apscale-gui 3.2.1__tar.gz → 3.2.2__tar.gz

{apscale_gui-3.2.1/apscale_gui.egg-info → apscale_gui-3.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: apscale_gui
-Version: 3.2.1
+Version: 3.2.2
 Summary: Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data - Graphical User Interface
 Home-page: https://github.com/TillMacher/apscale_gui
 Author: Till-Hendrik Macher

{apscale_gui-3.2.1 → apscale_gui-3.2.2}/apscale_gui/apscale_gui.py

@@ -942,6 +942,8 @@ def main():
 
                 if st.session_state["P5 Primer (5' - 3')"] == '' or st.session_state["P7 Primer (5' - 3')"] == '' or st.session_state['min length'] == '' or st.session_state['max length'] =='':
                     st.error('Please fill out all required fields!')
+                elif float(st.session_state["sequence group threshold"]) >= 1:
+                    st.error('Please choose a sequence group threshold > 1.\n\nESVs are generated seperately!')
                 else:
                     if st.session_state['run_apscale_mode'] == 'Run apscale (basic mode)':
                         st.info('The "Basic mode" mode skips "Replicate merging" and "NC removal".')
@@ -1040,19 +1042,16 @@ def main():
                             subprocess.Popen(cmd, creationflags=subprocess.DETACHED_PROCESS | subprocess.CREATE_NEW_PROCESS_GROUP)
                         st.success("APSCALE analysis module started — it will open in a new browser tab.")
 
-                with st.expander("🧩 TaxonTableTools Table Conversion", expanded=False):
+                with st.expander("🧩 TaxonTableTools2", expanded=False):
                     st.write(
-                        "Combine your read and taxonomy tables into a single, merged table. "
-                        "This format is fully compatible with TaxonTableTools for downstream analyses "
-                        "and provides a more convenient structure for working with your data."
-                    )
-                    available_read_tables = {Path(i).name: Path(i) for i in glob.glob(str(project_folder / '11_read_table' / 'data' / '*_read_table_*.xlsx'))}
-                    available_taxonomy_tables = {Path(i).name: Path(i) for i in glob.glob(str(project_folder / '11_read_table' / 'data' / 'blastn_*' / 'blastn_*.xlsx'))}
-                    st.selectbox(label='Read table', key='TTT_read_table', options=list(available_read_tables.keys()))
-                    st.selectbox(label='Taxonomy table', key='TTT_taxonomy_table', options=list(available_taxonomy_tables.keys()))
-
-                    if st.button('Merge tables'):
-                        merge_tables(available_read_tables[st.session_state['TTT_read_table']], available_taxonomy_tables[st.session_state['TTT_taxonomy_table']])
+                        "Combine your read and taxonomy tables into a single, merged table for TaxonTableTools2.\n\n"
+                        "TaxonTableTools2 (TTT) is an easy-to-use graphical software designed for the analysis"
+                        "and visualization of DNA metabarcoding data. It enables biologists and researchers"
+                        "without bioinformatics experience to explore taxonomic datasets quickly, reproducibly,"
+                        "and interactively through a modern graphical user interface."
+                        )
+                    if st.button('Learn More'):
+                        webbrowser.open("https://github.com/TillMacher/TaxonTableTools2")
 
         ############################################################################################################
         st.markdown("---")

{apscale_gui-3.2.1 → apscale_gui-3.2.2/apscale_gui.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: apscale_gui
-Version: 3.2.1
+Version: 3.2.2
 Summary: Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data - Graphical User Interface
 Home-page: https://github.com/TillMacher/apscale_gui
 Author: Till-Hendrik Macher

{apscale_gui-3.2.1 → apscale_gui-3.2.2}/setup.py

@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
 
 setuptools.setup(
     name="apscale_gui",
-    version="3.2.1",
+    version="3.2.2",
     author="Till-Hendrik Macher",
     author_email="macher@uni-trier.de",
     description="Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data - Graphical User Interface",