/printer.py +0 -0
  98. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/regex.py +0 -0
  99. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/sem_ver.py +0 -0
  100. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/url.py +0 -0
  101. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/__init__.py +0 -0
  102. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/column_index.py +0 -0
  103. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/component.py +0 -0
  104. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/factor.py +0 -0
  105. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/factor_value.py +0 -0
  106. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material.py +0 -0
  107. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material_attribute.py +0 -0
  108. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material_attribute_value.py +0 -0
  109. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material_type.py +0 -0
  110. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process.py +0 -0
  111. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_input.py +0 -0
  112. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_output.py +0 -0
  113. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_parameter_value.py +0 -0
  114. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_sequence.py +0 -0
  115. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/protocol.py +0 -0
  116. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/protocol_parameter.py +0 -0
  117. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/sample.py +0 -0
  118. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/source.py +0 -0
  119. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/__init__.py +0 -0
  120. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/arc_table_aux.py +0 -0
  121. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/composite_cell.py +0 -0
  122. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/composite_column.py +0 -0
  123. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/composite_header.py +0 -0
  124. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/__init__.py +0 -0
  125. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/comment.py +0 -0
  126. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/comment_list.py +0 -0
  127. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data_context.py +0 -0
  128. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data_file.py +0 -0
  129. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data_map.py +0 -0
  130. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/identifier_setters.py +0 -0
  131. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/iproperty_value.py +0 -0
  132. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/ontology_annotation.py +0 -0
  133. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/ontology_source_reference.py +0 -0
  134. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/person.py +0 -0
  135. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/publication.py +0 -0
  136. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/template.py +0 -0
  137. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/templates.py +0 -0
  138. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/uri.py +0 -0
  139. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/value.py +0 -0
  140. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/__init__.py +0 -0
  141. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/commit.py +0 -0
  142. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/default_gitattributes.py +0 -0
  143. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/default_gitignore.py +0 -0
  144. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/file_system.py +0 -0
  145. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/path.py +0 -0
  146. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/DataMap/__init__.py +0 -0
  147. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/__init__.py +0 -0
  148. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/assay_materials.py +0 -0
  149. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/component.py +0 -0
  150. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material.py +0 -0
  151. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material_attribute.py +0 -0
  152. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material_attribute_value.py +0 -0
  153. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material_type.py +0 -0
  154. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process_parameter_value.py +0 -0
  155. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/protocol.py +0 -0
  156. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/source.py +0 -0
  157. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/study_materials.py +0 -0
  158. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/value.py +0 -0
  159. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/__init__.py +0 -0
  160. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldcontext.py +0 -0
  161. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldgraph.py +0 -0
  162. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldnode.py +0 -0
  163. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldvalue.py +0 -0
  164. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/__init__.py +0 -0
  165. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/composite_cell.py +0 -0
  166. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/composite_header.py +0 -0
  167. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/__init__.py +0 -0
  168. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/assay.py +0 -0
  169. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/comment.py +0 -0
  170. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/__init__.py +0 -0
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  333. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/double.py +0 -0
  334. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/encoding.py +0 -0
  335. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/event.py +0 -0
  336. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/file.py +0 -0
  337. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/fsharp_collections.py +0 -0
  338. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/fsharp_core.py +0 -0
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  340. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/guid.py +0 -0
  341. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/int32.py +0 -0
  342. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/list.py +0 -0
  343. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/long.py +0 -0
  344. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/mailbox_processor.py +0 -0
  345. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/map.py +0 -0
  346. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/map_util.py +0 -0
  347. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/mutable_map.py +0 -0
  348. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/mutable_set.py +0 -0
  349. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/native.py +0 -0
  350. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/numeric.py +0 -0
  351. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/observable.py +0 -0
  352. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/option.py +0 -0
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  354. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/range.py +0 -0
  355. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/reflection.py +0 -0
  356. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/reg_exp.py +0 -0
  357. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/resize_array.py +0 -0
  358. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/result.py +0 -0
  359. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/seq.py +0 -0
  360. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/seq2.py +0 -0
  361. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/set.py +0 -0
  362. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/singleton_local_time_zone.py +0 -0
  363. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/string_.py +0 -0
  364. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/system_collections_generic.py +0 -0
  365. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/system_text.py +0 -0
  366. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/task.py +0 -0
  367. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/task_builder.py +0 -0
  368. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/thread.py +0 -0
  369. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/time_span.py +0 -0
  370. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/timer.py +0 -0
  371. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/types.py +0 -0
  372. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/uri.py +0 -0
  373. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_library/util.py +0 -0
  374. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_openpyxl/__init__.py +0 -0
  375. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_openpyxl/openpyxl.py +0 -0
  376. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/cognite-sdk/__init__.py +0 -0
  377. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/cognite-sdk/cognite_sdk.py +0 -0
  378. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/flask/__init__.py +0 -0
  379. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/flask/flask.py +0 -0
  380. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/jupyter/__init__.py +0 -0
  381. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/jupyter/ipy_widgets.py +0 -0
  382. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/jupyter/ipython.py +0 -0
  383. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/__init__.py +0 -0
  384. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/ast.py +0 -0
  385. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/__init__.py +0 -0
  386. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/events.py +0 -0
  387. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/futures.py +0 -0
  388. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/asyncio/tasks.py +0 -0
  389. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/base64_.py +0 -0
  390. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/builtins_.py +0 -0
  391. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/html.py +0 -0
  392. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/json.py +0 -0
  393. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/math_.py +0 -0
  394. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/os_.py +0 -0
  395. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/queue_.py +0 -0
  396. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/string_.py +0 -0
  397. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/sys_.py +0 -0
  398. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/time_.py +0 -0
  399. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fable_python/stdlib/tk_inter.py +0 -0
  400. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/__init__.py +0 -0
  401. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cell.py +0 -0
  402. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/__init__.py +0 -0
  403. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/cell_builder.py +0 -0
  404. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/column_builder.py +0 -0
  405. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/operators.py +0 -0
  406. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/row_builder.py +0 -0
  407. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/sheet_builder.py +0 -0
  408. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/table_builder.py +0 -0
  409. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/transform.py +0 -0
  410. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/__init__.py +0 -0
  411. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/column.py +0 -0
  412. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/table.py +0 -0
  413. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/value.py +0 -0
  414. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/workbook.py +0 -0
  415. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/__init__.py +0 -0
  416. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range.py +0 -0
  417. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_base.py +0 -0
  418. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_column.py +0 -0
  419. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_row.py +0 -0
  420. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/__init__.py +0 -0
  421. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table.py +0 -0
  422. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_field.py +0 -0
  423. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/__init__.py +0 -0
  424. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_address.py +0 -0
  425. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_row.py +0 -0
  426. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_workbook.py +0 -0
  427. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/__init__.py +0 -0
  428. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/cell.py +0 -0
  429. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/cell_type.py +0 -0
  430. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/fs_extension.py +0 -0
  431. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/json.py +0 -0
  432. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/table.py +0 -0
  433. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/workbook.py +0 -0
  434. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/worksheet.py +0 -0
  435. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet_py/xlsx.py +0 -0
  436. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_core/__init__.py +0 -0
  437. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_core/decode.py +0 -0
  438. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_core/encode.py +0 -0
  439. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_core/types.py +0 -0
  440. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_python/__init__.py +0 -0
  441. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_python/python.py +0 -0
  442. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/Interop/__init__.py +0 -0
  443. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/Interop/js_interop.py +0 -0
  444. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/Interop/py_interop.py +0 -0
  445. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/__init__.py +0 -0
  446. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/encode.py +0 -0
  447. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/library.py +0 -0
  448. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/persil.py +0 -0
  449. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/preprocessing.py +0 -0
  450. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/reader.py +0 -0
  451. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/regex.py +0 -0
  452. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/regex_active_patterns.py +0 -0
  453. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/writer.py +0 -0
  454. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/yamlicious_types.py +0 -0
  455. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/template_web.py +0 -0
  456. {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/rocrate.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: arctrl
3
- Version: 3.0.0b1
3
+ Version: 3.0.0b2
4
4
  Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
5
5
  Keywords: arc,annotated research context,isa,research data,multi platform
6
6
  Author: Heinrich Lukas Weil
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "arctrl"
3
- version = "3.0.0b1"
3
+ version = "3.0.0b2"
4
4
  description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
5
5
  authors = [
6
6
  { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
@@ -8,7 +8,7 @@ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, opt
8
8
  from ..fable_modules.fable_library.types import (Record, FSharpRef)
9
9
  from .cwltypes import CWLType
10
10
 
11
- def _expr3177() -> TypeInfo:
11
+ def _expr3147() -> TypeInfo:
12
12
  return record_type("ARCtrl.CWL.OutputBinding", [], OutputBinding, lambda: [("Glob", option_type(string_type))])
13
13
 
14
14
 
@@ -16,9 +16,9 @@ def _expr3177() -> TypeInfo:
16
16
  class OutputBinding(Record):
17
17
  Glob: str | None
18
18
 
19
- OutputBinding_reflection = _expr3177
19
+ OutputBinding_reflection = _expr3147
20
20
 
21
- def _expr3179() -> TypeInfo:
21
+ def _expr3151() -> TypeInfo:
22
22
  return class_type("ARCtrl.CWL.CWLOutput", None, CWLOutput, DynamicObj_reflection())
23
23
 
24
24
 
@@ -75,7 +75,7 @@ class CWLOutput(DynamicObj):
75
75
 
76
76
 
77
77
 
78
- CWLOutput_reflection = _expr3179
78
+ CWLOutput_reflection = _expr3151
79
79
 
80
80
  def CWLOutput__ctor_744035D(name: str, type_: CWLType | None=None, output_binding: OutputBinding | None=None, output_source: str | None=None) -> CWLOutput:
81
81
  return CWLOutput(name, type_, output_binding, output_source)
@@ -7,7 +7,7 @@ from ..fable_modules.fable_library.reflection import (TypeInfo, string_type, opt
7
7
  from ..fable_modules.fable_library.types import (Record, FSharpRef, Array, Union)
8
8
  from .cwltypes import (SchemaDefRequirementType_reflection, SoftwarePackage_reflection, CWLType_reflection)
9
9
 
10
- def _expr3125() -> TypeInfo:
10
+ def _expr3086() -> TypeInfo:
11
11
  return record_type("ARCtrl.CWL.DockerRequirement", [], DockerRequirement, lambda: [("DockerPull", option_type(string_type)), ("DockerFile", option_type(class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, string_type]))), ("DockerImageId", option_type(string_type))])
12
12
 
13
13
 
@@ -17,9 +17,9 @@ class DockerRequirement(Record):
17
17
  DockerFile: Any | None
18
18
  DockerImageId: str | None
19
19
 
20
- DockerRequirement_reflection = _expr3125
20
+ DockerRequirement_reflection = _expr3086
21
21
 
22
- def _expr3131() -> TypeInfo:
22
+ def _expr3090() -> TypeInfo:
23
23
  return record_type("ARCtrl.CWL.EnvironmentDef", [], EnvironmentDef, lambda: [("EnvName", string_type), ("EnvValue", string_type)])
24
24
 
25
25
 
@@ -28,9 +28,9 @@ class EnvironmentDef(Record):
28
28
  EnvName: str
29
29
  EnvValue: str
30
30
 
31
- EnvironmentDef_reflection = _expr3131
31
+ EnvironmentDef_reflection = _expr3090
32
32
 
33
- def _expr3134() -> TypeInfo:
33
+ def _expr3093() -> TypeInfo:
34
34
  return class_type("ARCtrl.CWL.ResourceRequirementInstance", None, ResourceRequirementInstance, DynamicObj_reflection())
35
35
 
36
36
 
@@ -50,13 +50,13 @@ class ResourceRequirementInstance(DynamicObj):
50
50
  set_optional_property("outdirMax", outdir_max, this.contents)
51
51
 
52
52
 
53
- ResourceRequirementInstance_reflection = _expr3134
53
+ ResourceRequirementInstance_reflection = _expr3093
54
54
 
55
55
  def ResourceRequirementInstance__ctor_D76FC00(cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> ResourceRequirementInstance:
56
56
  return ResourceRequirementInstance(cores_min, cores_max, ram_min, ram_max, tmpdir_min, tmpdir_max, outdir_min, outdir_max)
57
57
 
58
58
 
59
- def _expr3136() -> TypeInfo:
59
+ def _expr3097() -> TypeInfo:
60
60
  return union_type("ARCtrl.CWL.Requirement", [], Requirement, lambda: [[], [("Item", array_type(SchemaDefRequirementType_reflection()))], [("Item", DockerRequirement_reflection())], [("Item", array_type(SoftwarePackage_reflection()))], [("Item", array_type(CWLType_reflection()))], [("Item", array_type(EnvironmentDef_reflection()))], [], [("Item", ResourceRequirementInstance_reflection())], [], [], [], [("Item", float64_type)], [], [], [], []])
61
61
 
62
62
 
@@ -71,7 +71,7 @@ class Requirement(Union):
71
71
  return ["InlineJavascriptRequirement", "SchemaDefRequirement", "DockerRequirement", "SoftwareRequirement", "InitialWorkDirRequirement", "EnvVarRequirement", "ShellCommandRequirement", "ResourceRequirement", "WorkReuseRequirement", "NetworkAccessRequirement", "InplaceUpdateRequirement", "ToolTimeLimitRequirement", "SubworkflowFeatureRequirement", "ScatterFeatureRequirement", "MultipleInputFeatureRequirement", "StepInputExpressionRequirement"]
72
72
 
73
73
 
74
- Requirement_reflection = _expr3136
74
+ Requirement_reflection = _expr3097
75
75
 
76
76
  __all__ = ["DockerRequirement_reflection", "EnvironmentDef_reflection", "ResourceRequirementInstance_reflection", "Requirement_reflection"]
77
77
 
@@ -7,7 +7,7 @@ from .inputs import CWLInput
7
7
  from .outputs import CWLOutput
8
8
  from .requirements import Requirement
9
9
 
10
- def _expr3255() -> TypeInfo:
10
+ def _expr3256() -> TypeInfo:
11
11
  return class_type("ARCtrl.CWL.CWLToolDescription", None, CWLToolDescription, DynamicObj_reflection())
12
12
 
13
13
 
@@ -93,7 +93,7 @@ class CWLToolDescription(DynamicObj):
93
93
  this._metadata = metadata
94
94
 
95
95
 
96
- CWLToolDescription_reflection = _expr3255
96
+ CWLToolDescription_reflection = _expr3256
97
97
 
98
98
  def CWLToolDescription__ctor_Z3224DB85(outputs: Array[CWLOutput], cwl_version: str | None=None, base_command: Array[str] | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, inputs: Array[CWLInput] | None=None, metadata: DynamicObj | None=None) -> CWLToolDescription:
99
99
  return CWLToolDescription(outputs, cwl_version, base_command, requirements, hints, inputs, metadata)
@@ -8,7 +8,7 @@ from .outputs import CWLOutput
8
8
  from .requirements import Requirement
9
9
  from .workflow_steps import WorkflowStep
10
10
 
11
- def _expr3321() -> TypeInfo:
11
+ def _expr3267() -> TypeInfo:
12
12
  return class_type("ARCtrl.CWL.CWLWorkflowDescription", None, CWLWorkflowDescription, DynamicObj_reflection())
13
13
 
14
14
 
@@ -94,7 +94,7 @@ class CWLWorkflowDescription(DynamicObj):
94
94
  this._metadata = metadata
95
95
 
96
96
 
97
- CWLWorkflowDescription_reflection = _expr3321
97
+ CWLWorkflowDescription_reflection = _expr3267
98
98
 
99
99
  def CWLWorkflowDescription__ctor_704BBD06(steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> CWLWorkflowDescription:
100
100
  return CWLWorkflowDescription(steps, inputs, outputs, cwl_version, requirements, hints, metadata)
@@ -172,10 +172,10 @@ class ArcTable:
172
172
 
173
173
  @staticmethod
174
174
  def try_get_cell_at(column: int, row: int) -> Callable[[ArcTable], CompositeCell | None]:
175
- def _arrow722(table: ArcTable) -> CompositeCell | None:
175
+ def _arrow718(table: ArcTable) -> CompositeCell | None:
176
176
  return table.TryGetCellAt(column, row)
177
177
 
178
- return _arrow722
178
+ return _arrow718
179
179
 
180
180
  def GetCellAt(self, column: int, row: int) -> CompositeCell:
181
181
  this: ArcTable = self
@@ -291,11 +291,11 @@ class ArcTable:
291
291
 
292
292
  @staticmethod
293
293
  def update_cell_by(column_index: int, row_index: int, f: Callable[[CompositeCell], CompositeCell], skip_validation: bool | None=None) -> Callable[[ArcTable], None]:
294
- def _arrow732(table: ArcTable) -> None:
294
+ def _arrow731(table: ArcTable) -> None:
295
295
  new_table: ArcTable = table.Copy()
296
296
  new_table.UpdateCellBy(column_index, row_index, f, skip_validation)
297
297
 
298
- return _arrow732
298
+ return _arrow731
299
299
 
300
300
  def UpdateHeader(self, index: int, new_header: CompositeHeader, force_convert_cells: bool | None=None) -> None:
301
301
  this: ArcTable = self
@@ -332,12 +332,12 @@ class ArcTable:
332
332
 
333
333
  @staticmethod
334
334
  def update_header(index: int, header: CompositeHeader) -> Callable[[ArcTable], ArcTable]:
335
- def _arrow735(table: ArcTable) -> ArcTable:
335
+ def _arrow734(table: ArcTable) -> ArcTable:
336
336
  new_table: ArcTable = table.Copy()
337
337
  new_table.UpdateHeader(index, header)
338
338
  return new_table
339
339
 
340
- return _arrow735
340
+ return _arrow734
341
341
 
342
342
  def AddColumn(self, header: CompositeHeader, cells: Array[CompositeCell] | None=None, index: int | None=None, force_replace: bool | None=None) -> None:
343
343
  this: ArcTable = self
@@ -367,12 +367,12 @@ class ArcTable:
367
367
 
368
368
  @staticmethod
369
369
  def add_column_fill(header: CompositeHeader, cell: CompositeCell, index: int | None=None, force_replace: bool | None=None) -> Callable[[ArcTable], ArcTable]:
370
- def _arrow739(table: ArcTable) -> ArcTable:
370
+ def _arrow737(table: ArcTable) -> ArcTable:
371
371
  new_table: ArcTable = table.Copy()
372
372
  new_table.AddColumnFill(header, cell, index, force_replace)
373
373
  return new_table
374
374
 
375
- return _arrow739
375
+ return _arrow737
376
376
 
377
377
  def UpdateColumn(self, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
378
378
  this: ArcTable = self
@@ -394,12 +394,12 @@ class ArcTable:
394
394
 
395
395
  @staticmethod
396
396
  def update_column(column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
397
- def _arrow741(table: ArcTable) -> ArcTable:
397
+ def _arrow739(table: ArcTable) -> ArcTable:
398
398
  new_table: ArcTable = table.Copy()
399
399
  new_table.UpdateColumn(column_index, header, cells)
400
400
  return new_table
401
401
 
402
- return _arrow741
402
+ return _arrow739
403
403
 
404
404
  def InsertColumn(self, index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
405
405
  this: ArcTable = self
@@ -420,12 +420,12 @@ class ArcTable:
420
420
 
421
421
  @staticmethod
422
422
  def append_column(header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
423
- def _arrow744(table: ArcTable) -> ArcTable:
423
+ def _arrow743(table: ArcTable) -> ArcTable:
424
424
  new_table: ArcTable = table.Copy()
425
425
  new_table.AppendColumn(header, cells)
426
426
  return new_table
427
427
 
428
- return _arrow744
428
+ return _arrow743
429
429
 
430
430
  def AddColumns(self, columns: IEnumerable_1[CompositeColumn], index: int | None=None, force_replace: bool | None=None) -> None:
431
431
  this: ArcTable = self
@@ -461,12 +461,12 @@ class ArcTable:
461
461
 
462
462
  @staticmethod
463
463
  def add_columns(columns: Array[CompositeColumn], index: int | None=None) -> Callable[[ArcTable], ArcTable]:
464
- def _arrow747(table: ArcTable) -> ArcTable:
464
+ def _arrow745(table: ArcTable) -> ArcTable:
465
465
  new_table: ArcTable = table.Copy()
466
466
  new_table.AddColumns(columns, index)
467
467
  return new_table
468
468
 
469
- return _arrow747
469
+ return _arrow745
470
470
 
471
471
  def RemoveColumn(self, index: int) -> None:
472
472
  this: ArcTable = self
@@ -477,28 +477,28 @@ class ArcTable:
477
477
 
478
478
  @staticmethod
479
479
  def remove_column(index: int) -> Callable[[ArcTable], ArcTable]:
480
- def _arrow748(table: ArcTable) -> ArcTable:
480
+ def _arrow746(table: ArcTable) -> ArcTable:
481
481
  new_table: ArcTable = table.Copy()
482
482
  new_table.RemoveColumn(index)
483
483
  return new_table
484
484
 
485
- return _arrow748
485
+ return _arrow746
486
486
 
487
487
  def RemoveColumns(self, index_arr: Array[int]) -> None:
488
488
  this: ArcTable = self
489
- def _arrow749(index: int) -> None:
489
+ def _arrow747(index: int) -> None:
490
490
  SanityChecks_validateColumnIndex(index, this.ColumnCount, False)
491
491
 
492
- iterate_2(_arrow749, index_arr)
493
- def _arrow750(index_1: int) -> None:
492
+ iterate_2(_arrow747, index_arr)
493
+ def _arrow748(index_1: int) -> None:
494
494
  this.RemoveColumn(index_1)
495
495
 
496
- class ObjectExpr751:
496
+ class ObjectExpr750:
497
497
  @property
498
498
  def Compare(self) -> Callable[[int, int], int]:
499
499
  return compare_primitives
500
500
 
501
- iterate_2(_arrow750, sort_descending(index_arr, ObjectExpr751()))
501
+ iterate_2(_arrow748, sort_descending(index_arr, ObjectExpr750()))
502
502
 
503
503
  @staticmethod
504
504
  def remove_columns(index_arr: Array[int]) -> Callable[[ArcTable], ArcTable]:
@@ -541,10 +541,10 @@ class ArcTable:
541
541
 
542
542
  @staticmethod
543
543
  def get_column(index: int, fill_default: bool | None=None) -> Callable[[ArcTable], CompositeColumn]:
544
- def _arrow755(table: ArcTable) -> CompositeColumn:
544
+ def _arrow753(table: ArcTable) -> CompositeColumn:
545
545
  return table.GetColumn(index, fill_default)
546
546
 
547
- return _arrow755
547
+ return _arrow753
548
548
 
549
549
  def TryGetColumnByHeader(self, header: CompositeHeader, fill_default: bool | None=None) -> CompositeColumn | None:
550
550
  this: ArcTable = self
@@ -558,10 +558,10 @@ class ArcTable:
558
558
 
559
559
  @staticmethod
560
560
  def try_get_column_by_header(header: CompositeHeader, fill_default: bool | None=None) -> Callable[[ArcTable], CompositeColumn | None]:
561
- def _arrow756(table: ArcTable) -> CompositeColumn | None:
561
+ def _arrow754(table: ArcTable) -> CompositeColumn | None:
562
562
  return table.TryGetColumnByHeader(header, fill_default)
563
563
 
564
- return _arrow756
564
+ return _arrow754
565
565
 
566
566
  def TryGetColumnByHeaderBy(self, header_predicate: Callable[[CompositeHeader], bool], fill_default: bool | None=None) -> CompositeColumn | None:
567
567
  this: ArcTable = self
@@ -178,10 +178,10 @@ def ArcTablesAux_SanityChecks_validateNamesUnique(names: IEnumerable_1[str]) ->
178
178
 
179
179
 
180
180
  def ArcTablesAux_SanityChecks_validateNewNameUnique(new_name: str, existing_names: IEnumerable_1[str]) -> None:
181
- def _arrow718(x: str, new_name: Any=new_name, existing_names: Any=existing_names) -> bool:
181
+ def _arrow719(x: str, new_name: Any=new_name, existing_names: Any=existing_names) -> bool:
182
182
  return x == new_name
183
183
 
184
- match_value: int | None = try_find_index(_arrow718, existing_names)
184
+ match_value: int | None = try_find_index(_arrow719, existing_names)
185
185
  if match_value is None:
186
186
  pass
187
187
 
@@ -191,10 +191,10 @@ def ArcTablesAux_SanityChecks_validateNewNameUnique(new_name: str, existing_name
191
191
 
192
192
 
193
193
  def ArcTablesAux_SanityChecks_validateNewNameAtUnique(index: int, new_name: str, existing_names: IEnumerable_1[str]) -> None:
194
- def _arrow719(x: str, index: Any=index, new_name: Any=new_name, existing_names: Any=existing_names) -> bool:
194
+ def _arrow720(x: str, index: Any=index, new_name: Any=new_name, existing_names: Any=existing_names) -> bool:
195
195
  return x == new_name
196
196
 
197
- match_value: int | None = try_find_index(_arrow719, existing_names)
197
+ match_value: int | None = try_find_index(_arrow720, existing_names)
198
198
  if match_value is None:
199
199
  pass
200
200
 
@@ -209,36 +209,36 @@ def ArcTablesAux_SanityChecks_validateNewNameAtUnique(index: int, new_name: str,
209
209
 
210
210
  def ArcTablesAux_SanityChecks_validateNewNamesUnique(new_names: IEnumerable_1[str], existing_names: IEnumerable_1[str]) -> None:
211
211
  ArcTablesAux_SanityChecks_validateNamesUnique(new_names)
212
- class ObjectExpr720:
212
+ class ObjectExpr721:
213
213
  @property
214
214
  def Compare(self) -> Callable[[str, str], int]:
215
215
  return compare_primitives
216
216
 
217
- class ObjectExpr721:
217
+ class ObjectExpr722:
218
218
  @property
219
219
  def Compare(self) -> Callable[[str, str], int]:
220
220
  return compare_primitives
221
221
 
222
- same: Any = intersect(of_seq(new_names, ObjectExpr720()), of_seq(existing_names, ObjectExpr721()))
222
+ same: Any = intersect(of_seq(new_names, ObjectExpr721()), of_seq(existing_names, ObjectExpr722()))
223
223
  if not FSharpSet__get_IsEmpty(same):
224
224
  raise Exception(("Cannot create tables with the names " + str(same)) + ", as table names must be unique.")
225
225
 
226
226
 
227
227
 
228
- def _expr754() -> TypeInfo:
228
+ def _expr756() -> TypeInfo:
229
229
  return class_type("ARCtrl.ArcTables", None, ArcTables)
230
230
 
231
231
 
232
232
  class ArcTables:
233
233
  def __init__(self, init_tables: Array[ArcTable]) -> None:
234
- def _expr753():
234
+ def _expr755():
235
235
  def mapping(t: ArcTable) -> str:
236
236
  return t.Name
237
237
 
238
238
  ArcTablesAux_SanityChecks_validateNamesUnique(map_1(mapping, init_tables))
239
239
  return init_tables
240
240
 
241
- self.tables: Array[ArcTable] = _expr753()
241
+ self.tables: Array[ArcTable] = _expr755()
242
242
 
243
243
  @property
244
244
  def Tables(self, __unit: None=None) -> Array[ArcTable]:
@@ -382,10 +382,10 @@ class ArcTables:
382
382
 
383
383
  def AddColumnAt(self, table_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None, column_index: int | None=None, force_replace: bool | None=None) -> None:
384
384
  this: ArcTables = self
385
- def _arrow731(table: ArcTable) -> None:
385
+ def _arrow732(table: ArcTable) -> None:
386
386
  table.AddColumn(header, cells, column_index, force_replace)
387
387
 
388
- this.MapTableAt(table_index, _arrow731)
388
+ this.MapTableAt(table_index, _arrow732)
389
389
 
390
390
  def AddColumn(self, table_name: str, header: CompositeHeader, cells: Array[CompositeCell] | None=None, column_index: int | None=None, force_replace: bool | None=None) -> None:
391
391
  this: ArcTables = self
@@ -406,10 +406,10 @@ class ArcTables:
406
406
 
407
407
  def UpdateColumnAt(self, table_index: int, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
408
408
  this: ArcTables = self
409
- def _arrow734(table: ArcTable) -> None:
409
+ def _arrow735(table: ArcTable) -> None:
410
410
  table.UpdateColumn(column_index, header, cells)
411
411
 
412
- this.MapTableAt(table_index, _arrow734)
412
+ this.MapTableAt(table_index, _arrow735)
413
413
 
414
414
  def UpdateColumn(self, table_name: str, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
415
415
  this: ArcTables = self
@@ -428,10 +428,10 @@ class ArcTables:
428
428
 
429
429
  def AddRowAt(self, table_index: int, cells: Array[CompositeCell] | None=None, row_index: int | None=None) -> None:
430
430
  this: ArcTables = self
431
- def _arrow737(table: ArcTable) -> None:
431
+ def _arrow738(table: ArcTable) -> None:
432
432
  table.AddRow(cells, row_index)
433
433
 
434
- this.MapTableAt(table_index, _arrow737)
434
+ this.MapTableAt(table_index, _arrow738)
435
435
 
436
436
  def AddRow(self, table_name: str, cells: Array[CompositeCell] | None=None, row_index: int | None=None) -> None:
437
437
  this: ArcTables = self
@@ -440,10 +440,10 @@ class ArcTables:
440
440
 
441
441
  def RemoveRowAt(self, table_index: int, row_index: int) -> None:
442
442
  this: ArcTables = self
443
- def _arrow738(table: ArcTable) -> None:
443
+ def _arrow740(table: ArcTable) -> None:
444
444
  table.RemoveRow(row_index)
445
445
 
446
- this.MapTableAt(table_index, _arrow738)
446
+ this.MapTableAt(table_index, _arrow740)
447
447
 
448
448
  def RemoveRow(self, table_name: str, row_index: int) -> None:
449
449
  this: ArcTables = self
@@ -452,10 +452,10 @@ class ArcTables:
452
452
 
453
453
  def UpdateRowAt(self, table_index: int, row_index: int, cells: Array[CompositeCell]) -> None:
454
454
  this: ArcTables = self
455
- def _arrow740(table: ArcTable) -> None:
455
+ def _arrow741(table: ArcTable) -> None:
456
456
  table.UpdateRow(row_index, cells)
457
457
 
458
- this.MapTableAt(table_index, _arrow740)
458
+ this.MapTableAt(table_index, _arrow741)
459
459
 
460
460
  def UpdateRow(self, table_name: str, row_index: int, cells: Array[CompositeCell]) -> None:
461
461
  this: ArcTables = self
@@ -492,13 +492,13 @@ class ArcTables:
492
492
 
493
493
  return map_2(mapping, t.TryGetProtocolNameColumn())
494
494
 
495
- class ObjectExpr743:
495
+ class ObjectExpr744:
496
496
  @property
497
497
  def Compare(self) -> Callable[[str, str], int]:
498
498
  return compare_primitives
499
499
 
500
- reference_table_map: Any = of_seq_1(choose(chooser, reference_tables.Tables), ObjectExpr743())
501
- def _arrow746(__unit: None=None) -> IEnumerable_1[ArcTable]:
500
+ reference_table_map: Any = of_seq_1(choose(chooser, reference_tables.Tables), ObjectExpr744())
501
+ def _arrow751(__unit: None=None) -> IEnumerable_1[ArcTable]:
502
502
  def f_3(tupled_arg: tuple[str, Array[ArcTable]]) -> ArcTable:
503
503
  def reduction(table: ArcTable, table_1: ArcTable, tupled_arg: Any=tupled_arg) -> ArcTable:
504
504
  return ArcTable.append(table, table_1)
@@ -535,11 +535,11 @@ class ArcTables:
535
535
  return ArcTable.from_arc_table_values(t_1.Name, updated_table.Headers, updated_table.Values)
536
536
 
537
537
 
538
- def _arrow745(__unit: None=None) -> Array[ArcTable]:
538
+ def _arrow749(__unit: None=None) -> Array[ArcTable]:
539
539
  a: Array[ArcTable] = sheet_tables.Tables
540
540
  return ResizeArray_collect(ArcTable.SplitByProtocolREF(), a)
541
541
 
542
- s: Array[ArcTable] = ResizeArray_map(f_3, ResizeArray_groupBy(f_2, ResizeArray_map(f_1, _arrow745())))
542
+ s: Array[ArcTable] = ResizeArray_map(f_3, ResizeArray_groupBy(f_2, ResizeArray_map(f_1, _arrow749())))
543
543
  def chooser_1(kv: Any) -> ArcTable | None:
544
544
  if kv[0] in used_tables:
545
545
  return None
@@ -550,7 +550,7 @@ class ArcTables:
550
550
 
551
551
  return append(choose(chooser_1, reference_table_map), s) if keep_unused_ref_tables_1 else s
552
552
 
553
- return ArcTables(list(_arrow746()))
553
+ return ArcTables(list(_arrow751()))
554
554
 
555
555
  def GetEnumerator(self, __unit: None=None) -> IEnumerator[ArcTable]:
556
556
  this: ArcTables = self
@@ -564,7 +564,7 @@ class ArcTables:
564
564
  return get_enumerator(this.Tables)
565
565
 
566
566
 
567
- ArcTables_reflection = _expr754
567
+ ArcTables_reflection = _expr756
568
568
 
569
569
  def ArcTables__ctor_Z420F2E1A(init_tables: Array[ArcTable]) -> ArcTables:
570
570
  return ArcTables(init_tables)