arctrl 3.0.0b1__tar.gz → 3.0.0b2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/PKG-INFO +1 -1
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/pyproject.toml +1 -1
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/outputs.py +4 -4
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/requirements.py +8 -8
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/tool_description.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/workflow_description.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/arc_table.py +25 -25
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/arc_tables.py +27 -27
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/arc_types.py +213 -213
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/conversion.py +22 -22
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data.py +9 -7
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/file_system_tree.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/DataMap/data_context.py +24 -24
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/DataMap/data_map.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/factor.py +19 -19
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/factor_value.py +18 -18
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process.py +24 -24
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process_input.py +4 -4
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process_output.py +8 -8
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/protocol_parameter.py +13 -13
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/sample.py +32 -32
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldref.py +10 -10
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/arc_table.py +83 -83
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/cell_table.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/oatable.py +10 -10
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/templates.py +65 -65
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_context.py +12 -12
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_protocol_parameter_context.py +12 -12
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/rocrate_context.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/converter_options.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/data_file.py +8 -8
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/decode.py +4 -4
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/encode.py +10 -10
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/investigation.py +77 -77
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/person.py +51 -51
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/property_value.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/publication.py +21 -21
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/study.py +108 -108
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/JsonIO/comment.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/assays.py +8 -8
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/contacts.py +8 -8
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_annotation.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/protocols.py +9 -9
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/publication.py +10 -10
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Spreadsheet/Metadata/study.py +32 -32
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/arc.py +193 -190
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/column_index.py +9 -9
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/dsl.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/types.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/workbook_builder.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/cell.py +8 -8
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/row.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +21 -21
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Ranges/fs_range_address.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Tables/fs_table_row.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_column.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/fs_worksheet.py +6 -6
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/fs_spreadsheet/sheet_builder.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_python/decode.py +4 -4
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/thoth_json_python/encode.py +2 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/fable_modules/yamlicious/decode.py +20 -20
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/json.py +54 -2
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/rocrate_io.py +18 -5
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/xlsx.py +10 -10
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/LICENSE +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/README.md +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/cwltypes.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/decode.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/encode.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/inputs.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/CWL/workflow_steps.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_assay.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_investigation.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_run.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_study.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/arc_workflow.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/contract.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/datamap.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/git.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Contract/validation_packages_config.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/ContractIO/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/ContractIO/contract_io.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/ContractIO/file_system_helper.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/collections_.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/date_time.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/hash_codes.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/identifier.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/orcid.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/printer.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/regex.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/sem_ver.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Helper/url.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/column_index.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/component.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/factor.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/factor_value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material_attribute.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material_attribute_value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/material_type.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_input.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_output.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_parameter_value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/process_sequence.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/protocol.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/protocol_parameter.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/sample.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Process/source.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/arc_table_aux.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/composite_cell.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/composite_column.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/Table/composite_header.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/comment.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/comment_list.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data_file.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/data_map.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/identifier_setters.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/iproperty_value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/ontology_annotation.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/ontology_source_reference.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/person.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/publication.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/template.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/templates.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/uri.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Core/value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/commit.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/default_gitattributes.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/default_gitignore.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/file_system.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/FileSystem/path.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/DataMap/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/assay_materials.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/component.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material_attribute.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material_attribute_value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/material_type.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/process_parameter_value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/protocol.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/source.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/study_materials.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Process/value.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldcontext.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldgraph.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldnode.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/ROCrate/ldvalue.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/composite_cell.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/Table/composite_header.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/assay.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/comment.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/__init__.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_assay_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_comment_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_component_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_data_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_factor_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_factor_value_context.py +0 -0
- {arctrl-3.0.0b1 → arctrl-3.0.0b2}/src/ARCtrl/py/Json/context/rocrate/isa_investigation_context.py +0 -0
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def ResourceRequirementInstance__ctor_D76FC00(cores_min: Any | None=None, cores_max: Any | None=None, ram_min: Any | None=None, ram_max: Any | None=None, tmpdir_min: Any | None=None, tmpdir_max: Any | None=None, outdir_min: Any | None=None, outdir_max: Any | None=None) -> ResourceRequirementInstance:
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return union_type("ARCtrl.CWL.Requirement", [], Requirement, lambda: [[], [("Item", array_type(SchemaDefRequirementType_reflection()))], [("Item", DockerRequirement_reflection())], [("Item", array_type(SoftwarePackage_reflection()))], [("Item", array_type(CWLType_reflection()))], [("Item", array_type(EnvironmentDef_reflection()))], [], [("Item", ResourceRequirementInstance_reflection())], [], [], [], [("Item", float64_type)], [], [], [], []])
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return ["InlineJavascriptRequirement", "SchemaDefRequirement", "DockerRequirement", "SoftwareRequirement", "InitialWorkDirRequirement", "EnvVarRequirement", "ShellCommandRequirement", "ResourceRequirement", "WorkReuseRequirement", "NetworkAccessRequirement", "InplaceUpdateRequirement", "ToolTimeLimitRequirement", "SubworkflowFeatureRequirement", "ScatterFeatureRequirement", "MultipleInputFeatureRequirement", "StepInputExpressionRequirement"]
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def CWLToolDescription__ctor_Z3224DB85(outputs: Array[CWLOutput], cwl_version: str | None=None, base_command: Array[str] | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, inputs: Array[CWLInput] | None=None, metadata: DynamicObj | None=None) -> CWLToolDescription:
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def CWLWorkflowDescription__ctor_704BBD06(steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> CWLWorkflowDescription:
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def AddColumn(self, header: CompositeHeader, cells: Array[CompositeCell] | None=None, index: int | None=None, force_replace: bool | None=None) -> None:
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def add_column_fill(header: CompositeHeader, cell: CompositeCell, index: int | None=None, force_replace: bool | None=None) -> Callable[[ArcTable], ArcTable]:
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def UpdateColumn(self, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
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@staticmethod
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def update_column(column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
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def InsertColumn(self, index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
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this: ArcTable = self
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@staticmethod
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def append_column(header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> Callable[[ArcTable], ArcTable]:
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def _arrow743(table: ArcTable) -> ArcTable:
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new_table.AppendColumn(header, cells)
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return new_table
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return
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return _arrow743
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|
def AddColumns(self, columns: IEnumerable_1[CompositeColumn], index: int | None=None, force_replace: bool | None=None) -> None:
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this: ArcTable = self
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|
@@ -461,12 +461,12 @@ class ArcTable:
|
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|
@staticmethod
|
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|
def add_columns(columns: Array[CompositeColumn], index: int | None=None) -> Callable[[ArcTable], ArcTable]:
|
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def
|
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+
def _arrow745(table: ArcTable) -> ArcTable:
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new_table: ArcTable = table.Copy()
|
|
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new_table.AddColumns(columns, index)
|
|
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return new_table
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return
|
|
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return _arrow745
|
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def RemoveColumn(self, index: int) -> None:
|
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this: ArcTable = self
|
|
@@ -477,28 +477,28 @@ class ArcTable:
|
|
|
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|
|
|
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|
@staticmethod
|
|
479
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|
def remove_column(index: int) -> Callable[[ArcTable], ArcTable]:
|
|
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|
-
def
|
|
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|
+
def _arrow746(table: ArcTable) -> ArcTable:
|
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new_table: ArcTable = table.Copy()
|
|
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|
new_table.RemoveColumn(index)
|
|
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|
return new_table
|
|
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|
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|
-
return
|
|
485
|
+
return _arrow746
|
|
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|
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|
def RemoveColumns(self, index_arr: Array[int]) -> None:
|
|
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this: ArcTable = self
|
|
489
|
-
def
|
|
489
|
+
def _arrow747(index: int) -> None:
|
|
490
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|
SanityChecks_validateColumnIndex(index, this.ColumnCount, False)
|
|
491
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|
|
|
492
|
-
iterate_2(
|
|
493
|
-
def
|
|
492
|
+
iterate_2(_arrow747, index_arr)
|
|
493
|
+
def _arrow748(index_1: int) -> None:
|
|
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|
this.RemoveColumn(index_1)
|
|
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|
|
|
496
|
-
class
|
|
496
|
+
class ObjectExpr750:
|
|
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|
@property
|
|
498
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|
def Compare(self) -> Callable[[int, int], int]:
|
|
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return compare_primitives
|
|
500
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|
|
|
501
|
-
iterate_2(
|
|
501
|
+
iterate_2(_arrow748, sort_descending(index_arr, ObjectExpr750()))
|
|
502
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|
|
|
503
503
|
@staticmethod
|
|
504
504
|
def remove_columns(index_arr: Array[int]) -> Callable[[ArcTable], ArcTable]:
|
|
@@ -541,10 +541,10 @@ class ArcTable:
|
|
|
541
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|
|
|
542
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|
@staticmethod
|
|
543
543
|
def get_column(index: int, fill_default: bool | None=None) -> Callable[[ArcTable], CompositeColumn]:
|
|
544
|
-
def
|
|
544
|
+
def _arrow753(table: ArcTable) -> CompositeColumn:
|
|
545
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return table.GetColumn(index, fill_default)
|
|
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|
|
547
|
-
return
|
|
547
|
+
return _arrow753
|
|
548
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|
|
|
549
549
|
def TryGetColumnByHeader(self, header: CompositeHeader, fill_default: bool | None=None) -> CompositeColumn | None:
|
|
550
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this: ArcTable = self
|
|
@@ -558,10 +558,10 @@ class ArcTable:
|
|
|
558
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|
|
|
559
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|
@staticmethod
|
|
560
560
|
def try_get_column_by_header(header: CompositeHeader, fill_default: bool | None=None) -> Callable[[ArcTable], CompositeColumn | None]:
|
|
561
|
-
def
|
|
561
|
+
def _arrow754(table: ArcTable) -> CompositeColumn | None:
|
|
562
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|
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|
|
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|
|
|
564
|
-
return
|
|
564
|
+
return _arrow754
|
|
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565
|
|
|
566
566
|
def TryGetColumnByHeaderBy(self, header_predicate: Callable[[CompositeHeader], bool], fill_default: bool | None=None) -> CompositeColumn | None:
|
|
567
567
|
this: ArcTable = self
|
|
@@ -178,10 +178,10 @@ def ArcTablesAux_SanityChecks_validateNamesUnique(names: IEnumerable_1[str]) ->
|
|
|
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|
|
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|
|
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|
def ArcTablesAux_SanityChecks_validateNewNameUnique(new_name: str, existing_names: IEnumerable_1[str]) -> None:
|
|
181
|
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def
|
|
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|
+
def _arrow719(x: str, new_name: Any=new_name, existing_names: Any=existing_names) -> bool:
|
|
182
182
|
return x == new_name
|
|
183
183
|
|
|
184
|
-
match_value: int | None = try_find_index(
|
|
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|
+
match_value: int | None = try_find_index(_arrow719, existing_names)
|
|
185
185
|
if match_value is None:
|
|
186
186
|
pass
|
|
187
187
|
|
|
@@ -191,10 +191,10 @@ def ArcTablesAux_SanityChecks_validateNewNameUnique(new_name: str, existing_name
|
|
|
191
191
|
|
|
192
192
|
|
|
193
193
|
def ArcTablesAux_SanityChecks_validateNewNameAtUnique(index: int, new_name: str, existing_names: IEnumerable_1[str]) -> None:
|
|
194
|
-
def
|
|
194
|
+
def _arrow720(x: str, index: Any=index, new_name: Any=new_name, existing_names: Any=existing_names) -> bool:
|
|
195
195
|
return x == new_name
|
|
196
196
|
|
|
197
|
-
match_value: int | None = try_find_index(
|
|
197
|
+
match_value: int | None = try_find_index(_arrow720, existing_names)
|
|
198
198
|
if match_value is None:
|
|
199
199
|
pass
|
|
200
200
|
|
|
@@ -209,36 +209,36 @@ def ArcTablesAux_SanityChecks_validateNewNameAtUnique(index: int, new_name: str,
|
|
|
209
209
|
|
|
210
210
|
def ArcTablesAux_SanityChecks_validateNewNamesUnique(new_names: IEnumerable_1[str], existing_names: IEnumerable_1[str]) -> None:
|
|
211
211
|
ArcTablesAux_SanityChecks_validateNamesUnique(new_names)
|
|
212
|
-
class
|
|
212
|
+
class ObjectExpr721:
|
|
213
213
|
@property
|
|
214
214
|
def Compare(self) -> Callable[[str, str], int]:
|
|
215
215
|
return compare_primitives
|
|
216
216
|
|
|
217
|
-
class
|
|
217
|
+
class ObjectExpr722:
|
|
218
218
|
@property
|
|
219
219
|
def Compare(self) -> Callable[[str, str], int]:
|
|
220
220
|
return compare_primitives
|
|
221
221
|
|
|
222
|
-
same: Any = intersect(of_seq(new_names,
|
|
222
|
+
same: Any = intersect(of_seq(new_names, ObjectExpr721()), of_seq(existing_names, ObjectExpr722()))
|
|
223
223
|
if not FSharpSet__get_IsEmpty(same):
|
|
224
224
|
raise Exception(("Cannot create tables with the names " + str(same)) + ", as table names must be unique.")
|
|
225
225
|
|
|
226
226
|
|
|
227
227
|
|
|
228
|
-
def
|
|
228
|
+
def _expr756() -> TypeInfo:
|
|
229
229
|
return class_type("ARCtrl.ArcTables", None, ArcTables)
|
|
230
230
|
|
|
231
231
|
|
|
232
232
|
class ArcTables:
|
|
233
233
|
def __init__(self, init_tables: Array[ArcTable]) -> None:
|
|
234
|
-
def
|
|
234
|
+
def _expr755():
|
|
235
235
|
def mapping(t: ArcTable) -> str:
|
|
236
236
|
return t.Name
|
|
237
237
|
|
|
238
238
|
ArcTablesAux_SanityChecks_validateNamesUnique(map_1(mapping, init_tables))
|
|
239
239
|
return init_tables
|
|
240
240
|
|
|
241
|
-
self.tables: Array[ArcTable] =
|
|
241
|
+
self.tables: Array[ArcTable] = _expr755()
|
|
242
242
|
|
|
243
243
|
@property
|
|
244
244
|
def Tables(self, __unit: None=None) -> Array[ArcTable]:
|
|
@@ -382,10 +382,10 @@ class ArcTables:
|
|
|
382
382
|
|
|
383
383
|
def AddColumnAt(self, table_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None, column_index: int | None=None, force_replace: bool | None=None) -> None:
|
|
384
384
|
this: ArcTables = self
|
|
385
|
-
def
|
|
385
|
+
def _arrow732(table: ArcTable) -> None:
|
|
386
386
|
table.AddColumn(header, cells, column_index, force_replace)
|
|
387
387
|
|
|
388
|
-
this.MapTableAt(table_index,
|
|
388
|
+
this.MapTableAt(table_index, _arrow732)
|
|
389
389
|
|
|
390
390
|
def AddColumn(self, table_name: str, header: CompositeHeader, cells: Array[CompositeCell] | None=None, column_index: int | None=None, force_replace: bool | None=None) -> None:
|
|
391
391
|
this: ArcTables = self
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def UpdateColumnAt(self, table_index: int, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
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this: ArcTables = self
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def
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def _arrow735(table: ArcTable) -> None:
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table.UpdateColumn(column_index, header, cells)
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this.MapTableAt(table_index,
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this.MapTableAt(table_index, _arrow735)
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def UpdateColumn(self, table_name: str, column_index: int, header: CompositeHeader, cells: Array[CompositeCell] | None=None) -> None:
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this: ArcTables = self
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@@ -428,10 +428,10 @@ class ArcTables:
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def AddRowAt(self, table_index: int, cells: Array[CompositeCell] | None=None, row_index: int | None=None) -> None:
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this: ArcTables = self
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def
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def _arrow738(table: ArcTable) -> None:
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table.AddRow(cells, row_index)
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this.MapTableAt(table_index,
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this.MapTableAt(table_index, _arrow738)
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def AddRow(self, table_name: str, cells: Array[CompositeCell] | None=None, row_index: int | None=None) -> None:
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this: ArcTables = self
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@@ -440,10 +440,10 @@ class ArcTables:
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def RemoveRowAt(self, table_index: int, row_index: int) -> None:
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this: ArcTables = self
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def
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def _arrow740(table: ArcTable) -> None:
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table.RemoveRow(row_index)
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this.MapTableAt(table_index,
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this.MapTableAt(table_index, _arrow740)
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def RemoveRow(self, table_name: str, row_index: int) -> None:
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this: ArcTables = self
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@@ -452,10 +452,10 @@ class ArcTables:
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def UpdateRowAt(self, table_index: int, row_index: int, cells: Array[CompositeCell]) -> None:
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this: ArcTables = self
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def
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def _arrow741(table: ArcTable) -> None:
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table.UpdateRow(row_index, cells)
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this.MapTableAt(table_index,
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this.MapTableAt(table_index, _arrow741)
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def UpdateRow(self, table_name: str, row_index: int, cells: Array[CompositeCell]) -> None:
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this: ArcTables = self
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@@ -492,13 +492,13 @@ class ArcTables:
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return map_2(mapping, t.TryGetProtocolNameColumn())
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class
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+
class ObjectExpr744:
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@property
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def Compare(self) -> Callable[[str, str], int]:
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return compare_primitives
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reference_table_map: Any = of_seq_1(choose(chooser, reference_tables.Tables),
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def
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reference_table_map: Any = of_seq_1(choose(chooser, reference_tables.Tables), ObjectExpr744())
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def _arrow751(__unit: None=None) -> IEnumerable_1[ArcTable]:
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def f_3(tupled_arg: tuple[str, Array[ArcTable]]) -> ArcTable:
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def reduction(table: ArcTable, table_1: ArcTable, tupled_arg: Any=tupled_arg) -> ArcTable:
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return ArcTable.append(table, table_1)
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@@ -535,11 +535,11 @@ class ArcTables:
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return ArcTable.from_arc_table_values(t_1.Name, updated_table.Headers, updated_table.Values)
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-
def
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def _arrow749(__unit: None=None) -> Array[ArcTable]:
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a: Array[ArcTable] = sheet_tables.Tables
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return ResizeArray_collect(ArcTable.SplitByProtocolREF(), a)
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-
s: Array[ArcTable] = ResizeArray_map(f_3, ResizeArray_groupBy(f_2, ResizeArray_map(f_1,
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+
s: Array[ArcTable] = ResizeArray_map(f_3, ResizeArray_groupBy(f_2, ResizeArray_map(f_1, _arrow749())))
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def chooser_1(kv: Any) -> ArcTable | None:
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if kv[0] in used_tables:
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return None
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@@ -550,7 +550,7 @@ class ArcTables:
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return append(choose(chooser_1, reference_table_map), s) if keep_unused_ref_tables_1 else s
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-
return ArcTables(list(
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+
return ArcTables(list(_arrow751()))
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def GetEnumerator(self, __unit: None=None) -> IEnumerator[ArcTable]:
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this: ArcTables = self
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@@ -564,7 +564,7 @@ class ArcTables:
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return get_enumerator(this.Tables)
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567
|
-
ArcTables_reflection =
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567
|
+
ArcTables_reflection = _expr756
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569
569
|
def ArcTables__ctor_Z420F2E1A(init_tables: Array[ArcTable]) -> ArcTables:
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570
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|
return ArcTables(init_tables)
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