appose 0.2.0__py3-none-any.whl → 0.4.0__py3-none-any.whl

appose/__init__.py

@@ -2,7 +2,7 @@
 # #%L
 # Appose: multi-language interprocess cooperation with shared memory.
 # %%
-# Copyright (C) 2023 - 2024 Appose developers.
+# Copyright (C) 2023 - 2025 Appose developers.
 # %%
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
@@ -42,8 +42,6 @@ The steps for using Appose are:
 
 ## Examples
 
-* TODO - move the below code somewhere linkable, for succinctness here.
-
 Here is a very simple example written in Python:
 
     import appose
@@ -84,7 +82,7 @@ And here is an example using a few more of Appose's features:
     def task_listener(event):
         match event.responseType:
             case UPDATE:
-                print(f"Progress {task.current}/{task.maximum}")
+                print(f"Progress {event.current}/{event.maximum}")
             case COMPLETION:
                 numer = task.outputs["numer"]
                 denom = task.outputs["denom"]
@@ -127,8 +125,94 @@ But Appose is compatible with any program that abides by the
 2. The worker must issue responses in Appose's response format on its
    standard output (stdout) stream.
 
-TODO - write up the request and response formats in detail here!
-JSON, one line per request/response.
+### Requests to worker from service
+
+A *request* is a single line of JSON sent to the worker process via
+its standard input stream. It has a `task` key taking the form of a
+UUID, and a `requestType` key with one of the following values:
+
+#### EXECUTE
+
+Asynchronously execute a script within the worker process. E.g.:
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "requestType" : "EXECUTE",
+       "script" : "task.outputs[\"result\"] = computeResult(gamma)\n",
+       "inputs" : {"gamma": 2.2}
+    }
+
+#### CANCEL
+
+Cancel a running script. E.g.:
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "requestType" : "CANCEL"
+    }
+
+### Responses from worker to service
+
+A *response* is a single line of JSON with a `task` key taking the form
+of a UUID, and a `responseType` key with one of the following values:
+
+#### LAUNCH
+
+A LAUNCH response is issued to confirm the success of an EXECUTE
+request.
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "responseType" : "LAUNCH"
+    }
+
+#### UPDATE
+
+An UPDATE response is issued to convey that a task has somehow made
+progress. The UPDATE response typically comes bundled with a
+`message` string indicating what has changed, `current` and/or
+`maximum` progress indicators conveying the step the task has
+reached, or both.
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "responseType" : "UPDATE",
+       "message" : "Processing step 0 of 91",
+       "current" : 0,
+       "maximum" : 91
+    }
+
+#### COMPLETION
+
+A COMPLETION response is issued to convey that a task has successfully
+completed execution, as well as report the values of any task outputs.
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "responseType" : "COMPLETION",
+       "outputs" : {"result" : 91}
+    }
+
+#### CANCELATION
+
+A CANCELATION response is issued to confirm the success of a CANCEL
+request.
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "responseType" : "CANCELATION"
+    }
+
+#### FAILURE
+
+A FAILURE response is issued to convey that a task did not completely
+and successfully execute, such as an exception being raised.
+
+    {
+       "task" : "87427f91-d193-4b25-8d35-e1292a34b5c4",
+       "responseType" : "FAILURE",
+       "error", "Invalid gamma value"
+    }
 '''
 
 from pathlib import Path

appose/environment.py

@@ -2,7 +2,7 @@
 # #%L
 # Appose: multi-language interprocess cooperation with shared memory.
 # %%
-# Copyright (C) 2023 - 2024 Appose developers.
+# Copyright (C) 2023 - 2025 Appose developers.
 # %%
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:

appose/paths.py

@@ -2,7 +2,7 @@
 # #%L
 # Appose: multi-language interprocess cooperation with shared memory.
 # %%
-# Copyright (C) 2023 - 2024 Appose developers.
+# Copyright (C) 2023 - 2025 Appose developers.
 # %%
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:

appose/python_worker.py

@@ -2,7 +2,7 @@
 # #%L
 # Appose: multi-language interprocess cooperation with shared memory.
 # %%
-# Copyright (C) 2023 - 2024 Appose developers.
+# Copyright (C) 2023 - 2025 Appose developers.
 # %%
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
@@ -42,7 +42,8 @@ import ast
 import sys
 import traceback
 from threading import Thread
-from typing import Optional
+from time import sleep
+from typing import Any, Dict, Optional
 
 # NB: Avoid relative imports so that this script can be run standalone.
 from appose.service import RequestType, ResponseType
@@ -53,13 +54,16 @@ class Task:
     def __init__(self, uuid: str) -> None:
         self.uuid = uuid
         self.outputs = {}
+        self.finished = False
         self.cancel_requested = False
+        self.thread = None  # Initialize thread attribute
 
     def update(
         self,
         message: Optional[str] = None,
         current: Optional[int] = None,
         maximum: Optional[int] = None,
+        info: Optional[Dict[str, Any]] = None,
     ) -> None:
         args = {}
         if message is not None:
@@ -74,6 +78,7 @@ class Task:
                 args["maximum"] = int(maximum)
             except ValueError:
                 pass
+        args["info"] = info
         self._respond(ResponseType.UPDATE, args)
 
     def cancel(self) -> None:
@@ -111,7 +116,14 @@ class Task:
                     # Last statement of the script looks like an expression. Evaluate!
                     last = ast.Expression(block.body.pop().value)
 
-                _globals = {}
+                # NB: When `exec` gets two separate objects as *globals* and
+                # *locals*, the code will be executed as if it were embedded in
+                # a class definition. This means functions and classes defined
+                # in the executed code will not be able to access variables
+                # assigned at the top level, because the "top level" variables
+                # are treated as class variables in a class definition.
+                # See: https://docs.python.org/3/library/functions.html#exec
+                _globals = binding
                 exec(compile(block, "<string>", mode="exec"), _globals, binding)
                 if last is not None:
                     result = eval(
@@ -131,10 +143,24 @@ class Task:
 
             self._report_completion()
 
-        # TODO: Consider whether to retain a reference to this Thread, and
-        # expose a "force" option for cancelation that kills it forcibly; see:
-        # https://www.geeksforgeeks.org/python-different-ways-to-kill-a-thread/
-        Thread(target=execute_script, name=f"Appose-{self.uuid}").start()
+        # HACK: Pre-load toplevel import statements before running the script
+        # as a whole on its own Thread. Why? Because on Windows, some imports
+        # (e.g. numpy) may lead to hangs if loaded from a separate thread.
+        # See https://github.com/apposed/appose/issues/13.
+        block = ast.parse(script, mode="exec")
+        import_nodes = [
+            node
+            for node in block.body
+            if isinstance(node, (ast.Import, ast.ImportFrom))
+        ]
+        import_block = ast.Module(body=import_nodes, type_ignores=[])
+        compiled_imports = compile(import_block, filename="<imports>", mode="exec")
+        exec(compiled_imports, globals())
+
+        # Create a thread and save a reference to it, in case its script
+        # ends up killing the thread. This happens e.g. if it calls sys.exit.
+        self.thread = Thread(target=execute_script, name=f"Appose-{self.uuid}")
+        self.thread.start()
 
     def _report_launch(self) -> None:
         self._respond(ResponseType.LAUNCH, None)
@@ -144,20 +170,31 @@ class Task:
         self._respond(ResponseType.COMPLETION, args)
 
     def _respond(self, response_type: ResponseType, args: Optional[Args]) -> None:
-        response = {"task": self.uuid, "responseType": response_type.value}
+        already_terminated = False
+        if response_type.is_terminal():
+            if self.finished:
+                # This is not the first terminal response. Let's
+                # remember, in case an exception is generated below,
+                # so that we can avoid infinite recursion loops.
+                already_terminated = True
+            self.finished = True
+
+        response = {}
         if args is not None:
             response.update(args)
+        response.update({"task": self.uuid, "responseType": response_type.value})
         # NB: Flush is necessary to ensure service receives the data!
         try:
             print(encode(response), flush=True)
         except Exception:
-            # Encoding can fail due to unsupported types, when the response
-            # or its elements are not supported by JSON encoding.
+            if already_terminated:
+                # An exception triggered a failure response which
+                # then triggered another exception. Let's stop here
+                # to avoid the risk of infinite recursion loops.
+                return
+            # Encoding can fail due to unsupported types, when the
+            # response or its elements are not supported by JSON encoding.
             # No matter what goes wrong, we want to tell the caller.
-            if response_type is ResponseType.FAILURE:
-                # TODO: How to address this hypothetical case
-                # of a failure message triggering another failure?
-                raise
             self.fail(traceback.format_exc())
 
 
@@ -165,6 +202,24 @@ def main() -> None:
     _set_worker(True)
 
     tasks = {}
+    running = True
+
+    def cleanup_threads():
+        while running:
+            sleep(0.05)
+            dead = {
+                uuid: task
+                for uuid, task in tasks.items()
+                if task.thread is not None and not task.thread.is_alive()
+            }
+            for uuid, task in dead.items():
+                tasks.pop(uuid)
+                if not task.finished:
+                    # The task died before reporting a terminal status.
+                    # We report this situation as failure by thread death.
+                    task.fail("thread death")
+
+    Thread(target=cleanup_threads, name="Appose-Janitor").start()
 
     while True:
         try:
@@ -193,6 +248,8 @@ def main() -> None:
                     continue
                 task.cancel_requested = True
 
+    running = False
+
 
 if __name__ == "__main__":
     main()

appose/service.py

@@ -2,7 +2,7 @@
 # #%L
 # Appose: multi-language interprocess cooperation with shared memory.
 # %%
-# Copyright (C) 2023 - 2024 Appose developers.
+# Copyright (C) 2023 - 2025 Appose developers.
 # %%
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
@@ -256,11 +256,35 @@ class ResponseType(Enum):
     FAILURE = "FAILURE"
     CRASH = "CRASH"
 
+    """
+    True iff response type is COMPLETE, CANCELED, FAILED, or CRASHED.
+    """
+
+    def is_terminal(self):
+        return self in (
+            ResponseType.COMPLETION,
+            ResponseType.CANCELATION,
+            ResponseType.FAILURE,
+            ResponseType.CRASH,
+        )
+
 
 class TaskEvent:
-    def __init__(self, task: "Task", response_type: ResponseType) -> None:
+    def __init__(
+        self,
+        task: "Task",
+        response_type: ResponseType,
+        message: Optional[str] = None,
+        current: Optional[int] = None,
+        maximum: Optional[int] = None,
+        info: Optional[Dict[str, Any]] = None,
+    ) -> None:
         self.task: "Task" = task
         self.response_type: ResponseType = response_type
+        self.message: Optional[str] = message
+        self.current: Optional[int] = current
+        self.maximum: Optional[int] = maximum
+        self.info: Optional[Dict[str, Any]] = info
 
     def __str__(self):
         return f"[{self.response_type}] {self.task}"
@@ -354,13 +378,8 @@ class Task:
             case ResponseType.LAUNCH:
                 self.status = TaskStatus.RUNNING
             case ResponseType.UPDATE:
-                self.message = response.get("message")
-                current = response.get("current")
-                maximum = response.get("maximum")
-                if current is not None:
-                    self.current = int(current)
-                if maximum is not None:
-                    self.maximum = int(maximum)
+                # No extra action needed.
+                pass
             case ResponseType.COMPLETION:
                 self.service._tasks.pop(self.uuid, None)
                 self.status = TaskStatus.COMPLETE
@@ -380,7 +399,11 @@ class Task:
                 )
                 return
 
-        event = TaskEvent(self, response_type)
+        message = response.get("message")
+        current = response.get("current")
+        maximum = response.get("maximum")
+        info = response.get("info")
+        event = TaskEvent(self, response_type, message, current, maximum, info)
         for listener in self.listeners:
             listener(event)
 
@@ -397,7 +420,4 @@ class Task:
             self.cv.notify_all()
 
     def __str__(self):
-        return (
-            f"{self.uuid=}, {self.status=}, {self.message=}, "
-            f"{self.current=}, {self.maximum=}, {self.error=}"
-        )
+        return f"{self.uuid=}, {self.status=}, {self.error=}"

appose/types.py

@@ -2,7 +2,7 @@
 # #%L
 # Appose: multi-language interprocess cooperation with shared memory.
 # %%
-# Copyright (C) 2023 - 2024 Appose developers.
+# Copyright (C) 2023 - 2025 Appose developers.
 # %%
 # Redistribution and use in source and binary forms, with or without
 # modification, are permitted provided that the following conditions are met:
@@ -45,13 +45,29 @@ class SharedMemory(shared_memory.SharedMemory):
     `unlink_on_dispose` flag.
     """
 
-    def __init__(self, name: str = None, create: bool = False, size: int = 0):
-        super().__init__(name=name, create=create, size=size)
+    def __init__(self, name: str = None, create: bool = False, rsize: int = 0):
+        """
+        Create a new shared memory block, or attach to an existing one.
+
+        :param name:
+            The unique name for the requested shared memory, specified as a
+            string. If create is True (i.e. a new shared memory block) and
+            no name is given, a novel name will be generated.
+        :param create:
+            Whether a new shared memory block is created (True)
+            or an existing one is attached to (False).
+        :param rsize:
+            Requested size in bytes. The true allocated size will be at least
+            this much, but may be rounded up to the next block size multiple,
+            depending on the running platform.
+        """
+        super().__init__(name=name, create=create, size=rsize)
+        self.rsize = rsize
         self._unlink_on_dispose = create
         if _is_worker:
             # HACK: Remove this shared memory block from the resource_tracker,
-            # which wants to clean up shared memory blocks after all known
-            # references are done using them.
+            # which would otherwise want to clean up shared memory blocks
+            # after all known references are done using them.
             #
             # There is one resource_tracker per Python process, and they will
             # each try to delete shared memory blocks known to them when they
@@ -60,7 +76,37 @@ class SharedMemory(shared_memory.SharedMemory):
             # As such, the rule Appose follows is: let the service process
             # always handle cleanup of shared memory blocks, regardless of
             # which process initially allocated it.
-            resource_tracker.unregister(self._name, "shared_memory")
+            try:
+                resource_tracker.unregister(self._name, "shared_memory")
+            except ModuleNotFoundError:
+                # Unfortunately, on (some?) Windows systems, we see the error:
+                #
+                # Traceback (most recent call last):                                                # noqa: E501
+                #   File "...\site-packages\appose\types.py", line 97, in decode                    # noqa: E501
+                #     return json.loads(the_json, object_hook=_appose_object_hook)                  # noqa: E501
+                #   File "...\lib\json\__init__.py", line 359, in loads                             # noqa: E501
+                #     return cls(**kw).decode(s)                                                    # noqa: E501
+                #   File "...\lib\json\decoder.py", line 337, in decode                             # noqa: E501
+                #     obj, end = self.raw_decode(s, idx=_w(s, 0).end())                             # noqa: E501
+                #   File "...\lib\json\decoder.py", line 353, in raw_decode                         # noqa: E501
+                #     obj, end = self.scan_once(s, idx)                                             # noqa: E501
+                #   File "...\site-packages\appose\types.py", line 177, in _appose_object_hook      # noqa: E501
+                #     return SharedMemory(name=(obj["name"]), size=(obj["size"]))                   # noqa: E501
+                #   File "...\site-packages\appose\types.py", line 63, in __init__                  # noqa: E501
+                #     resource_tracker.unregister(self._name, "shared_memory")                      # noqa: E501
+                #   File "...\lib\multiprocessing\resource_tracker.py", line 159, in unregister     # noqa: E501
+                #     self._send('UNREGISTER', name, rtype)                                         # noqa: E501
+                #   File "...\lib\multiprocessing\resource_tracker.py", line 162, in _send          # noqa: E501
+                #     self.ensure_running()                                                         # noqa: E501
+                #   File "...\lib\multiprocessing\resource_tracker.py", line 129, in ensure_running # noqa: E501
+                #     pid = util.spawnv_passfds(exe, args, fds_to_pass)                             # noqa: E501
+                #   File "...\lib\multiprocessing\util.py", line 448, in spawnv_passfds             # noqa: E501
+                #     import _posixsubprocess                                                       # noqa: E501
+                # ModuleNotFoundError: No module named '_posixsubprocess'                           # noqa: E501
+                #
+                # A bug in Python? Regardless: we guard against it here.
+                # See also: https://github.com/imglib/imglib2-appose/issues/1
+                pass
 
     def unlink_on_dispose(self, value: bool) -> None:
         """
@@ -116,7 +162,7 @@ class NDArray:
         self.shape = shape
         self.shm = (
             SharedMemory(
-                create=True, size=ceil(prod(shape) * _bytes_per_element(dtype))
+                create=True, rsize=ceil(prod(shape) * _bytes_per_element(dtype))
             )
             if shm is None
             else shm
@@ -127,7 +173,7 @@ class NDArray:
             f"NDArray("
             f"dtype='{self.dtype}', "
             f"shape={self.shape}, "
-            f"shm='{self.shm.name}' ({self.shm.size}))"
+            f"shm='{self.shm.name}' ({self.shm.rsize}))"
         )
 
     def ndarray(self):
@@ -158,7 +204,7 @@ class _ApposeJSONEncoder(json.JSONEncoder):
             return {
                 "appose_type": "shm",
                 "name": obj.name,
-                "size": obj.size,
+                "rsize": obj.rsize,
             }
         if isinstance(obj, NDArray):
             return {
@@ -174,7 +220,7 @@ def _appose_object_hook(obj: Dict):
     atype = obj.get("appose_type")
     if atype == "shm":
         # Attach to existing shared memory block.
-        return SharedMemory(name=(obj["name"]), size=(obj["size"]))
+        return SharedMemory(name=(obj["name"]), rsize=(obj["rsize"]))
     elif atype == "ndarray":
         return NDArray(obj["dtype"], obj["shape"], obj["shm"])
     else:

{appose-0.2.0.dist-info → appose-0.4.0.dist-info}/METADATA

@@ -1,9 +1,9 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: appose
-Version: 0.2.0
+Version: 0.4.0
 Summary: Appose: multi-language interprocess cooperation with shared memory.
 Author: Appose developers
-License: Simplified BSD License
+License-Expression: BSD-2-Clause
 Project-URL: homepage, https://github.com/apposed/appose-python
 Project-URL: documentation, https://github.com/apposed/appose-python/blob/main/README.md
 Project-URL: source, https://github.com/apposed/appose-python
@@ -17,7 +17,7 @@ Classifier: Intended Audience :: Science/Research
 Classifier: Programming Language :: Python :: 3 :: Only
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Classifier: License :: OSI Approved :: BSD License
+Classifier: Programming Language :: Python :: 3.12
 Classifier: Operating System :: Microsoft :: Windows
 Classifier: Operating System :: Unix
 Classifier: Operating System :: MacOS
@@ -29,17 +29,18 @@ Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE.txt
 Provides-Extra: dev
-Requires-Dist: autopep8 ; extra == 'dev'
-Requires-Dist: black ; extra == 'dev'
-Requires-Dist: build ; extra == 'dev'
-Requires-Dist: flake8 ; extra == 'dev'
-Requires-Dist: flake8-pyproject ; extra == 'dev'
-Requires-Dist: flake8-typing-imports ; extra == 'dev'
-Requires-Dist: isort ; extra == 'dev'
-Requires-Dist: pytest ; extra == 'dev'
-Requires-Dist: numpy ; extra == 'dev'
-Requires-Dist: toml ; extra == 'dev'
-Requires-Dist: validate-pyproject[all] ; extra == 'dev'
+Requires-Dist: autopep8; extra == "dev"
+Requires-Dist: black; extra == "dev"
+Requires-Dist: build; extra == "dev"
+Requires-Dist: flake8; extra == "dev"
+Requires-Dist: flake8-pyproject; extra == "dev"
+Requires-Dist: flake8-typing-imports; extra == "dev"
+Requires-Dist: isort; extra == "dev"
+Requires-Dist: pytest; extra == "dev"
+Requires-Dist: numpy; extra == "dev"
+Requires-Dist: toml; extra == "dev"
+Requires-Dist: validate-pyproject[all]; extra == "dev"
+Dynamic: license-file
 
 # Appose Python
 

appose-0.4.0.dist-info/RECORD

@@ -0,0 +1,11 @@
+appose/__init__.py,sha256=SRXmNEqFIAajVlwVCSAdhHQytRKZJiWI5Y5-xwioW0w,7544
+appose/environment.py,sha256=Kg-MfAcmVPDltwqvmrcvus-pP01SNUdn4bE2kdkIVuk,7597
+appose/paths.py,sha256=WgBHwnZdS3Ot8_hssFqUiTGnunolYRrHLf9rAfEU5r4,2182
+appose/python_worker.py,sha256=iQoz2t0glbXlR1lgynN-yXPIgtlAbCFtMYYpev-LZyU,9844
+appose/service.py,sha256=UQn1aoL3uQ8gPKS6nf5oYg0Ea1ZRsaQ3TfLCKeCZLPQ,14581
+appose/types.py,sha256=uidbt2JwWJ2D3Mbtc4Vl2sRP6WNgKjmfcHjJ9QLWkcs,10557
+appose-0.4.0.dist-info/licenses/LICENSE.txt,sha256=ZedidA6NyZclNlsx-vl9IVBWRAQSqXdNsCWgtFcwzIE,1313
+appose-0.4.0.dist-info/METADATA,sha256=cI_E4xetwcHlusk2UzSPOk6SWrNr_vBrGjOC_0H4CFo,5598
+appose-0.4.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+appose-0.4.0.dist-info/top_level.txt,sha256=oqHhw2QGlaFfH3jMR9H5Cd6XYHdEv5DvK1am0iEFPW0,7
+appose-0.4.0.dist-info/RECORD,,

{appose-0.2.0.dist-info → appose-0.4.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (72.1.0)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

{appose-0.2.0.dist-info → appose-0.4.0.dist-info/licenses}/LICENSE.txt

@@ -1,4 +1,4 @@
-Copyright (c) 2023 - 2024, Appose developers.
+Copyright (c) 2023 - 2025, Appose developers.
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification,

appose-0.2.0.dist-info/RECORD

@@ -1,11 +0,0 @@
-appose/__init__.py,sha256=sGkVQv1eZQp0BOoySsVOGcVMr47rE3PSyqxsk8_EOn4,5404
-appose/environment.py,sha256=8BBvRIzr6ZIjBeZMQYOHG6Va1gSxMkYc3ieJ9HafeXA,7597
-appose/paths.py,sha256=dcXD54rOUiCWfM58vqttRY0Eu6YUFMD65ZO_2V4hhEk,2182
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