antspymm 0.9.9__tar.gz → 1.0.0__tar.gz

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Files changed (42) hide show
  1. {antspymm-0.9.9/antspymm.egg-info → antspymm-1.0.0}/PKG-INFO +1 -1
  2. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm/__init__.py +4 -0
  3. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm/mm.py +370 -45
  4. {antspymm-0.9.9 → antspymm-1.0.0/antspymm.egg-info}/PKG-INFO +1 -1
  5. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm.egg-info/SOURCES.txt +5 -0
  6. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm.egg-info/requires.txt +1 -1
  7. antspymm-1.0.0/docs/blind_qc.Rmd +134 -0
  8. antspymm-1.0.0/docs/blind_qc.html +3309 -0
  9. antspymm-1.0.0/docs/convert_adni_dti_to_nrg.R +41 -0
  10. {antspymm-0.9.9 → antspymm-1.0.0}/setup.py +1 -1
  11. antspymm-1.0.0/tests/test_deformation_gradient_reo.py +72 -0
  12. antspymm-1.0.0/tests/test_dwi_rebasing.py +106 -0
  13. {antspymm-0.9.9 → antspymm-1.0.0}/LICENSE +0 -0
  14. {antspymm-0.9.9 → antspymm-1.0.0}/MANIFEST.in +0 -0
  15. {antspymm-0.9.9 → antspymm-1.0.0}/README.md +0 -0
  16. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm.egg-info/dependency_links.txt +0 -0
  17. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm.egg-info/not-zip-safe +0 -0
  18. {antspymm-0.9.9 → antspymm-1.0.0}/antspymm.egg-info/top_level.txt +0 -0
  19. {antspymm-0.9.9 → antspymm-1.0.0}/docs/antspymm_data_dictionary.csv +0 -0
  20. {antspymm-0.9.9 → antspymm-1.0.0}/docs/bids_cohort_example.py +0 -0
  21. {antspymm-0.9.9 → antspymm-1.0.0}/docs/example_run_from_directory.py +0 -0
  22. {antspymm-0.9.9 → antspymm-1.0.0}/docs/make_dict_table.Rmd +0 -0
  23. {antspymm-0.9.9 → antspymm-1.0.0}/docs/nrg_cohort_example.py +0 -0
  24. {antspymm-0.9.9 → antspymm-1.0.0}/docs/outlierness.py +0 -0
  25. {antspymm-0.9.9 → antspymm-1.0.0}/docs/ukbb_to_nrg_processing.py +0 -0
  26. {antspymm-0.9.9 → antspymm-1.0.0}/docs/ukbb_to_nrg_processing2.py +0 -0
  27. {antspymm-0.9.9 → antspymm-1.0.0}/setup.cfg +0 -0
  28. {antspymm-0.9.9 → antspymm-1.0.0}/tests/mm.py +0 -0
  29. {antspymm-0.9.9 → antspymm-1.0.0}/tests/mm_nrg.py +0 -0
  30. {antspymm-0.9.9 → antspymm-1.0.0}/tests/outlierness.py +0 -0
  31. {antspymm-0.9.9 → antspymm-1.0.0}/tests/parallel_study_aggregation_example.py +0 -0
  32. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_bids_2_nrg.py +0 -0
  33. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_dti_recon.py +0 -0
  34. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_dti_reg.py +0 -0
  35. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_dwi_run.py +0 -0
  36. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_flair_run.py +0 -0
  37. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_joint_dti_recon.py +0 -0
  38. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_mm_csv.py +0 -0
  39. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_rsfmri_run.py +0 -0
  40. {antspymm-0.9.9 → antspymm-1.0.0}/tests/test_ukbb_rsfmri.py +0 -0
  41. {antspymm-0.9.9 → antspymm-1.0.0}/tests/testsr.py +0 -0
  42. {antspymm-0.9.9 → antspymm-1.0.0}/tests/visualize_tractogram.py +0 -0
{antspymm-0.9.9/antspymm.egg-info → antspymm-1.0.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: antspymm
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- Version: 0.9.9
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+ Version: 1.0.0
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  Summary: multi-channel/time-series medical image processing with antspyx
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  Home-page: https://github.com/stnava/ANTsPyMM
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  Author: Avants, Gosselin, Tustison, Reardon
{antspymm-0.9.9 → antspymm-1.0.0}/antspymm/__init__.py RENAMED
@@ -5,6 +5,10 @@ except:
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  pass
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  from .mm import get_data
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+ from .mm import get_dti
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+ from .mm import triangular_to_tensor
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+ from .mm import dti_numpy_to_image
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+ from .mm import transform_and_reorient_dti
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  from .mm import get_models
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  from .mm import nrg_format_path
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  from .mm import highest_quality_repeat