ararpy 0.1.27__tar.gz → 0.1.28__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (74) hide show
  1. {ararpy-0.1.27 → ararpy-0.1.28}/PKG-INFO +1 -1
  2. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/export.py +1 -2
  3. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/initial.py +12 -9
  4. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy.egg-info/PKG-INFO +1 -1
  5. {ararpy-0.1.27 → ararpy-0.1.28}/setup.py +1 -1
  6. {ararpy-0.1.27 → ararpy-0.1.28}/LICENSE +0 -0
  7. {ararpy-0.1.27 → ararpy-0.1.28}/README.md +0 -0
  8. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/__init__.py +0 -0
  9. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/__init__.py +0 -0
  10. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/age.py +0 -0
  11. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/arr.py +0 -0
  12. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/basic.py +0 -0
  13. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/corr.py +0 -0
  14. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/err.py +0 -0
  15. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/histogram.py +0 -0
  16. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/isochron.py +0 -0
  17. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/jvalue.py +0 -0
  18. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/plot.py +0 -0
  19. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/raw_funcs.py +0 -0
  20. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/regression.py +0 -0
  21. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/calc/spectra.py +0 -0
  22. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/022_VU124-M11a.ahd +0 -0
  23. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/20WHA0103.age +0 -0
  24. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/22WHA0078.xls +0 -0
  25. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/22WHA0433.age +0 -0
  26. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/22WHA0433.arr +0 -0
  27. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/22WHA0433.full.xls +0 -0
  28. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/24WHN0001-51-592.XLS +0 -0
  29. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/AHD.input-filter +0 -0
  30. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/ArAr.calc +0 -0
  31. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/ArArCALC.age +0 -0
  32. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/NGX-600 - Copy.TXT +0 -0
  33. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/NGX-600.TXT +0 -0
  34. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/NGX-XLS.input-filter +0 -0
  35. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/Qtegra-exported-xls.input-filter +0 -0
  36. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/S01-239.csv +0 -0
  37. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/WH01.irra +0 -0
  38. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/WHA.pdf +0 -0
  39. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/raw_example.xls +0 -0
  40. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/examples/sample-default.smp +0 -0
  41. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/__init__.py +0 -0
  42. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/arr_file.py +0 -0
  43. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/basic.py +0 -0
  44. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/calc_file.py +0 -0
  45. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/new_file.py +0 -0
  46. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/raw_file.py +0 -0
  47. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/files/xls.py +0 -0
  48. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/EXPORT_TO_PDF_DATA_PROPERTIES.py +0 -0
  49. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/__init__.py +0 -0
  50. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/basic.py +0 -0
  51. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/calculation.py +0 -0
  52. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/consts.py +0 -0
  53. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/corr.py +0 -0
  54. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/diffusion_funcs.py +0 -0
  55. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/info.py +0 -0
  56. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/json.py +0 -0
  57. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/plots.py +0 -0
  58. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/raw.py +0 -0
  59. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/sample.py +0 -0
  60. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/style.py +0 -0
  61. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/smp/table.py +0 -0
  62. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/test.py +0 -0
  63. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/thermo/__init__.py +0 -0
  64. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/thermo/arrhenius.py +0 -0
  65. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/thermo/atomic_level_random_walk.py +0 -0
  66. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy/thermo/basic.py +0 -0
  67. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy.egg-info/SOURCES.txt +0 -0
  68. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy.egg-info/dependency_links.txt +0 -0
  69. {ararpy-0.1.27 → ararpy-0.1.28}/ararpy.egg-info/top_level.txt +0 -0
  70. {ararpy-0.1.27 → ararpy-0.1.28}/setup.cfg +0 -0
  71. {ararpy-0.1.27 → ararpy-0.1.28}/tests/test.py +0 -0
  72. {ararpy-0.1.27 → ararpy-0.1.28}/tests/test2.py +0 -0
  73. {ararpy-0.1.27 → ararpy-0.1.28}/tests/test_error_correlation.py +0 -0
  74. {ararpy-0.1.27 → ararpy-0.1.28}/tests/test_regression_methods.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: ararpy
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- Version: 0.1.27
3
+ Version: 0.1.28
4
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  Summary: A project for Ar-Ar geochronology
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  Home-page: https://github.com/wuyangchn/ararpy.git
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  Author: Yang Wu
@@ -310,7 +310,7 @@ def getRectFromSpectra(data):
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  """
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  data = np.array(data)
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- return list(map(lambda index: [data[index,0], min(data[index,[1,2]]), np.diff(data[[index,index+1],0])[0], np.diff(data[index,[1,2]])[0]], list(range(len(data) - 1))))
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+ return list(filter(lambda rect: rect[2] != 0 and rect[3] != 0, map(lambda index: [data[index,0], min(data[index,[1,2]]), abs(data[index+1,0] - data[index,0]), abs(data[index,1] - data[index,2])], list(range(len(data) - 1)))))
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  def _get_additional_text_series(name):
@@ -364,7 +364,6 @@ def _get_plot_data_age_spectra_series(smp: sample, **options):
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  plateau_data = np.array(set_data[index])
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  # spectra_fill_data = list(map(lambda each: [data[0][each - 1], min(data[1][each], data[2][each]), data[0][each + 1] - data[0][each], sigma * abs(data[1][each] - data[2][each])], selection))
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  spectra_fill_data = getRectFromSpectra(plateau_data)
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- print(spectra_fill_data)
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  series.append({
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  'type': 'series.rect', 'id': f'rect-{smp.name()}-{get_random_digits()}', 'name': f'rect-{smp.name()}-{get_random_digits()}',
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  'color': ['red', 'blue'][index], 'fill_color': ['red', 'blue'][index], 'line_width': 0, 'line_style': 'none', 'z_index': 9,
@@ -302,17 +302,20 @@ def check_version(smp: Sample):
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  smp.Info.experiment.name = smp.name()
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  smp.Info.experiment.step_num = smp.sequence().size
304
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305
- # 20250404
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+ # 20250404: # Normalization for steps with different J values
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  doNormalize = True
307
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  v, sv = [], []
308
- if smp.Info.sample.type.lower() == "unknown":
309
- v, sv = smp.TotalParam[67:69]
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- sv = np.multiply(v, sv) / 100
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- elif smp.Info.sample.type.lower() == "air":
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- v, sv = smp.TotalParam[93:95]
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- sv = np.multiply(v, sv) / 100
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- elif smp.Info.sample.type.lower() == "standard":
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- v, sv = smp.TotalParam[59:61]
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+ try:
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+ if smp.Info.sample.type.lower() == "unknown":
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+ v, sv = smp.TotalParam[67:69]
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+ sv = np.multiply(v, sv) / 100
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+ elif smp.Info.sample.type.lower() == "air":
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+ v, sv = smp.TotalParam[93:95]
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+ sv = np.multiply(v, sv) / 100
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+ elif smp.Info.sample.type.lower() == "standard":
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+ v, sv = smp.TotalParam[59:61]
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+ except:
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+ doNormalize = False
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  smp.NormalizeFactor = [
317
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  [1 if v[0] == each or not doNormalize else v[0] / each for each in v],
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  [0 if v[0] == v[i] or not doNormalize else err.div((v[0], sv[0]), (v[i], sv[i])) for i in range(len(v))]
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ararpy
3
- Version: 0.1.27
3
+ Version: 0.1.28
4
4
  Summary: A project for Ar-Ar geochronology
5
5
  Home-page: https://github.com/wuyangchn/ararpy.git
6
6
  Author: Yang Wu
@@ -16,7 +16,7 @@ long_description = (here / 'README.md').read_text(encoding='utf-8')
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  setuptools.setup(
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  name='ararpy', #
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- version='0.1.27', # version
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+ version='0.1.28', # version
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  author='Yang Wu',
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  author_email='wuycug@hotmail.com',
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  description='A project for Ar-Ar geochronology', # short description
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