antspymm 0.9.7__tar.gz → 1.0.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {antspymm-0.9.7/antspymm.egg-info → antspymm-1.0.0}/PKG-INFO +12 -1
- {antspymm-0.9.7 → antspymm-1.0.0}/README.md +11 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm/__init__.py +6 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm/mm.py +638 -101
- {antspymm-0.9.7 → antspymm-1.0.0/antspymm.egg-info}/PKG-INFO +12 -1
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm.egg-info/SOURCES.txt +7 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm.egg-info/requires.txt +1 -1
- antspymm-1.0.0/docs/blind_qc.Rmd +134 -0
- antspymm-1.0.0/docs/blind_qc.html +3309 -0
- antspymm-1.0.0/docs/convert_adni_dti_to_nrg.R +41 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/setup.py +1 -1
- antspymm-1.0.0/tests/outlierness.py +22 -0
- antspymm-1.0.0/tests/parallel_study_aggregation_example.py +35 -0
- antspymm-1.0.0/tests/test_deformation_gradient_reo.py +72 -0
- antspymm-1.0.0/tests/test_dwi_rebasing.py +106 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/LICENSE +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/MANIFEST.in +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm.egg-info/dependency_links.txt +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm.egg-info/not-zip-safe +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/antspymm.egg-info/top_level.txt +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/antspymm_data_dictionary.csv +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/bids_cohort_example.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/example_run_from_directory.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/make_dict_table.Rmd +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/nrg_cohort_example.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/outlierness.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/ukbb_to_nrg_processing.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/docs/ukbb_to_nrg_processing2.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/setup.cfg +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/mm.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/mm_nrg.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_bids_2_nrg.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_dti_recon.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_dti_reg.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_dwi_run.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_flair_run.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_joint_dti_recon.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_mm_csv.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_rsfmri_run.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/test_ukbb_rsfmri.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/testsr.py +0 -0
- {antspymm-0.9.7 → antspymm-1.0.0}/tests/visualize_tractogram.py +0 -0
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Metadata-Version: 2.1
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Name: antspymm
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Version: 0.
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Version: 1.0.0
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Summary: multi-channel/time-series medical image processing with antspyx
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Home-page: https://github.com/stnava/ANTsPyMM
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Author: Avants, Gosselin, Tustison, Reardon
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documentation of functions [here](http://htmlpreview.github.io/?https://github.com/stnava/ANTsPyMM/blob/main/docs/antspymm/mm.html).
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achieved through four steps (recommended approach):
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1. organize data in NRG format
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2. perform blind QC
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3. compute outlierness per modality and select optimally matched modalities ( steps 3.1 and 3.2 )
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4. run the main antspymm function
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# first time setup
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```python
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documentation of functions [here](http://htmlpreview.github.io/?https://github.com/stnava/ANTsPyMM/blob/main/docs/antspymm/mm.html).
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achieved through four steps (recommended approach):
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1. organize data in NRG format
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2. perform blind QC
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3. compute outlierness per modality and select optimally matched modalities ( steps 3.1 and 3.2 )
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4. run the main antspymm function
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# first time setup
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```python
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pass
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from .mm import get_data
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from .mm import get_dti
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from .mm import triangular_to_tensor
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from .mm import dti_numpy_to_image
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from .mm import transform_and_reorient_dti
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from .mm import get_models
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from .mm import nrg_format_path
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from .mm import highest_quality_repeat
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from .mm import generate_mm_dataframe
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from .mm import collect_blind_qc_by_modality
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from .mm import get_valid_modalities
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from .mm import study_dataframe_from_matched_dataframe
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from .mm import merge_wides_to_study_dataframe
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