architeuthis 0.1.4__tar.gz

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  1. architeuthis-0.1.4/.gitattributes +3 -0
  2. architeuthis-0.1.4/.github/workflows/publish.yml +60 -0
  3. architeuthis-0.1.4/.gitignore +208 -0
  4. architeuthis-0.1.4/CHANGELOG.md +58 -0
  5. architeuthis-0.1.4/LICENSE +674 -0
  6. architeuthis-0.1.4/PKG-INFO +49 -0
  7. architeuthis-0.1.4/README.md +4 -0
  8. architeuthis-0.1.4/ROADMAP.md +22 -0
  9. architeuthis-0.1.4/architeuthis/LICENSE +674 -0
  10. architeuthis-0.1.4/architeuthis/README.md +4 -0
  11. architeuthis-0.1.4/architeuthis/__init__.py +27 -0
  12. architeuthis-0.1.4/architeuthis/assets/countries-coastline-1km.geo.json +250 -0
  13. architeuthis-0.1.4/architeuthis/assets/dashExtensions_default.js +43 -0
  14. architeuthis-0.1.4/architeuthis/assets/icons/ic--sharp-keyboard-arrow-up.png +0 -0
  15. architeuthis-0.1.4/architeuthis/assets/icons/material-symbols-light--target.png +0 -0
  16. architeuthis-0.1.4/architeuthis/assets/icons/mdi--target.png +0 -0
  17. architeuthis-0.1.4/architeuthis/assets/icons/sensor.png +0 -0
  18. architeuthis-0.1.4/architeuthis/assets/icons/solar--add-circle-line-duotone.png +0 -0
  19. architeuthis-0.1.4/architeuthis/assets/icons/wi--thermometer-internal.png +0 -0
  20. architeuthis-0.1.4/architeuthis/assets/img/Logo_Neoline_Grand_Picto_RVB.png +0 -0
  21. architeuthis-0.1.4/architeuthis/assets/img/Logo_Neoline_Grand_Picto_W.png +0 -0
  22. architeuthis-0.1.4/architeuthis/assets/marker-tooltip.js +48 -0
  23. architeuthis-0.1.4/architeuthis/assets/noaa_overlay.png +0 -0
  24. architeuthis-0.1.4/architeuthis/assets/style.css +8 -0
  25. architeuthis-0.1.4/architeuthis/common.py +255 -0
  26. architeuthis-0.1.4/architeuthis/core.py +636 -0
  27. architeuthis-0.1.4/architeuthis/environment.py +91 -0
  28. architeuthis-0.1.4/architeuthis/forecast.py +726 -0
  29. architeuthis-0.1.4/architeuthis/icebergs.py +220 -0
  30. architeuthis-0.1.4/architeuthis/modeling/__init__.py +19 -0
  31. architeuthis-0.1.4/architeuthis/modeling/black_box.py +210 -0
  32. architeuthis-0.1.4/architeuthis/modeling/fitting.py +418 -0
  33. architeuthis-0.1.4/architeuthis/modeling/interpolation.py +259 -0
  34. architeuthis-0.1.4/architeuthis/modeling/interpolation_unstructured.py +250 -0
  35. architeuthis-0.1.4/architeuthis/modeling/splines/__init__.py +15 -0
  36. architeuthis-0.1.4/architeuthis/modeling/splines/bezier.py +88 -0
  37. architeuthis-0.1.4/architeuthis/modeling/splines/hermite.py +156 -0
  38. architeuthis-0.1.4/architeuthis/modeling/surrogate_model.py +174 -0
  39. architeuthis-0.1.4/architeuthis/modeling/test_modeling/dataset_temperature.py +25 -0
  40. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_black_box_extended.py +341 -0
  41. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_fit_model.py +220 -0
  42. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_fit_model_fit_type.py +57 -0
  43. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_fit_model_norm_type.py +55 -0
  44. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_fit_model_weighting.py +39 -0
  45. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_fitted_model.py +26 -0
  46. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_interpolate_model.py +45 -0
  47. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_interpolate_model_ND.py +56 -0
  48. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_interpolation_extended.py +314 -0
  49. architeuthis-0.1.4/architeuthis/modeling/test_modeling/test_optimize_through_interpolator.py +87 -0
  50. architeuthis-0.1.4/architeuthis/numpy/__init__.py +37 -0
  51. architeuthis-0.1.4/architeuthis/numpy/arithmetic_dyadic.py +83 -0
  52. architeuthis-0.1.4/architeuthis/numpy/arithmetic_monadic.py +87 -0
  53. architeuthis-0.1.4/architeuthis/numpy/array.py +441 -0
  54. architeuthis-0.1.4/architeuthis/numpy/calculus.py +286 -0
  55. architeuthis-0.1.4/architeuthis/numpy/conditionals.py +61 -0
  56. architeuthis-0.1.4/architeuthis/numpy/derivative_discrete_derivations/quadratic.py +101 -0
  57. architeuthis-0.1.4/architeuthis/numpy/derivative_discrete_derivations/quadratic_2nd_derivative.py +106 -0
  58. architeuthis-0.1.4/architeuthis/numpy/determine_type.py +84 -0
  59. architeuthis-0.1.4/architeuthis/numpy/finite_difference_operators.py +100 -0
  60. architeuthis-0.1.4/architeuthis/numpy/integrate.py +396 -0
  61. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete.py +829 -0
  62. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/cubic_spline_integration.py +71 -0
  63. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/cubic_spline_interpolant_derivation.py +67 -0
  64. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/discrete_squared_curvature_derivation_bernstein.py +156 -0
  65. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/discrete_squared_curvature_derivation_hybrid.py +87 -0
  66. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/discrete_squared_curvature_derivation_lagrange.py +124 -0
  67. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/discrete_squared_curvature_derivation_simpson_bernstein.py +145 -0
  68. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/discrete_squared_curvature_derivation_subgradient_softplus.py +48 -0
  69. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/discrete_squared_curvature_display_spectral_convergence.py +54 -0
  70. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/simpson_backward_interpolant_derivation.py +61 -0
  71. architeuthis-0.1.4/architeuthis/numpy/integrate_discrete_derivations/simpson_forward_interpolant_derivation.py +61 -0
  72. architeuthis-0.1.4/architeuthis/numpy/interpolate.py +271 -0
  73. architeuthis-0.1.4/architeuthis/numpy/linalg.py +198 -0
  74. architeuthis-0.1.4/architeuthis/numpy/linalg_top_level.py +87 -0
  75. architeuthis-0.1.4/architeuthis/numpy/logicals.py +88 -0
  76. architeuthis-0.1.4/architeuthis/numpy/rotations.py +188 -0
  77. architeuthis-0.1.4/architeuthis/numpy/spacing.py +114 -0
  78. architeuthis-0.1.4/architeuthis/numpy/surrogate_model_tools.py +296 -0
  79. architeuthis-0.1.4/architeuthis/numpy/test_numpy/README.md +11 -0
  80. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_all_operations_run.py +171 -0
  81. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_arithmetic.py +38 -0
  82. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_array.py +360 -0
  83. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_calculus.py +24 -0
  84. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_conditionals.py +28 -0
  85. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_determine_type.py +62 -0
  86. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_finite_difference_operators.py +41 -0
  87. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_integrate_discrete_intervals.py +354 -0
  88. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_interpolate.py +168 -0
  89. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_linalg.py +25 -0
  90. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_linalg_extended.py +335 -0
  91. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_linalg_top_level.py +52 -0
  92. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_logicals.py +13 -0
  93. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_logicals_extended.py +289 -0
  94. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_rotations.py +56 -0
  95. architeuthis-0.1.4/architeuthis/numpy/test_numpy/test_surrogate_model_tools.py +35 -0
  96. architeuthis-0.1.4/architeuthis/numpy/trig.py +50 -0
  97. architeuthis-0.1.4/architeuthis/optimization/__init__.py +14 -0
  98. architeuthis-0.1.4/architeuthis/optimization/opti.py +1508 -0
  99. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_analytical_wing_aerostructures.py +195 -0
  100. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_analytical_wing_drag_minimization.py +139 -0
  101. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_bounds.py +17 -0
  102. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_extended.py +365 -0
  103. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_hanging_chain.py +84 -0
  104. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_log_transform.py +15 -0
  105. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_optimal_control_manual_integration.py +102 -0
  106. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_parametric_sensitivites.py +53 -0
  107. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_poorly_scaled.py +57 -0
  108. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_rosenbrock.py +106 -0
  109. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_save_load.py +246 -0
  110. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_opti_warm_start.py +33 -0
  111. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_racecar.py +101 -0
  112. architeuthis-0.1.4/architeuthis/optimization/test_optimization/test_racecar_adaptive_ode.py +117 -0
  113. architeuthis-0.1.4/architeuthis/route.py +44 -0
  114. architeuthis-0.1.4/architeuthis/satellite.py +386 -0
  115. architeuthis-0.1.4/architeuthis/tests/test_forecast.py +211 -0
  116. architeuthis-0.1.4/architeuthis/tests/test_vessel.py +109 -0
  117. architeuthis-0.1.4/architeuthis/toolbox/__init__.py +0 -0
  118. architeuthis-0.1.4/architeuthis/toolbox/assets/dashExtensions_default.js +43 -0
  119. architeuthis-0.1.4/architeuthis/toolbox/chart_utils.py +10 -0
  120. architeuthis-0.1.4/architeuthis/toolbox/geo_utils.py +516 -0
  121. architeuthis-0.1.4/architeuthis/toolbox/inspect_tools.py +582 -0
  122. architeuthis-0.1.4/architeuthis/toolbox/os_utils.py +108 -0
  123. architeuthis-0.1.4/architeuthis/toolbox/plot_utils.py +248 -0
  124. architeuthis-0.1.4/architeuthis/toolbox/regex_utils.py +122 -0
  125. architeuthis-0.1.4/architeuthis/toolbox/string_formatting.py +334 -0
  126. architeuthis-0.1.4/architeuthis/toolbox/windy_colormaps.py +85 -0
  127. architeuthis-0.1.4/architeuthis/ui.py +1051 -0
  128. architeuthis-0.1.4/architeuthis/vessel.py +113 -0
  129. architeuthis-0.1.4/architeuthis/wrappers/copernicusmarine_wrapper.py +7 -0
  130. architeuthis-0.1.4/architeuthis/wrappers/eumdac_wrapper.py +37 -0
  131. architeuthis-0.1.4/architeuthis/wrappers/herbie_wrapper.py +113 -0
  132. architeuthis-0.1.4/architeuthis/wrappers/json_wrapper.py +178 -0
  133. architeuthis-0.1.4/architeuthis.egg-info/PKG-INFO +49 -0
  134. architeuthis-0.1.4/architeuthis.egg-info/SOURCES.txt +144 -0
  135. architeuthis-0.1.4/architeuthis.egg-info/dependency_links.txt +1 -0
  136. architeuthis-0.1.4/architeuthis.egg-info/requires.txt +26 -0
  137. architeuthis-0.1.4/architeuthis.egg-info/scm_file_list.json +141 -0
  138. architeuthis-0.1.4/architeuthis.egg-info/scm_version.json +8 -0
  139. architeuthis-0.1.4/architeuthis.egg-info/top_level.txt +1 -0
  140. architeuthis-0.1.4/environment.yaml +33 -0
  141. architeuthis-0.1.4/examples/assets/dashExtensions_default.js +43 -0
  142. architeuthis-0.1.4/examples/comparison_ascat_models.py +263 -0
  143. architeuthis-0.1.4/examples/short_term_routing.py +522 -0
  144. architeuthis-0.1.4/pyproject.toml +63 -0
  145. architeuthis-0.1.4/requirements.txt +25 -0
  146. architeuthis-0.1.4/setup.cfg +4 -0
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+ *.py text eol=lf
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+ *.md text eol=lf
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+ *.txt text eol=lf
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+ name: Publish Architeuthis to PyPI
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+
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+ on:
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+ push:
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+ tags:
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+ - 'v*'
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+
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+ permissions:
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+ contents: read
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+
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+ jobs:
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+ build:
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+ name: Build distribution package 📦
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+ runs-on: ubuntu-latest
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+
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+ steps:
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+ - name: Checkout source code
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+ uses: actions/checkout@v4
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+ with:
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+ fetch-depth: 0 # full history + tags, required by setuptools-scm
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+
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+ - name: Set up Python
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+ uses: actions/setup-python@v5
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+ with:
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+ python-version: '3.13'
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+
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+ - name: Install build dependencies
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+ run: python -m pip install --upgrade pip build twine
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+
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+ - name: Build wheel and source tarball
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+ run: python -m build --outdir dist/
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+
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+ - name: Check distribution metadata
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+ run: python -m twine check --strict dist/*
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+
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+ - name: Store distribution artifacts
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+ uses: actions/upload-artifact@v4
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+ with:
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+ name: architeuthis-distributions
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+ path: dist/
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+
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+ publish-to-pypi:
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+ name: Publish Python distribution 📦 to PyPI
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+ needs: build
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+ runs-on: ubuntu-latest
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+ environment:
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+ name: pypi
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+ url: https://pypi.org/p/architeuthis
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+ permissions:
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+ id-token: write # MANDATORY for PyPI Trusted Publishing (OIDC)
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+
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+ steps:
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+ - name: Download distribution artifacts
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+ uses: actions/download-artifact@v4
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+ with:
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+ name: architeuthis-distributions
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+ path: dist/
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+
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+ - name: Publish package to PyPI
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+ uses: pypa/gh-action-pypi-publish@release/v1
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+ # Byte-compiled / optimized / DLL files
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+ __pycache__/
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+ *.py[codz]
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+ *$py.class
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+ *.env
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+
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+ # C extensions
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+ *.so
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+
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+ # Distribution / packaging
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+ .Python
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+ build/
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+ develop-eggs/
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+ dist/
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+ downloads/
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+ eggs/
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+ .eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ wheels/
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+ share/python-wheels/
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+ *.egg-info/
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+ .installed.cfg
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+ *.egg
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+ MANIFEST
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+
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+ # PyInstaller
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+ # Usually these files are written by a python script from a template
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+ # before PyInstaller builds the exe, so as to inject date/other infos into it.
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+ *.manifest
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+ *.spec
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+
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+ # Installer logs
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+ pip-log.txt
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+ pip-delete-this-directory.txt
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+
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+ # Unit test / coverage reports
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+ htmlcov/
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+ .tox/
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+ .nox/
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+ .coverage
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+ .coverage.*
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+ .cache
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+ nosetests.xml
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+ coverage.xml
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+ *.cover
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+ *.py.cover
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+ .hypothesis/
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+ .pytest_cache/
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+ cover/
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+
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+ # Translations
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+ *.mo
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+ *.pot
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+
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+ # Django stuff:
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+ *.log
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+ local_settings.py
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+ db.sqlite3
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+ db.sqlite3-journal
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+
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+ # Flask stuff:
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+ instance/
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+ .webassets-cache
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+
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+ # Scrapy stuff:
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+ .scrapy
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+
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+ # Sphinx documentation
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+ docs/_build/
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+
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+ # PyBuilder
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+ .pybuilder/
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+ target/
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+
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+ # Jupyter Notebook
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+ .ipynb_checkpoints
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+
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+ # IPython
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+ profile_default/
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+ ipython_config.py
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+
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+ # pyenv
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+ # For a library or package, you might want to ignore these files since the code is
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+ # intended to run in multiple environments; otherwise, check them in:
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+ # .python-version
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+
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+ # pipenv
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+ # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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+ # However, in case of collaboration, if having platform-specific dependencies or dependencies
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+ # having no cross-platform support, pipenv may install dependencies that don't work, or not
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+ # install all needed dependencies.
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+ #Pipfile.lock
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+
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+ # UV
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+ # Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
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+ # This is especially recommended for binary packages to ensure reproducibility, and is more
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+ # commonly ignored for libraries.
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+ #uv.lock
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+
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+ # poetry
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+ # Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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+ # This is especially recommended for binary packages to ensure reproducibility, and is more
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+ # commonly ignored for libraries.
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+ # https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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+ #poetry.lock
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+ #poetry.toml
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+
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+ # pdm
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+ # Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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+ # pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
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+ # https://pdm-project.org/en/latest/usage/project/#working-with-version-control
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+ #pdm.lock
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+ #pdm.toml
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+ .pdm-python
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+ .pdm-build/
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+
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+ # pixi
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+ # Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
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+ #pixi.lock
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+ # Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
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+ # in the .venv directory. It is recommended not to include this directory in version control.
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+ .pixi
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+
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+ # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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+ __pypackages__/
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+
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+ # Celery stuff
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+ celerybeat-schedule
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+ celerybeat.pid
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+
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+ # SageMath parsed files
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+ *.sage.py
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+
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+ # Environments
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+ .env
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+ .envrc
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+ .venv
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+ env/
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+ venv/
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+ ENV/
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+ env.bak/
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+ venv.bak/
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+
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+ # Spyder project settings
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+ .spyderproject
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+ .spyproject
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+
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+ # Rope project settings
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+ .ropeproject
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+
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+ # mkdocs documentation
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+ /site
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+
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+ # mypy
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+ .mypy_cache/
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+ .dmypy.json
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+ dmypy.json
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+
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+ # Pyre type checker
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+ .pyre/
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+
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+ # pytype static type analyzer
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+ .pytype/
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+
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+ # Cython debug symbols
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+ cython_debug/
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+
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+ # PyCharm
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+ # JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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+ # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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+ # and can be added to the global gitignore or merged into this file. For a more nuclear
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+ # option (not recommended) you can uncomment the following to ignore the entire idea folder.
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+ #.idea/
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+
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+ # Abstra
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+ # Abstra is an AI-powered process automation framework.
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+ # Ignore directories containing user credentials, local state, and settings.
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+ # Learn more at https://abstra.io/docs
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+ .abstra/
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+
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+ # Visual Studio Code
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+ # Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore
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+ # that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
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+ # and can be added to the global gitignore or merged into this file. However, if you prefer,
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+ # you could uncomment the following to ignore the entire vscode folder
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+ # .vscode/
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+
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+ # Ruff stuff:
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+ .ruff_cache/
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+
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+ # PyPI configuration file
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+ .pypirc
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+
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+ # Cursor
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+ # Cursor is an AI-powered code editor. `.cursorignore` specifies files/directories to
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+ # exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
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+ # refer to https://docs.cursor.com/context/ignore-files
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+ .cursorignore
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+ .cursorindexingignore
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+
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+ # Marimo
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+ marimo/_static/
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+ marimo/_lsp/
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+ __marimo__/
@@ -0,0 +1,58 @@
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+ # Changelog
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+
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+ All notable changes to this project will be documented in this file.
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+
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+ The format is based on Keep a Changelog https://keepachangelog.com
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+ and this project follows Semantic Versioning https://semver.org
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+
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+ ---
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+
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+ ## [Unrealeased v0.0.0] - 2025-12-16
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+
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+ ### First steps
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+ - Vessel data reading, forecast downloading, short-term weather routing in one file
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+
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+ ---
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+
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+ ## [Unrealeased v0.1.0] - 2026-01-19
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+
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+ ### Added
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+ - Common module with abstract classes ArchiteuthisObject, ArchiteuthisData, ArchiteuthisSpatialData
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+ - Forecast module with classes Forecast, Topography, and inherited, for both fixed, deterministic and ensemble envrionmental data.
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+ - Vessel module with class Vessel.
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+ - Environment module with class Environment, still to be implemented.
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+ - Core module with class RoutingAnalysis.
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+ - Dynamic routes visualisation through a Dash GUI.
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+
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+ ---
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+
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+ ## [Unrealeased v0.1.1] - 2026-02-09
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+
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+ ### Added
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+ - Satellite module with classes ArchiteuthisSatelliteData and inherited, for satellite data download.
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+ - Example for ASCAT to model comparison.
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+
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+ ---
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+
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+ ## [Unrealeased v0.1.2] - 2026-02-09
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+
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+ ### Added
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+
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+ - Exclusion zones definition.
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+ - Icebergs module, including IIP iceberg zone automatic retrieval.
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+
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+ ---
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+
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+ ## v0.1.3 - 2026-03-02
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+
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+ ### Added
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+ - Proper numpy and optimization modules, retrieved from [AeroSandbox](https://peterdsharpe.github.io/AeroSandbox/) by [Peter Sharpe](https://peterdsharpe.github.io) (<pds [at] mit [dot] edu>)
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+
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+ ### Fixed
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+ - Fixed overall package concatenation.
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+
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+ ---
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+
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+ ### v0.1.4dev
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+
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+ - HRDPS grid formatting.