arctrl 3.0.0b13__tar.gz → 3.0.0b14__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/PKG-INFO +1 -1
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/pyproject.toml +43 -43
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/__init__.py +2 -0
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/CWL/cwlprocessing_unit.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/CWL/cwltypes.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/CWL/decode.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/CWL/hash_helpers.py +3 -3
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/CWL/workflow_description.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/arc_assay.py +9 -9
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/arc_investigation.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/arc_study.py +9 -9
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/arc_workflow.py +16 -16
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/contract.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/datamap.py +65 -65
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/git.py +16 -16
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/license.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Contract/validation_packages_config.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ContractIO/contract_io.py +87 -87
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ContractIO/file_system_helper.py +62 -62
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/assay.py +15 -15
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/basic.py +5 -5
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/column_index.py +28 -7
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/datamap.py +7 -7
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/date_time.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/investigation.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/person.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/process.py +127 -127
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/run.py +19 -19
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/scholarly_article.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/study.py +15 -15
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/table.py +9 -9
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Conversion/workflow.py +28 -28
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Helper/date_time.py +3 -3
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Process/component.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Process/process.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Process/process_sequence.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Process/protocol_parameter.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Table/arc_table.py +20 -20
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Table/arc_tables.py +16 -16
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Table/composite_column.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/Table/composite_header.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/arc_types.py +685 -685
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Core/conversion.py +11 -11
- arctrl-3.0.0b13/src/ARCtrl/py/Core/data_map.py → arctrl-3.0.0b14/src/ARCtrl/py/Core/datamap.py +57 -57
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/FileSystem/file_system.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/FileSystem/file_system_tree.py +63 -63
- {arctrl-3.0.0b13/src/ARCtrl/py/Json/DataMap → arctrl-3.0.0b14/src/ARCtrl/py/Json/Datamap}/data_context.py +24 -24
- arctrl-3.0.0b13/src/ARCtrl/py/Json/DataMap/data_map.py → arctrl-3.0.0b14/src/ARCtrl/py/Json/Datamap/datamap.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/assay_materials.py +5 -5
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/component.py +22 -22
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/factor.py +19 -19
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/factor_value.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/material.py +46 -46
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/material_attribute.py +13 -13
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/material_attribute_value.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/material_type.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/process.py +70 -70
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/process_input.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/process_output.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/process_parameter_value.py +14 -14
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/protocol.py +75 -75
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/protocol_parameter.py +13 -13
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/sample.py +41 -41
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/source.py +35 -35
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/study_materials.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Process/value.py +11 -11
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/ROCrate/ldgraph.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/ROCrate/ldnode.py +9 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/ROCrate/ldref.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/arc_table.py +85 -85
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/cell_table.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/composite_cell.py +25 -25
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/composite_header.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/iotype.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/oatable.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/Table/templates.py +65 -65
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/assay.py +146 -146
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/comment.py +48 -48
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/context/rocrate/isa_assay_context.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/context/rocrate/isa_comment_context.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/context/rocrate/isa_component_context.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/context/rocrate/isa_data_context.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/context/rocrate/isa_study_context.py +9 -9
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/context/rocrate/rocrate_context.py +12 -12
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/converter_options.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/data.py +88 -88
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/data_file.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/decode.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/encode.py +16 -16
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/idtable.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/investigation.py +161 -161
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/ontology_annotation.py +96 -96
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/ontology_source_reference.py +68 -68
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/person.py +164 -164
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/property_value.py +50 -50
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/publication.py +71 -71
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/run.py +77 -77
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/string_table.py +15 -15
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/study.py +197 -197
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Json/workflow.py +89 -89
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/component.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/factor.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/factor_value.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/material.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/material_attribute.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/material_attribute_value.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/material_type.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/process.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/process_input.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/process_output.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/process_parameter_value.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/process_sequence.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/protocol.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/protocol_parameter.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/sample.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/source.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/study_materials.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Process/value.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Table/arc_table.py +12 -12
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Table/composite_cell.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Table/composite_header.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Table/iotype.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/Table/templates.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/assay.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/comment.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/data.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/data_file.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/datamap.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/investigation.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/ldobject.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/ontology_annotation.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/ontology_source_reference.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/person.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/publication.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/run.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/study.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/JsonIO/workflow.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ROCrate/ISAProfile/data.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ROCrate/ISAProfile/lab_protocol.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ROCrate/ISAProfile/property_value.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ROCrate/ISAProfile/sample.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ROCrate/LDTypes/dataset.py +29 -29
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ROCrate/rocrate_context.py +1 -1
- arctrl-3.0.0b13/src/ARCtrl/py/Spreadsheet/DataMapTable/data_map_column.py → arctrl-3.0.0b14/src/ARCtrl/py/Spreadsheet/DatamapTable/datamap_column.py +24 -24
- arctrl-3.0.0b13/src/ARCtrl/py/Spreadsheet/DataMapTable/data_map_header.py → arctrl-3.0.0b14/src/ARCtrl/py/Spreadsheet/DatamapTable/datamap_header.py +10 -10
- arctrl-3.0.0b13/src/ARCtrl/py/Spreadsheet/DataMapTable/data_map_table.py → arctrl-3.0.0b14/src/ARCtrl/py/Spreadsheet/DatamapTable/datamap_table.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/assays.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/contacts.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/factors.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/ontology_annotation.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/protocols.py +9 -9
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/publication.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/sparse_table.py +15 -15
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/study.py +32 -32
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/Metadata/workflow.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/arc_assay.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/arc_run.py +4 -4
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/arc_study.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Spreadsheet/arc_workflow.py +4 -4
- arctrl-3.0.0b13/src/ARCtrl/py/Spreadsheet/data_map.py → arctrl-3.0.0b14/src/ARCtrl/py/Spreadsheet/datamap.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ValidationPackages/validation_package.py +10 -10
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/ValidationPackages/validation_packages_config.py +20 -20
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/WebRequest/web_request_py.py +15 -15
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Yaml/validation_package.py +15 -15
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/Yaml/validation_packages_config.py +16 -16
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/arc.py +317 -317
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/column_index.py +9 -9
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/conversion.py +2 -2
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/cross_async.py +18 -18
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Cells/fs_cells_collection.py +20 -20
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/fable_modules/fs_spreadsheet/DSL/expression.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/cell.py +8 -8
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/row.py +6 -6
- {arctrl-3.0.0b13 → arctrl-3.0.0b14}/src/ARCtrl/py/fable_modules/fs_spreadsheet/Json/worksheet.py +2 -2
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name = "arctrl"
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version = "3.0.0b14"
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{ name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
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{ name = "Kevin Frey", email = "freymaurer@gmx.de" },
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@@ -4,7 +4,7 @@ from ..fable_modules.fable_library.types import (Array, Union)
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|
|
@@ -92,7 +92,7 @@ def CWLType_directory(__unit: None=None) -> CWLType:
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|
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@@ -118,13 +118,13 @@ class InputEnumSchema(DynamicObj):
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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@@ -153,13 +153,13 @@ class SchemaDefRequirementType(DynamicObj):
|
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|
set_property("types", definitions, this.contents)
|
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|
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|
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|
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|
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|
def SchemaDefRequirementType__ctor_541DA560(types: Any=None, definitions: Any=None) -> SchemaDefRequirementType:
|
|
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|
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|
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|
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def
|
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|
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|
|
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163
|
return record_type("ARCtrl.CWL.SoftwarePackage", [], SoftwarePackage, lambda: [("Package", string_type), ("Version", option_type(array_type(string_type))), ("Specs", option_type(array_type(string_type)))])
|
|
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@@ -169,7 +169,7 @@ class SoftwarePackage(Record):
|
|
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|
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|
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|
Specs: Array[str] | None
|
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|
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|
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|
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|
__all__ = ["FileInstance_reflection", "DirectoryInstance_reflection", "DirentInstance_reflection", "CWLType_reflection", "CWLType_file", "CWLType_directory", "InputRecordSchema_reflection", "InputEnumSchema_reflection", "InputArraySchema_reflection", "SchemaDefRequirementType_reflection", "SoftwarePackage_reflection"]
|
|
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|
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|
@@ -1102,10 +1102,10 @@ def DecodeParameters_cwlParameterReferenceDecoder(get: IGetters, key: str, y_ele
|
|
|
1102
1102
|
return CWLParameterReference(key, [v2.Value], Decode_cwlTypeStringMatcher(v1.Value, get)[0])
|
|
1103
1103
|
|
|
1104
1104
|
elif pattern_matching_result == 2:
|
|
1105
|
-
def
|
|
1105
|
+
def _arrow603(value: YAMLElement, get: Any=get, key: Any=key, y_ele: Any=y_ele) -> str:
|
|
1106
1106
|
return string(value)
|
|
1107
1107
|
|
|
1108
|
-
return CWLParameterReference(key, resizearray(
|
|
1108
|
+
return CWLParameterReference(key, resizearray(_arrow603, YAMLElement(2, s)))
|
|
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1109
|
|
|
1110
1110
|
elif pattern_matching_result == 3:
|
|
1111
1111
|
raise Exception(("" + str(y_ele)) + "")
|
|
@@ -31,15 +31,15 @@ def hash_1(obj: Any | None=None) -> int:
|
|
|
31
31
|
|
|
32
32
|
|
|
33
33
|
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|
|
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|
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def
|
|
34
|
+
def _arrow455(__unit: None=None, a: Any=a) -> int:
|
|
35
35
|
copy_of_struct: _A = value_1(a)
|
|
36
36
|
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|
|
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|
|
|
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|
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|
|
38
|
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|
|
39
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|
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|
|
40
40
|
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|
|
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|
|
|
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|
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return
|
|
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|
+
return _arrow455() if (a is not None) else _arrow456()
|
|
43
43
|
|
|
44
44
|
|
|
45
45
|
def box_hash_array(a: Array[Any]) -> Any:
|
|
@@ -8,7 +8,7 @@ from .outputs import CWLOutput
|
|
|
8
8
|
from .requirements import Requirement
|
|
9
9
|
from .workflow_steps import WorkflowStep
|
|
10
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|
|
|
11
|
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def
|
|
11
|
+
def _expr519() -> TypeInfo:
|
|
12
12
|
return class_type("ARCtrl.CWL.CWLWorkflowDescription", None, CWLWorkflowDescription, DynamicObj_reflection())
|
|
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|
|
|
14
14
|
|
|
@@ -94,7 +94,7 @@ class CWLWorkflowDescription(DynamicObj):
|
|
|
94
94
|
this._metadata = metadata
|
|
95
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|
|
|
96
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|
|
|
97
|
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|
|
97
|
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|
|
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|
|
|
99
99
|
def CWLWorkflowDescription__ctor_704BBD06(steps: Array[WorkflowStep], inputs: Array[CWLInput], outputs: Array[CWLOutput], cwl_version: str | None=None, requirements: Array[Requirement] | None=None, hints: Array[Requirement] | None=None, metadata: DynamicObj | None=None) -> CWLWorkflowDescription:
|
|
100
100
|
return CWLWorkflowDescription(steps, inputs, outputs, cwl_version, requirements, hints, metadata)
|
|
@@ -14,10 +14,10 @@ from .contract import (Contract, DTOType, DTO)
|
|
|
14
14
|
|
|
15
15
|
def _007CAssayPath_007C__007C(input: Array[str]) -> str | None:
|
|
16
16
|
(pattern_matching_result,) = (None,)
|
|
17
|
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def
|
|
17
|
+
def _arrow3724(x: str, y: str, input: Any=input) -> bool:
|
|
18
18
|
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|
|
19
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|
|
|
20
|
-
if (len(input) == 3) if (not equals_with(
|
|
20
|
+
if (len(input) == 3) if (not equals_with(_arrow3724, input, None)) else False:
|
|
21
21
|
if input[0] == "assays":
|
|
22
22
|
if input[2] == "isa.assay.xlsx":
|
|
23
23
|
pattern_matching_result = 0
|
|
@@ -46,20 +46,20 @@ def ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this: ArcAssay, WithFold
|
|
|
46
46
|
with_folder: bool = default_arg(WithFolder, False)
|
|
47
47
|
path: str = Assay_fileNameFromIdentifier(this.Identifier)
|
|
48
48
|
c: Contract = Contract.create_create(path, DTOType(0), DTO(0, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this)))
|
|
49
|
-
def
|
|
50
|
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def
|
|
49
|
+
def _arrow3728(__unit: None=None, this: Any=this, WithFolder: Any=WithFolder) -> IEnumerable_1[Contract]:
|
|
50
|
+
def _arrow3726(__unit: None=None) -> IEnumerable_1[Contract]:
|
|
51
51
|
folder_fs: FileSystemTree = FileSystemTree.create_assays_folder([FileSystemTree.create_assay_folder(this.Identifier)])
|
|
52
|
-
def
|
|
52
|
+
def _arrow3725(p: str) -> IEnumerable_1[Contract]:
|
|
53
53
|
return singleton(Contract.create_create(p, DTOType(10))) if ((p != "assays/.gitkeep") if (p != path) else False) else empty()
|
|
54
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|
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def _007CInvestigationPath_007C__007C(input: Array[str]) -> str | None:
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@@ -15,10 +15,10 @@ from .contract import (Contract, DTOType, DTO)
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def _007CStudyPath_007C__007C(input: Array[str]) -> str | None:
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with_folder: bool = default_arg(WithFolder, False)
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path: str = Study_fileNameFromIdentifier(this.Identifier)
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c: Contract = Contract.create_create(path, DTOType(1), DTO(0, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this)))
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def ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this: ArcStudy) -> Contract:
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@@ -17,10 +17,10 @@ from .contract import (Contract, DTOType, DTO)
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def _007CWorkflowPath_007C__007C(input: Array[str]) -> str | None:
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def
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def _arrow3734(x: str, y: str, input: Any=input) -> bool:
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if (len(input) == 3) if (not equals_with(
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if (len(input) == 3) if (not equals_with(_arrow3734, input, None)) else False:
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|
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@@ -47,10 +47,10 @@ def _007CWorkflowPath_007C__007C(input: Array[str]) -> str | None:
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def _007CWorkflowCWLPath_007C__007C(input: Array[str]) -> str | None:
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def
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def _arrow3735(x: str, y: str, input: Any=input) -> bool:
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if (len(input) == 3) if (not equals_with(
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if (len(input) == 3) if (not equals_with(_arrow3735, input, None)) else False:
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if input[0] == "workflows":
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if input[2] == "workflow.cwl":
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pattern_matching_result = 0
|
|
@@ -79,28 +79,28 @@ def ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this: ArcWorkflow,
|
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with_folder: bool = default_arg(WithFolder, False)
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|
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path: str = Workflow_fileNameFromIdentifier(this.Identifier)
|
|
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c: Contract = Contract.create_create(path, DTOType(2), DTO(0, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this)))
|
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def
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def
|
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+
def _arrow3741(__unit: None=None, this: Any=this, WithFolder: Any=WithFolder) -> IEnumerable_1[Contract]:
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def _arrow3737(__unit: None=None) -> IEnumerable_1[Contract]:
|
|
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folder_fs: FileSystemTree = FileSystemTree.create_workflows_folder([FileSystemTree.create_workflow_folder(this.Identifier)])
|
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|
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def
|
|
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|
+
def _arrow3736(p: str) -> IEnumerable_1[Contract]:
|
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return singleton(Contract.create_create(p, DTOType(10))) if ((p != "workflows/.gitkeep") if (p != path) else False) else empty()
|
|
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|
-
return collect(
|
|
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|
+
return collect(_arrow3736, folder_fs.ToFilePaths(False))
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def
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def
|
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+
def _arrow3740(__unit: None=None) -> IEnumerable_1[Contract]:
|
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|
+
def _arrow3738(__unit: None=None) -> IEnumerable_1[Contract]:
|
|
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92
|
path_1: str = Workflow_cwlFileNameFromIdentifier(this.Identifier)
|
|
93
93
|
dto: str = encode_processing_unit(value(this.CWLDescription))
|
|
94
94
|
return singleton(Contract.create_create(path_1, DTOType(8), DTO(1, dto)))
|
|
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|
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|
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|
-
def
|
|
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|
+
def _arrow3739(__unit: None=None) -> IEnumerable_1[Contract]:
|
|
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|
return singleton(c)
|
|
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|
|
|
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|
-
return append(
|
|
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|
+
return append(_arrow3738() if (this.CWLDescription is not None) else empty(), delay(_arrow3739))
|
|
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|
|
|
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|
-
return append(
|
|
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|
+
return append(_arrow3737() if with_folder else empty(), delay(_arrow3740))
|
|
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|
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|
-
return to_array(delay(
|
|
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|
+
return to_array(delay(_arrow3741))
|
|
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|
|
105
105
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|
|
106
106
|
def ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this: ArcWorkflow) -> Contract:
|
|
@@ -170,11 +170,11 @@ def ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static(workflow_ident
|
|
|
170
170
|
if c.DTOType.tag == 8:
|
|
171
171
|
if c.DTO is not None:
|
|
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172
|
if c.DTO.tag == 1:
|
|
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|
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def
|
|
173
|
+
def _arrow3742(__unit: None=None, workflow_identifier: Any=workflow_identifier, c: Any=c) -> bool:
|
|
174
174
|
cwl: str = c.DTO.fields[0]
|
|
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175
|
return c.Path == p
|
|
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|
|
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|
-
if
|
|
177
|
+
if _arrow3742():
|
|
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|
pattern_matching_result = 0
|
|
179
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|
cwl_1 = c.DTO.fields[0]
|
|
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180
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|
|
@@ -5,7 +5,7 @@ from ..fable_modules.fable_library.option import default_arg
|
|
|
5
5
|
from ..fable_modules.fable_library.reflection import (TypeInfo, union_type, string_type, array_type, record_type, obj_type, option_type)
|
|
6
6
|
from ..fable_modules.fable_library.types import (Array, Union, Record)
|
|
7
7
|
|
|
8
|
-
def
|
|
8
|
+
def _expr3666() -> TypeInfo:
|
|
9
9
|
return union_type("ARCtrl.Contract.DTOType", [], DTOType, lambda: [[], [], [], [], [], [], [], [], [], [], [], []])
|
|
10
10
|
|
|
11
11
|
|
|
@@ -20,9 +20,9 @@ class DTOType(Union):
|
|
|
20
20
|
return ["ISA_Assay", "ISA_Study", "ISA_Workflow", "ISA_Run", "ISA_Investigation", "ISA_Datamap", "JSON", "Markdown", "CWL", "YAML", "PlainText", "Cli"]
|
|
21
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|
|
|
22
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|
|
|
23
|
-
DTOType_reflection =
|
|
23
|
+
DTOType_reflection = _expr3666
|
|
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24
|
|
|
25
|
-
def
|
|
25
|
+
def _expr3669() -> TypeInfo:
|
|
26
26
|
return record_type("ARCtrl.Contract.CLITool", [], CLITool, lambda: [("Name", string_type), ("Arguments", array_type(string_type))])
|
|
27
27
|
|
|
28
28
|
|
|
@@ -35,9 +35,9 @@ class CLITool(Record):
|
|
|
35
35
|
return CLITool(name, arguments)
|
|
36
36
|
|
|
37
37
|
|
|
38
|
-
CLITool_reflection =
|
|
38
|
+
CLITool_reflection = _expr3669
|
|
39
39
|
|
|
40
|
-
def
|
|
40
|
+
def _expr3672() -> TypeInfo:
|
|
41
41
|
return union_type("ARCtrl.Contract.DTO", [], DTO, lambda: [[("Item", obj_type)], [("Item", string_type)], [("Item", CLITool_reflection())]])
|
|
42
42
|
|
|
43
43
|
|
|
@@ -52,7 +52,7 @@ class DTO(Union):
|
|
|
52
52
|
return ["Spreadsheet", "Text", "CLITool"]
|
|
53
53
|
|
|
54
54
|
|
|
55
|
-
DTO_reflection =
|
|
55
|
+
DTO_reflection = _expr3672
|
|
56
56
|
|
|
57
57
|
def DTO__get_isSpreadsheet(this: DTO) -> bool:
|
|
58
58
|
if this.tag == 0:
|
|
@@ -108,7 +108,7 @@ def DTO__AsCLITool(this: DTO) -> CLITool:
|
|
|
108
108
|
|
|
109
109
|
|
|
110
110
|
|
|
111
|
-
def
|
|
111
|
+
def _expr3692() -> TypeInfo:
|
|
112
112
|
return record_type("ARCtrl.Contract.Contract", [], Contract, lambda: [("Operation", string_type), ("Path", string_type), ("DTOType", option_type(DTOType_reflection())), ("DTO", option_type(DTO_reflection()))])
|
|
113
113
|
|
|
114
114
|
|
|
@@ -147,7 +147,7 @@ class Contract(Record):
|
|
|
147
147
|
return Contract("RENAME", old_path, None, DTO(1, new_path))
|
|
148
148
|
|
|
149
149
|
|
|
150
|
-
Contract_reflection =
|
|
150
|
+
Contract_reflection = _expr3692
|
|
151
151
|
|
|
152
152
|
__all__ = ["DTOType_reflection", "CLITool_reflection", "DTO_reflection", "DTO__get_isSpreadsheet", "DTO__get_isText", "DTO__get_isCLITool", "DTO__AsSpreadsheet", "DTO__AsText", "DTO__AsCLITool", "Contract_reflection"]
|
|
153
153
|
|