aplos-nca-saas-sdk 0.0.21__tar.gz → 0.0.22__tar.gz

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Files changed (70) hide show
  1. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/PKG-INFO +1 -1
  2. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/devops/pypi/build.py +29 -6
  3. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/pyproject.toml +1 -2
  4. aplos_nca_saas_sdk-0.0.22/requirements.dev.txt +8 -0
  5. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/requirements.txt +1 -1
  6. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/nca_execution_config.py +1 -1
  7. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/version.py +1 -1
  8. aplos_nca_saas_sdk-0.0.21/requirements.dev.txt +0 -1
  9. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/.gitignore +0 -0
  10. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/.pypirc +0 -0
  11. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/.vscode/launch.json +0 -0
  12. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/.vscode/settings.json +0 -0
  13. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/LICENSE +0 -0
  14. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/README.md +0 -0
  15. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/devops/pypi/readme.md +0 -0
  16. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/devops/requirements.txt +0 -0
  17. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/docs/images/API_Configuration_blur.png +0 -0
  18. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/docs/images/aplos-nca-commandline-cropped.png +0 -0
  19. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/docs/images/aplos-nca-commandline.png +0 -0
  20. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/mypy.ini +0 -0
  21. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/mypy_checks.py +0 -0
  22. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/readme.md +0 -0
  23. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/run-checks.sh +0 -0
  24. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/__init__.py +0 -0
  25. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/_config_base.py +0 -0
  26. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/app_settings_config.py +0 -0
  27. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/config_sample.json +0 -0
  28. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/file_upload_config.py +0 -0
  29. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/login_config.py +0 -0
  30. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/configs/nca_validation_config.py +0 -0
  31. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/example_main.py +0 -0
  32. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/executions/config1.json +0 -0
  33. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.csv +0 -0
  34. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.dat +0 -0
  35. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.sas7bdat +0 -0
  36. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.xls +0 -0
  37. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.xlsx +0 -0
  38. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.xpt +0 -0
  39. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/integration_test_base.py +0 -0
  40. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/integration_test_configurations.py +0 -0
  41. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/integration_test_factory.py +0 -0
  42. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/integration_test_response.py +0 -0
  43. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/integration_test_suite.py +0 -0
  44. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/readme.md +0 -0
  45. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/tests/app_configuration_test.py +0 -0
  46. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/tests/app_login_test.py +0 -0
  47. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/tests/file_upload_test.py +0 -0
  48. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/tests/nca_analysis_test.py +0 -0
  49. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/integration_testing/tests/nca_analysis_validation_test.py +0 -0
  50. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/_api_base.py +0 -0
  51. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/aws_cognito.py +0 -0
  52. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/aws_s3_presigned_payload.py +0 -0
  53. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/aws_s3_presigned_upload.py +0 -0
  54. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_analysis.py +0 -0
  55. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_app_configuration.py +0 -0
  56. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_authenticator.py +0 -0
  57. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_endpoints.py +0 -0
  58. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_file_download.py +0 -0
  59. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_file_upload.py +0 -0
  60. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/nca_resources/nca_validations.py +0 -0
  61. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/run_analysis_execution.py +0 -0
  62. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/sample_files/analysis_files/single_ev/config.json +0 -0
  63. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/sample_files/analysis_files/single_ev/input.csv +0 -0
  64. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/sample_files/analysis_files/single_ev/meta_data.json +0 -0
  65. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/utilities/commandline_args.py +0 -0
  66. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/utilities/environment_services.py +0 -0
  67. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/utilities/environment_vars.py +0 -0
  68. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/utilities/file_utility.py +0 -0
  69. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/src/aplos_nca_saas_sdk/utilities/http_utility.py +0 -0
  70. {aplos_nca_saas_sdk-0.0.21 → aplos_nca_saas_sdk-0.0.22}/tests/__init__.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: aplos_nca_saas_sdk
3
- Version: 0.0.21
3
+ Version: 0.0.22
4
4
  Summary: Aplos NCA SaaS SDK
5
5
  Project-URL: Homepage, https://aplosanalytics.com/
6
6
  Project-URL: Documentation, https://docs.aplosanalytics.com/
@@ -15,7 +15,7 @@ def main():
15
15
  """build the artifacts"""
16
16
  project_root = Path(__file__).parents[2]
17
17
 
18
- # extact the version
18
+ # extract the version
19
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  pyproject_toml = os.path.join(project_root, "pyproject.toml")
20
20
  version_file = os.path.join(project_root, "src", "aplos_nca_saas_sdk", "version.py")
21
21
 
@@ -72,7 +72,7 @@ def extract_version_and_write_to_file(pyproject_toml: str, version_file: str):
72
72
 
73
73
  def run_build():
74
74
  """Run python build commands"""
75
- run_commands(["python", "-m", "build"])
75
+ output = run_commands(["python", "-m", "build"], capture_output=True)
76
76
 
77
77
 
78
78
  def run_publish():
@@ -104,25 +104,48 @@ def get_url(payload: str):
104
104
 
105
105
  def run_commands(
106
106
  commands: List[str], capture_output: bool = False, env=None
107
- ) -> str | None:
107
+ ) -> str | int | None:
108
108
  """centralized area for running process commands"""
109
109
  try:
110
110
  # Run the publish command
111
111
  result = subprocess.run(
112
112
  commands,
113
113
  check=True,
114
- capture_output=capture_output,
114
+ # capture_output=capture_output,
115
115
  env=env, # pass any environment vars
116
+ # capture errors
117
+ stderr=subprocess.PIPE,
118
+ # capture output
119
+ stdout=subprocess.PIPE,
120
+ text=True,
116
121
  )
117
122
 
118
123
  if capture_output:
119
- output = result.stdout.decode().strip()
124
+ output = str(result.stdout)
120
125
  print(output)
121
126
  return output
122
127
 
123
128
  except subprocess.CalledProcessError as e:
124
129
  logger.exception(f"An error occurred: {e}")
125
-
130
+ if e.stderr:
131
+ error = str(e.stderr)
132
+ if "401 Error" in error:
133
+ logger.error("401 Error: Invalid credentials")
134
+ if "amazonaws" in error:
135
+ logger.error(
136
+ "Please check your AWS credentials and try again."
137
+ )
138
+ print("🚨 If you this package doesn't use aws code artifact, check your pip config file "
139
+ "and remove the aws code artifact reference "
140
+ "mac: ~./.config/pip/pip.conf"
141
+ )
142
+ else:
143
+ logger.error(
144
+ "Please check your PYPI_API_TOKEN environment variable."
145
+ )
146
+
147
+ logger.error("If you need help, please contact support.")
148
+ return e.returncode
126
149
 
127
150
  if __name__ == "__main__":
128
151
  main()
@@ -7,7 +7,6 @@ packages = ["src/aplos_nca_saas_sdk"]
7
7
 
8
8
  [project]
9
9
  name = "aplos_nca_saas_sdk"
10
- source = "src/aplos_nca_saas_sdk"
11
10
  keywords = [
12
11
  "PK Analysis",
13
12
  "Pharmacokinetics",
@@ -26,7 +25,7 @@ keywords = [
26
25
  "Clinical Trials"
27
26
  ]
28
27
 
29
- version = "0.0.21"
28
+ version = "0.0.22"
30
29
  authors = [
31
30
  { name="Eric Wilson", email="eric.wilson@aplosanalytics.com" }
32
31
  ]
@@ -0,0 +1,8 @@
1
+ mypy
2
+ pytest
3
+ types-python-dateutil
4
+ build
5
+ toml
6
+ twine
7
+ wheel
8
+ pkginfo
@@ -3,5 +3,5 @@ boto3
3
3
  python-dotenv # load env values
4
4
  PyJWT # jwt in the imports
5
5
  requests
6
- boto3-stubs[cognito]
6
+ boto3-stubs
7
7
  mypy_boto3_cognito_idp
@@ -194,7 +194,7 @@ class NCAExecutionConfigs(ConfigBase):
194
194
  raise RuntimeError("Failed to load the config data")
195
195
 
196
196
  meta_data = self.__load_dictionary_data_or_file(key="meta", analysis=analysis, optional=True)
197
- data_cleaning = self.__load_dictionary_data_or_file(key="data_cleaning", analysis=analysis, optional=True)
197
+ data_cleaning = self.__load_dictionary_data_or_file(key="data_processing", analysis=analysis, optional=True)
198
198
  post_processing = self.__load_dictionary_data_or_file(key="post_processing", analysis=analysis, optional=True)
199
199
  wait_for_results =str(analysis.get("wait_for_results", True)).lower() == "true"
200
200
  max_wait_in_seconds = int(analysis.get("max_wait_in_seconds", 600))
@@ -1,4 +1,4 @@
1
1
  # Aplos NCA SaaS SDK Version File
2
2
  # This is automatically generated during the build process.
3
3
  # DO NOT UPDATE IT DIRECTLY. IT WILL BE OVERWRITTEN.
4
- __version__ = '0.0.21'
4
+ __version__ = '0.0.22'
@@ -1 +0,0 @@
1
- mypy