arctrl 3.0.0b11__tar.gz → 3.0.0b13__tar.gz

{arctrl-3.0.0b11 → arctrl-3.0.0b13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: arctrl
-Version: 3.0.0b11
+Version: 3.0.0b13
 Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
 License-File: LICENSE
 Keywords: arc,annotated research context,isa,research data,multi platform
@@ -39,7 +39,7 @@ Description-Content-Type: text/markdown
 
 ```fsharp
 #r "nuget: ARCtrl"
-``` 
+```
 
 ```bash
 <PackageReference Include="ARCtrl" Version="1.1.0" />
@@ -75,6 +75,8 @@ Documentation can be found [here](https://nfdi4plants.github.io/nfdi4plants.know
 
 #### Local Setup
 
+##### Windows
+
 On windows you can use the `setup.cmd` to run the following steps automatically!
 
 1. Setup dotnet tools
@@ -83,11 +85,11 @@ On windows you can use the `setup.cmd` to run the following steps automatically!
 
 
 2. Install NPM dependencies
-   
+
     `npm install`
 
 3. Setup python environment
-    
+
     `py -m venv .venv`
 
 4. Install [uv](https://docs.astral.sh/uv/) and dependencies
@@ -98,6 +100,31 @@ On windows you can use the `setup.cmd` to run the following steps automatically!
 
 Verify correct setup with `./build.cmd runtests` ✨
 
+##### Linux / macOS
+
+On unix you can use the `setup.sh` to run the following steps automatically!
+
+1. Setup dotnet tools
+
+   `dotnet tool restore`
+
+
+2. Install NPM dependencies
+
+    `npm install`
+
+3. Setup python environment
+
+    `python -m venv .venv`
+
+4. Install [uv](https://docs.astral.sh/uv/) and dependencies
+
+   1. `.venv/bin/python -m pip install -U pip setuptools`
+   2. `.venv/bin/python -m pip install uv`
+   3. `.venv/bin/python -m uv pip install -r pyproject.toml --group dev`
+
+Verify correct setup with `bash build.sh runtests` ✨
+
 ## Branding
 
 Feel free to reference `ARCtrl` on slides or elsewhere using our logos:

{arctrl-3.0.0b11 → arctrl-3.0.0b13}/README.md

@@ -19,7 +19,7 @@
 
 ```fsharp
 #r "nuget: ARCtrl"
-``` 
+```
 
 ```bash
 <PackageReference Include="ARCtrl" Version="1.1.0" />
@@ -55,6 +55,8 @@ Documentation can be found [here](https://nfdi4plants.github.io/nfdi4plants.know
 
 #### Local Setup
 
+##### Windows
+
 On windows you can use the `setup.cmd` to run the following steps automatically!
 
 1. Setup dotnet tools
@@ -63,11 +65,11 @@ On windows you can use the `setup.cmd` to run the following steps automatically!
 
 
 2. Install NPM dependencies
-   
+
     `npm install`
 
 3. Setup python environment
-    
+
     `py -m venv .venv`
 
 4. Install [uv](https://docs.astral.sh/uv/) and dependencies
@@ -78,6 +80,31 @@ On windows you can use the `setup.cmd` to run the following steps automatically!
 
 Verify correct setup with `./build.cmd runtests` ✨
 
+##### Linux / macOS
+
+On unix you can use the `setup.sh` to run the following steps automatically!
+
+1. Setup dotnet tools
+
+   `dotnet tool restore`
+
+
+2. Install NPM dependencies
+
+    `npm install`
+
+3. Setup python environment
+
+    `python -m venv .venv`
+
+4. Install [uv](https://docs.astral.sh/uv/) and dependencies
+
+   1. `.venv/bin/python -m pip install -U pip setuptools`
+   2. `.venv/bin/python -m pip install uv`
+   3. `.venv/bin/python -m uv pip install -r pyproject.toml --group dev`
+
+Verify correct setup with `bash build.sh runtests` ✨
+
 ## Branding
 
 Feel free to reference `ARCtrl` on slides or elsewhere using our logos:

{arctrl-3.0.0b11 → arctrl-3.0.0b13}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "arctrl"
-version = "3.0.0b11"
+version = "3.0.0b13"
 description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
 authors = [
     { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },

arctrl-3.0.0b13/src/ARCtrl/py/CWL/cwlprocessing_unit.py

@@ -0,0 +1,25 @@
+from typing import Any
+from ..fable_modules.fable_library.reflection import (TypeInfo, union_type)
+from ..fable_modules.fable_library.types import (Array, Union)
+from .tool_description import CWLToolDescription_reflection
+from .workflow_description import CWLWorkflowDescription_reflection
+
+def _expr519() -> TypeInfo:
+    return union_type("ARCtrl.CWL.CWLProcessingUnit", [], CWLProcessingUnit, lambda: [[("Item", CWLToolDescription_reflection())], [("Item", CWLWorkflowDescription_reflection())]])
+
+
+class CWLProcessingUnit(Union):
+    def __init__(self, tag: int, *fields: Any) -> None:
+        super().__init__()
+        self.tag: int = tag or 0
+        self.fields: Array[Any] = list(fields)
+
+    @staticmethod
+    def cases() -> list[str]:
+        return ["CommandLineTool", "Workflow"]
+
+
+CWLProcessingUnit_reflection = _expr519
+
+__all__ = ["CWLProcessingUnit_reflection"]
+

{arctrl-3.0.0b11 → arctrl-3.0.0b13}/src/ARCtrl/py/CWL/cwltypes.py

@@ -5,8 +5,9 @@ from ..fable_modules.dynamic_obj.dynamic_obj import (DynamicObj, DynamicObj_refl
 from ..fable_modules.dynamic_obj.dyn_obj import set_property
 from ..fable_modules.fable_library.reflection import (TypeInfo, class_type, string_type, option_type, bool_type, record_type, union_type, array_type)
 from ..fable_modules.fable_library.types import (Record, Array, Union, FSharpRef)
+from ..fable_modules.fable_library.util import identity_hash
 
-def _expr3322() -> TypeInfo:
+def _expr495() -> TypeInfo:
     return class_type("ARCtrl.CWL.FileInstance", None, FileInstance, DynamicObj_reflection())
 
 
@@ -15,14 +16,22 @@ class FileInstance(DynamicObj):
         super().__init__()
         pass
 
+    def __hash__(self, __unit: None=None) -> int:
+        this: FileInstance = self
+        return identity_hash(this.DeepCopyProperties())
 
-FileInstance_reflection = _expr3322
+    def __eq__(self, o: Any=None) -> bool:
+        this: FileInstance = self
+        return this.StructurallyEquals(o) if isinstance(o, FileInstance) else False
+
+
+FileInstance_reflection = _expr495
 
 def FileInstance__ctor(__unit: None=None) -> FileInstance:
     return FileInstance(__unit)
 
 
-def _expr3323() -> TypeInfo:
+def _expr496() -> TypeInfo:
     return class_type("ARCtrl.CWL.DirectoryInstance", None, DirectoryInstance, DynamicObj_reflection())
 
 
@@ -31,14 +40,22 @@ class DirectoryInstance(DynamicObj):
         super().__init__()
         pass
 
+    def __eq__(self, o: Any=None) -> bool:
+        this: DirectoryInstance = self
+        return this.StructurallyEquals(o) if isinstance(o, DirectoryInstance) else False
+
+    def __hash__(self, __unit: None=None) -> int:
+        this: DirectoryInstance = self
+        return identity_hash(this.DeepCopyProperties())
+
 
-DirectoryInstance_reflection = _expr3323
+DirectoryInstance_reflection = _expr496
 
 def DirectoryInstance__ctor(__unit: None=None) -> DirectoryInstance:
     return DirectoryInstance(__unit)
 
 
-def _expr3324() -> TypeInfo:
+def _expr497() -> TypeInfo:
     return record_type("ARCtrl.CWL.DirentInstance", [], DirentInstance, lambda: [("Entry", string_type), ("Entryname", option_type(string_type)), ("Writable", option_type(bool_type))])
 
 
@@ -48,9 +65,9 @@ class DirentInstance(Record):
     Entryname: str | None
     Writable: bool | None
 
-DirentInstance_reflection = _expr3324
+DirentInstance_reflection = _expr497
 
-def _expr3325() -> TypeInfo:
+def _expr498() -> TypeInfo:
     return union_type("ARCtrl.CWL.CWLType", [], CWLType, lambda: [[("Item", FileInstance_reflection())], [("Item", DirectoryInstance_reflection())], [("Item", DirentInstance_reflection())], [], [], [], [], [], [], [], [], [("Item", CWLType_reflection())]])
 
 
@@ -65,9 +82,17 @@ class CWLType(Union):
         return ["File", "Directory", "Dirent", "String", "Int", "Long", "Float", "Double", "Boolean", "Stdout", "Null", "Array"]
 
 
-CWLType_reflection = _expr3325
+CWLType_reflection = _expr498
+
+def CWLType_file(__unit: None=None) -> CWLType:
+    return CWLType(0, FileInstance__ctor())
+
+
+def CWLType_directory(__unit: None=None) -> CWLType:
+    return CWLType(1, DirectoryInstance__ctor())
+
 
-def _expr3326() -> TypeInfo:
+def _expr500() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputRecordSchema", None, InputRecordSchema, DynamicObj_reflection())
 
 
@@ -77,13 +102,13 @@ class InputRecordSchema(DynamicObj):
         pass
 
 
-InputRecordSchema_reflection = _expr3326
+InputRecordSchema_reflection = _expr500
 
 def InputRecordSchema__ctor(__unit: None=None) -> InputRecordSchema:
     return InputRecordSchema(__unit)
 
 
-def _expr3327() -> TypeInfo:
+def _expr501() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputEnumSchema", None, InputEnumSchema, DynamicObj_reflection())
 
 
@@ -93,13 +118,13 @@ class InputEnumSchema(DynamicObj):
         pass
 
 
-InputEnumSchema_reflection = _expr3327
+InputEnumSchema_reflection = _expr501
 
 def InputEnumSchema__ctor(__unit: None=None) -> InputEnumSchema:
     return InputEnumSchema(__unit)
 
 
-def _expr3328() -> TypeInfo:
+def _expr502() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputArraySchema", None, InputArraySchema, DynamicObj_reflection())
 
 
@@ -109,13 +134,13 @@ class InputArraySchema(DynamicObj):
         pass
 
 
-InputArraySchema_reflection = _expr3328
+InputArraySchema_reflection = _expr502
 
 def InputArraySchema__ctor(__unit: None=None) -> InputArraySchema:
     return InputArraySchema(__unit)
 
 
-def _expr3329() -> TypeInfo:
+def _expr503() -> TypeInfo:
     return class_type("ARCtrl.CWL.SchemaDefRequirementType", None, SchemaDefRequirementType, DynamicObj_reflection())
 
 
@@ -124,17 +149,17 @@ class SchemaDefRequirementType(DynamicObj):
         super().__init__()
         this: FSharpRef[SchemaDefRequirementType] = FSharpRef(None)
         this.contents = self
-        self.init_004047: int = 1
+        self.init_004069: int = 1
         set_property("types", definitions, this.contents)
 
 
-SchemaDefRequirementType_reflection = _expr3329
+SchemaDefRequirementType_reflection = _expr503
 
 def SchemaDefRequirementType__ctor_541DA560(types: Any=None, definitions: Any=None) -> SchemaDefRequirementType:
     return SchemaDefRequirementType(types, definitions)
 
 
-def _expr3330() -> TypeInfo:
+def _expr504() -> TypeInfo:
     return record_type("ARCtrl.CWL.SoftwarePackage", [], SoftwarePackage, lambda: [("Package", string_type), ("Version", option_type(array_type(string_type))), ("Specs", option_type(array_type(string_type)))])
 
 
@@ -144,7 +169,7 @@ class SoftwarePackage(Record):
     Version: Array[str] | None
     Specs: Array[str] | None
 
-SoftwarePackage_reflection = _expr3330
+SoftwarePackage_reflection = _expr504
 
-__all__ = ["FileInstance_reflection", "DirectoryInstance_reflection", "DirentInstance_reflection", "CWLType_reflection", "InputRecordSchema_reflection", "InputEnumSchema_reflection", "InputArraySchema_reflection", "SchemaDefRequirementType_reflection", "SoftwarePackage_reflection"]
+__all__ = ["FileInstance_reflection", "DirectoryInstance_reflection", "DirentInstance_reflection", "CWLType_reflection", "CWLType_file", "CWLType_directory", "InputRecordSchema_reflection", "InputEnumSchema_reflection", "InputArraySchema_reflection", "SchemaDefRequirementType_reflection", "SoftwarePackage_reflection"]