aplos-nca-saas-sdk 0.0.19__tar.gz → 0.0.21__tar.gz

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Files changed (69) hide show
  1. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/PKG-INFO +1 -1
  2. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/pyproject.toml +1 -1
  3. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/tests/nca_analysis_test.py +12 -9
  4. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_analysis.py +4 -1
  5. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/version.py +1 -1
  6. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/.gitignore +0 -0
  7. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/.pypirc +0 -0
  8. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/.vscode/launch.json +0 -0
  9. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/.vscode/settings.json +0 -0
  10. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/LICENSE +0 -0
  11. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/README.md +0 -0
  12. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/devops/pypi/build.py +0 -0
  13. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/devops/pypi/readme.md +0 -0
  14. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/devops/requirements.txt +0 -0
  15. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/docs/images/API_Configuration_blur.png +0 -0
  16. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/docs/images/aplos-nca-commandline-cropped.png +0 -0
  17. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/docs/images/aplos-nca-commandline.png +0 -0
  18. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/mypy.ini +0 -0
  19. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/mypy_checks.py +0 -0
  20. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/readme.md +0 -0
  21. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/requirements.dev.txt +0 -0
  22. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/requirements.txt +0 -0
  23. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/run-checks.sh +0 -0
  24. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/__init__.py +0 -0
  25. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/_config_base.py +0 -0
  26. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/app_settings_config.py +0 -0
  27. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/config_sample.json +0 -0
  28. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/file_upload_config.py +0 -0
  29. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/login_config.py +0 -0
  30. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/nca_execution_config.py +0 -0
  31. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/configs/nca_validation_config.py +0 -0
  32. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/example_main.py +0 -0
  33. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/executions/config1.json +0 -0
  34. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.csv +0 -0
  35. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.dat +0 -0
  36. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.sas7bdat +0 -0
  37. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.xls +0 -0
  38. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.xlsx +0 -0
  39. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/files/uploads/input1.xpt +0 -0
  40. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/integration_test_base.py +0 -0
  41. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/integration_test_configurations.py +0 -0
  42. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/integration_test_factory.py +0 -0
  43. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/integration_test_response.py +0 -0
  44. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/integration_test_suite.py +0 -0
  45. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/readme.md +0 -0
  46. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/tests/app_configuration_test.py +0 -0
  47. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/tests/app_login_test.py +0 -0
  48. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/tests/file_upload_test.py +0 -0
  49. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/integration_testing/tests/nca_analysis_validation_test.py +0 -0
  50. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/_api_base.py +0 -0
  51. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/aws_cognito.py +0 -0
  52. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/aws_s3_presigned_payload.py +0 -0
  53. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/aws_s3_presigned_upload.py +0 -0
  54. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_app_configuration.py +0 -0
  55. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_authenticator.py +0 -0
  56. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_endpoints.py +0 -0
  57. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_file_download.py +0 -0
  58. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_file_upload.py +0 -0
  59. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/nca_resources/nca_validations.py +0 -0
  60. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/run_analysis_execution.py +0 -0
  61. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/sample_files/analysis_files/single_ev/config.json +0 -0
  62. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/sample_files/analysis_files/single_ev/input.csv +0 -0
  63. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/sample_files/analysis_files/single_ev/meta_data.json +0 -0
  64. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/utilities/commandline_args.py +0 -0
  65. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/utilities/environment_services.py +0 -0
  66. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/utilities/environment_vars.py +0 -0
  67. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/utilities/file_utility.py +0 -0
  68. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/src/aplos_nca_saas_sdk/utilities/http_utility.py +0 -0
  69. {aplos_nca_saas_sdk-0.0.19 → aplos_nca_saas_sdk-0.0.21}/tests/__init__.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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2
  Name: aplos_nca_saas_sdk
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- Version: 0.0.19
3
+ Version: 0.0.21
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4
  Summary: Aplos NCA SaaS SDK
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  Project-URL: Homepage, https://aplosanalytics.com/
6
6
  Project-URL: Documentation, https://docs.aplosanalytics.com/
@@ -26,7 +26,7 @@ keywords = [
26
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  "Clinical Trials"
27
27
  ]
28
28
 
29
- version = "0.0.19"
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+ version = "0.0.21"
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  authors = [
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  { name="Eric Wilson", email="eric.wilson@aplosanalytics.com" }
32
32
  ]
@@ -64,7 +64,7 @@ class NCAAnalysisTest(IntegrationTestBase):
64
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  config_data=nca_execution_config.config_data,
65
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  meta_data=nca_execution_config.meta_data,
66
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  wait_for_results=nca_execution_config.wait_for_results,
67
- wait_for_results_timeout=nca_execution_config.max_wait_in_seconds,
67
+ max_wait_in_seconds=nca_execution_config.max_wait_in_seconds,
68
68
  output_directory=nca_execution_config.output_dir,
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  unzip_after_download=False,
70
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  data_processing=nca_execution_config.data_processing,
@@ -76,14 +76,17 @@ class NCAAnalysisTest(IntegrationTestBase):
76
76
  logger.info(
77
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  {"message": "Execution complete. Verifying results download."}
78
78
  )
79
-
80
- expected_output_file = execution_response.get("results", {}).get("file")
81
- if expected_output_file is None:
82
- raise RuntimeError(
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- "Expected populated output_file from NCAExecution was None."
84
- )
85
- elif not Path(expected_output_file).is_file():
86
- raise RuntimeError("Expected downloaded file does not exist.")
79
+ status_code = execution_response.get("results", {}).get("status_code")
80
+ if status_code == 201:
81
+ pass # No output file expected
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+ else:
83
+ expected_output_file = execution_response.get("results", {}).get("file")
84
+ if expected_output_file is None:
85
+ raise RuntimeError(
86
+ "Expected populated output_file from NCAExecution was None."
87
+ )
88
+ elif not Path(expected_output_file).is_file():
89
+ raise RuntimeError("Expected downloaded file does not exist.")
87
90
 
88
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  except Exception as e: # pylint: disable=w0718
89
92
  test_response.error = str(e)
@@ -128,7 +128,8 @@ class NCAAnalysis(NCAApiBaseClass):
128
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  response["results"]["file"] = file_path
129
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  else:
130
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  self.log("Bypassed results download.")
131
-
131
+ response["results"]["status_code"] = 201
132
+ response["results"]["message"] = "Waiting for results download bypassed. Running Fast Executions."
132
133
  return response
133
134
 
134
135
  def __add_to_queue(
@@ -165,6 +166,8 @@ class NCAAnalysis(NCAApiBaseClass):
165
166
 
166
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  if full_payload:
167
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  submission = full_payload
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+ # we still need to add the file id at this point
170
+ submission["file"] = {"id": file_id}
168
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  else:
169
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  submission = {
170
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  "file": {"id": file_id},
@@ -1,4 +1,4 @@
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  # Aplos NCA SaaS SDK Version File
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2
  # This is automatically generated during the build process.
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3
  # DO NOT UPDATE IT DIRECTLY. IT WILL BE OVERWRITTEN.
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- __version__ = '0.0.19'
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+ __version__ = '0.0.21'