arcquerymodel 3.0.0a2__tar.gz

arcquerymodel-3.0.0a2/LICENSE

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+MIT License
+
+Copyright (c) 2022 DataPLANT
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

arcquerymodel-3.0.0a2/PKG-INFO

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+Metadata-Version: 2.4
+Name: arcquerymodel
+Version: 3.0.0a2
+Summary: Library for graph-based querying of Annotated Research Contexts (ARCs).
+License-File: LICENSE
+Keywords: arc,query,annotated research context,isa,research data,multi platform
+Author: Heinrich Lukas Weil
+Author-email: weil@rptu.de
+Maintainer: Florian Wetzels
+Requires-Python: >=3.11
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Requires-Dist: arctrl (>=3.0.0b15,<4.0.0)
+Project-URL: Repository, https://github.com/nfdi4plants/ARCtrl.Querymodel
+Description-Content-Type: text/markdown
+
+# ARCtrl.Querymodel
+
+> [!NOTE]  
+> Filesystem Access has been implemented in ARCtrl since v2.3.0, even transpilable to JS and Python. ARCtrl.NET is therefore deprecated and this repository hosts only ARCtrl.Querymodel.
+
+
+<a href="https://www.nuget.org/packages/ARCtrl.Querymodel/"><img alt="Nuget" src="https://img.shields.io/nuget/v/ARCtrl.Querymodel?logo=nuget&color=%234fb3d9"></a>
+
+Adds querying functionality to the core [ARCtrl](https://github.com/nfdi4plants/ARCtrl) package in .NET.
+
+The documentation for the actual functions for manipulating the ARC datamodel can be found [here](https://github.com/nfdi4plants/ARCtrl/tree/main/docs/scripts_fsharp).
+
+## Usage
+
+```fsharp
+open ARCtrl
+open ARCtrl.QueryModel
+open ARCtrl.ISA
+
+let i = ArcInvestigation("Dummy Investigation")
+
+i.ArcTables.Values().WithName("Dummy Header").First.ValueText
+
+i.GetAssay("Dummy Assay").LastSamples
+```
+
+## Development
+
+#### Requirements
+
+- [.NET SDK](https://dotnet.microsoft.com/en-us/download)
+    - verify with `dotnet --version` (Tested with 7.0.306)
+
+#### Local Setup
+
+- Setup dotnet tools `dotnet tool restore`
+
+- Verify correct setup with  `./build.cmd runtests` ✨

arcquerymodel-3.0.0a2/README.md

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+# ARCtrl.Querymodel
+
+> [!NOTE]  
+> Filesystem Access has been implemented in ARCtrl since v2.3.0, even transpilable to JS and Python. ARCtrl.NET is therefore deprecated and this repository hosts only ARCtrl.Querymodel.
+
+
+<a href="https://www.nuget.org/packages/ARCtrl.Querymodel/"><img alt="Nuget" src="https://img.shields.io/nuget/v/ARCtrl.Querymodel?logo=nuget&color=%234fb3d9"></a>
+
+Adds querying functionality to the core [ARCtrl](https://github.com/nfdi4plants/ARCtrl) package in .NET.
+
+The documentation for the actual functions for manipulating the ARC datamodel can be found [here](https://github.com/nfdi4plants/ARCtrl/tree/main/docs/scripts_fsharp).
+
+## Usage
+
+```fsharp
+open ARCtrl
+open ARCtrl.QueryModel
+open ARCtrl.ISA
+
+let i = ArcInvestigation("Dummy Investigation")
+
+i.ArcTables.Values().WithName("Dummy Header").First.ValueText
+
+i.GetAssay("Dummy Assay").LastSamples
+```
+
+## Development
+
+#### Requirements
+
+- [.NET SDK](https://dotnet.microsoft.com/en-us/download)
+    - verify with `dotnet --version` (Tested with 7.0.306)
+
+#### Local Setup
+
+- Setup dotnet tools `dotnet tool restore`
+
+- Verify correct setup with  `./build.cmd runtests` ✨

arcquerymodel-3.0.0a2/pyproject.toml

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+[project]
+name = "arcquerymodel"
+version = "3.0.0a2"
+description = "Library for graph-based querying of Annotated Research Contexts (ARCs)."
+authors = [
+    { name = "Heinrich Lukas Weil", email = "weil@rptu.de" },
+]
+requires-python = ">=3.11"
+readme = "README.md"
+maintainers = [{ name = "Florian Wetzels" }]
+keywords = [
+    "arc",
+    "query",
+    "annotated research context",
+    "isa",
+    "research data",
+    "multi platform",
+]
+dependencies = [
+    "arctrl>= 3.0.0b15, <4.0.0"
+]
+
+[project.urls]
+Repository = "https://github.com/nfdi4plants/ARCtrl.Querymodel"
+
+[dependency-groups]
+dev = [
+    "pytest>=8.1.1,<9",
+    "twine>=4.0.2"
+]
+
+[tool.poetry]
+include = [
+    "src/ARCtrl.Querymodel/py/**/*.py"
+]
+packages = [
+    { include = "**/*.py", from = "src/ARCtrl.Querymodel/", to = "arcquerymodel" }
+]
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"

arcquerymodel-3.0.0a2/src/ARCtrl.QueryModel/__init__.py

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+from __future__ import annotations
+from collections.abc import Callable
+from typing import Any
+
+#export { indexGraph } from './ts/ProcessCore/KnowledgeGraph.js'
+#export { ProcessSequence, QLabProcess, IONode } from './ts/ProcessCore/ProcessCollection.js'
+#export { QLabProtocol } from './ts/ProcessCore/QLabProtocol.js'
+#export { QValueCollection, IOQValueCollection } from './ts/ProcessCore/ValueCollection.js'
+#export { QPropertyValue } from './ts/ProcessCore/PropertyValue.js'
+
+from .py.ProcessCore.process_collection import QGraph, ProcessSequence, QLabProcess, QLabProtocol, IONode
+from .py.ProcessCore.value_collection import QValueCollection, IOQValueCollection
+from .py.ProcessCore.property_value import QPropertyValue

arcquerymodel-3.0.0a2/src/ARCtrl.QueryModel/py/ProcessCore/knowledge_graph.py

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+from __future__ import annotations
+from ..fable_modules.arctrl_rocrate.ldcontext import LDContext
+from ..fable_modules.arctrl_rocrate.rocrate_context import (init_bioschemas_context, init_v1_2)
+
+object_of: str = "objectOf"
+
+result_of: str = "resultOf"
+
+context: LDContext = LDContext(None, [init_bioschemas_context(), init_v1_2()])
+
+__all__ = ["object_of", "result_of", "context"]
+