arctrl 3.0.0a4__tar.gz → 3.0.0b1__tar.gz

{arctrl-3.0.0a4 → arctrl-3.0.0b1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: arctrl
-Version: 3.0.0a4
+Version: 3.0.0b1
 Summary: Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.
 Keywords: arc,annotated research context,isa,research data,multi platform
 Author: Heinrich Lukas Weil
@@ -108,12 +108,19 @@ Measured on 13th Gen Intel(R) Core(TM) i7-13800H
 
 | Name | Description | FSharp Time (ms) | JavaScript Time (ms) | Python Time (ms) |
 | --- | --- | --- | --- | --- |
-| Table_GetHashCode | From a table with 1 column and 10000 rows, retrieve the Hash Code |  2 ± 0 | 9 ± 7 | 133 ± 7 |
-| Table_AddRows | Add 10000 rows to a table with 4 columns. |  40 ± 9 | 20 ± 8 | 309 ± 26 |
-| Table_fillMissingCells | For a table 6 columns and 20000 rows, where each row has one missing value, fill those values with default values. | 55 ± 31 | 101 ± 11 | 3375 ± 221 |
-| Table_ToJson | Serialize a table with 5 columns and 10000 rows to json. |  1027 ± 200 | 293 ± 56 | 17990 ± 1482 |
-| Table_ToCompressedJson | Serialize a table with 5 columns and 10000 rows to compressed json. |  216 ± 19 |  4552 ± 326 | 6188 ± 839 |
-| Assay_toJson | Parse an assay with one table with 10000 rows and 6 columns to json |  856 ± 42 | 271 ± 55 | 19278 ± 1289 |
-| Study_FromWorkbook | Parse a workbook with one study with 10000 rows and 6 columns to an ArcStudy |  84 ± 29 | 96 ± 12 | 1787 ± 1410 |
-| Investigation_ToWorkbook_ManyStudies | Parse an investigation with 1500 studies to a workbook |  387 ± 71 | 442 ± 61 | 6305 ± 660 |
-
+| Table_GetHashCode | From a table with 1 column and 10000 rows, retrieve the Hash Code | 0 ± 0 | 0 ± 1 | 91 ± 12 |
+| Table_AddDistinctRows | Add 10000 distinct rows to a table with 4 columns. | 13 ± 2 | 14 ± 4 | 119 ± 12 |
+| Table_AddIdenticalRows | Add 10000 identical rows to a table with 4 columns. | 6 ± 2 | 6 ± 1 | 104 ± 6 |
+| Table_AddColumnsWithDistinctValues | Add 4 columns with 10000 distinct values each. | 8 ± 3 | 10 ± 1 | 53 ± 1 |
+| Table_AddColumnsWithIdenticalValues | Add 4 columns with 10000 identical values each. | 5 ± 1 | 4 ± 0 | 47 ± 1 |
+| Table_fillMissingCells | For a table 6 columns and 20000 rows, where each row has one missing value, fill those values with default values. | 0 ± 0 |  2 ± 1 | 6 ± 4 |
+| Table_ToJson | Serialize a table with 5 columns and 10000 rows to json, with 3 fixed and 2 variable columns. | 227 ± 64 | 68 ± 18 | 7851 ± 1411 |
+| Table_ToCompressedJson | Serialize a table with 5 columns and 10000 rows to compressed json, with 3 fixed and 2 variable columns. | 147 ± 15 | 2878 ± 135 | 6303 ± 1798 |
+| Assay_toJson | Parse an assay with one table with 10000 rows and 6 columns to json, with 3 fixed and 3 variable columns. | 330 ± 36 | 88 ± 9 | 12644 ± 550 |
+| Assay_fromJson | Parse an assay with one table with 10000 rows and 6 columns from json, with 3 fixed and 3 variable columns. | 355 ± 66 | 61 ± 6 | 6499 ± 1068 |
+| Assay_toISAJson | Parse an assay with one table with 10000 rows and 6 columns to json, with 3 fixed and 3 variable columns | 487 ± 36 | 959 ± 36 | 15618 ± 482 |
+| Assay_fromISAJson | Parse an assay with one table with 10000 rows and 6 columns from json, with 3 fixed and 3 variable columns | 359 ± 29 | 706 ± 46 | 9587 ± 621 |
+| Study_FromWorkbook | Parse a workbook with one study with 10000 rows and 6 columns to an ArcStudy | 29 ± 14 | 62 ± 5 | 818 ± 36 |
+| Investigation_ToWorkbook_ManyStudies | Parse an investigation with 1500 studies to a workbook | 240 ± 31 | 284 ± 24 | 3657 ± 199 |
+| Investigation_FromWorkbook_ManyStudies | Parse a workbook with 1500 studies to an ArcInvestigation | 127 ± 20 | 498 ± 21 | 9469 ± 412 |
+| ARC_ToROCrate | Parse an ARC with one assay with 10000 rows and 6 columns to a RO-Crate metadata file. | 1431 ± 99 | 3526 ± 264 | 61224 ± 728 |

{arctrl-3.0.0a4 → arctrl-3.0.0b1}/README.md

@@ -90,11 +90,19 @@ Measured on 13th Gen Intel(R) Core(TM) i7-13800H
 
 | Name | Description | FSharp Time (ms) | JavaScript Time (ms) | Python Time (ms) |
 | --- | --- | --- | --- | --- |
-| Table_GetHashCode | From a table with 1 column and 10000 rows, retrieve the Hash Code |  2 ± 0 | 9 ± 7 | 133 ± 7 |
-| Table_AddRows | Add 10000 rows to a table with 4 columns. |  40 ± 9 | 20 ± 8 | 309 ± 26 |
-| Table_fillMissingCells | For a table 6 columns and 20000 rows, where each row has one missing value, fill those values with default values. | 55 ± 31 | 101 ± 11 | 3375 ± 221 |
-| Table_ToJson | Serialize a table with 5 columns and 10000 rows to json. |  1027 ± 200 | 293 ± 56 | 17990 ± 1482 |
-| Table_ToCompressedJson | Serialize a table with 5 columns and 10000 rows to compressed json. |  216 ± 19 |  4552 ± 326 | 6188 ± 839 |
-| Assay_toJson | Parse an assay with one table with 10000 rows and 6 columns to json |  856 ± 42 | 271 ± 55 | 19278 ± 1289 |
-| Study_FromWorkbook | Parse a workbook with one study with 10000 rows and 6 columns to an ArcStudy |  84 ± 29 | 96 ± 12 | 1787 ± 1410 |
-| Investigation_ToWorkbook_ManyStudies | Parse an investigation with 1500 studies to a workbook |  387 ± 71 | 442 ± 61 | 6305 ± 660 |
+| Table_GetHashCode | From a table with 1 column and 10000 rows, retrieve the Hash Code | 0 ± 0 | 0 ± 1 | 91 ± 12 |
+| Table_AddDistinctRows | Add 10000 distinct rows to a table with 4 columns. | 13 ± 2 | 14 ± 4 | 119 ± 12 |
+| Table_AddIdenticalRows | Add 10000 identical rows to a table with 4 columns. | 6 ± 2 | 6 ± 1 | 104 ± 6 |
+| Table_AddColumnsWithDistinctValues | Add 4 columns with 10000 distinct values each. | 8 ± 3 | 10 ± 1 | 53 ± 1 |
+| Table_AddColumnsWithIdenticalValues | Add 4 columns with 10000 identical values each. | 5 ± 1 | 4 ± 0 | 47 ± 1 |
+| Table_fillMissingCells | For a table 6 columns and 20000 rows, where each row has one missing value, fill those values with default values. | 0 ± 0 |  2 ± 1 | 6 ± 4 |
+| Table_ToJson | Serialize a table with 5 columns and 10000 rows to json, with 3 fixed and 2 variable columns. | 227 ± 64 | 68 ± 18 | 7851 ± 1411 |
+| Table_ToCompressedJson | Serialize a table with 5 columns and 10000 rows to compressed json, with 3 fixed and 2 variable columns. | 147 ± 15 | 2878 ± 135 | 6303 ± 1798 |
+| Assay_toJson | Parse an assay with one table with 10000 rows and 6 columns to json, with 3 fixed and 3 variable columns. | 330 ± 36 | 88 ± 9 | 12644 ± 550 |
+| Assay_fromJson | Parse an assay with one table with 10000 rows and 6 columns from json, with 3 fixed and 3 variable columns. | 355 ± 66 | 61 ± 6 | 6499 ± 1068 |
+| Assay_toISAJson | Parse an assay with one table with 10000 rows and 6 columns to json, with 3 fixed and 3 variable columns | 487 ± 36 | 959 ± 36 | 15618 ± 482 |
+| Assay_fromISAJson | Parse an assay with one table with 10000 rows and 6 columns from json, with 3 fixed and 3 variable columns | 359 ± 29 | 706 ± 46 | 9587 ± 621 |
+| Study_FromWorkbook | Parse a workbook with one study with 10000 rows and 6 columns to an ArcStudy | 29 ± 14 | 62 ± 5 | 818 ± 36 |
+| Investigation_ToWorkbook_ManyStudies | Parse an investigation with 1500 studies to a workbook | 240 ± 31 | 284 ± 24 | 3657 ± 199 |
+| Investigation_FromWorkbook_ManyStudies | Parse a workbook with 1500 studies to an ArcInvestigation | 127 ± 20 | 498 ± 21 | 9469 ± 412 |
+| ARC_ToROCrate | Parse an ARC with one assay with 10000 rows and 6 columns to a RO-Crate metadata file. | 1431 ± 99 | 3526 ± 264 | 61224 ± 728 |

{arctrl-3.0.0a4 → arctrl-3.0.0b1}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "arctrl"
-version = "3.0.0a4"
+version = "3.0.0b1"
 description = "Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems."
 authors = [
     { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },

{arctrl-3.0.0a4 → arctrl-3.0.0b1}/src/ARCtrl/py/CWL/cwltypes.py

@@ -6,7 +6,7 @@ from ..fable_modules.dynamic_obj.dyn_obj import set_property
 from ..fable_modules.fable_library.reflection import (TypeInfo, class_type, string_type, option_type, bool_type, record_type, union_type, array_type)
 from ..fable_modules.fable_library.types import (Record, Array, Union, FSharpRef)
 
-def _expr3008() -> TypeInfo:
+def _expr3027() -> TypeInfo:
     return class_type("ARCtrl.CWL.FileInstance", None, FileInstance, DynamicObj_reflection())
 
 
@@ -16,13 +16,13 @@ class FileInstance(DynamicObj):
         pass
 
 
-FileInstance_reflection = _expr3008
+FileInstance_reflection = _expr3027
 
 def FileInstance__ctor(__unit: None=None) -> FileInstance:
     return FileInstance(__unit)
 
 
-def _expr3009() -> TypeInfo:
+def _expr3028() -> TypeInfo:
     return class_type("ARCtrl.CWL.DirectoryInstance", None, DirectoryInstance, DynamicObj_reflection())
 
 
@@ -32,13 +32,13 @@ class DirectoryInstance(DynamicObj):
         pass
 
 
-DirectoryInstance_reflection = _expr3009
+DirectoryInstance_reflection = _expr3028
 
 def DirectoryInstance__ctor(__unit: None=None) -> DirectoryInstance:
     return DirectoryInstance(__unit)
 
 
-def _expr3010() -> TypeInfo:
+def _expr3029() -> TypeInfo:
     return record_type("ARCtrl.CWL.DirentInstance", [], DirentInstance, lambda: [("Entry", string_type), ("Entryname", option_type(string_type)), ("Writable", option_type(bool_type))])
 
 
@@ -48,9 +48,9 @@ class DirentInstance(Record):
     Entryname: str | None
     Writable: bool | None
 
-DirentInstance_reflection = _expr3010
+DirentInstance_reflection = _expr3029
 
-def _expr3011() -> TypeInfo:
+def _expr3030() -> TypeInfo:
     return union_type("ARCtrl.CWL.CWLType", [], CWLType, lambda: [[("Item", FileInstance_reflection())], [("Item", DirectoryInstance_reflection())], [("Item", DirentInstance_reflection())], [], [], [], [], [], [], [], [], [("Item", CWLType_reflection())]])
 
 
@@ -65,9 +65,9 @@ class CWLType(Union):
         return ["File", "Directory", "Dirent", "String", "Int", "Long", "Float", "Double", "Boolean", "Stdout", "Null", "Array"]
 
 
-CWLType_reflection = _expr3011
+CWLType_reflection = _expr3030
 
-def _expr3012() -> TypeInfo:
+def _expr3031() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputRecordSchema", None, InputRecordSchema, DynamicObj_reflection())
 
 
@@ -77,13 +77,13 @@ class InputRecordSchema(DynamicObj):
         pass
 
 
-InputRecordSchema_reflection = _expr3012
+InputRecordSchema_reflection = _expr3031
 
 def InputRecordSchema__ctor(__unit: None=None) -> InputRecordSchema:
     return InputRecordSchema(__unit)
 
 
-def _expr3013() -> TypeInfo:
+def _expr3032() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputEnumSchema", None, InputEnumSchema, DynamicObj_reflection())
 
 
@@ -93,13 +93,13 @@ class InputEnumSchema(DynamicObj):
         pass
 
 
-InputEnumSchema_reflection = _expr3013
+InputEnumSchema_reflection = _expr3032
 
 def InputEnumSchema__ctor(__unit: None=None) -> InputEnumSchema:
     return InputEnumSchema(__unit)
 
 
-def _expr3014() -> TypeInfo:
+def _expr3033() -> TypeInfo:
     return class_type("ARCtrl.CWL.InputArraySchema", None, InputArraySchema, DynamicObj_reflection())
 
 
@@ -109,13 +109,13 @@ class InputArraySchema(DynamicObj):
         pass
 
 
-InputArraySchema_reflection = _expr3014
+InputArraySchema_reflection = _expr3033
 
 def InputArraySchema__ctor(__unit: None=None) -> InputArraySchema:
     return InputArraySchema(__unit)
 
 
-def _expr3015() -> TypeInfo:
+def _expr3034() -> TypeInfo:
     return class_type("ARCtrl.CWL.SchemaDefRequirementType", None, SchemaDefRequirementType, DynamicObj_reflection())
 
 
@@ -128,13 +128,13 @@ class SchemaDefRequirementType(DynamicObj):
         set_property("types", definitions, this.contents)
 
 
-SchemaDefRequirementType_reflection = _expr3015
+SchemaDefRequirementType_reflection = _expr3034
 
 def SchemaDefRequirementType__ctor_541DA560(types: Any=None, definitions: Any=None) -> SchemaDefRequirementType:
     return SchemaDefRequirementType(types, definitions)
 
 
-def _expr3016() -> TypeInfo:
+def _expr3035() -> TypeInfo:
     return record_type("ARCtrl.CWL.SoftwarePackage", [], SoftwarePackage, lambda: [("Package", string_type), ("Version", option_type(array_type(string_type))), ("Specs", option_type(array_type(string_type)))])
 
 
@@ -144,7 +144,7 @@ class SoftwarePackage(Record):
     Version: Array[str] | None
     Specs: Array[str] | None
 
-SoftwarePackage_reflection = _expr3016
+SoftwarePackage_reflection = _expr3035
 
 __all__ = ["FileInstance_reflection", "DirectoryInstance_reflection", "DirentInstance_reflection", "CWLType_reflection", "InputRecordSchema_reflection", "InputEnumSchema_reflection", "InputArraySchema_reflection", "SchemaDefRequirementType_reflection", "SoftwarePackage_reflection"]