anemoi-utils 0.4.20__tar.gz → 0.4.22__tar.gz
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- anemoi_utils-0.4.22/.github/CODEOWNERS +8 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.pre-commit-config.yaml +2 -3
- anemoi_utils-0.4.22/.release-please-manifest.json +3 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/CHANGELOG.md +20 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/PKG-INFO +2 -1
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/pyproject.toml +2 -1
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/_version.py +2 -2
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/config.py +24 -1
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/rules.py +27 -0
- anemoi_utils-0.4.22/src/anemoi/utils/schemas/__init__.py +20 -0
- anemoi_utils-0.4.22/src/anemoi/utils/schemas/errors.py +54 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/testing.py +41 -6
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi_utils.egg-info/PKG-INFO +2 -1
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi_utils.egg-info/SOURCES.txt +2 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi_utils.egg-info/requires.txt +1 -0
- anemoi_utils-0.4.20/.github/CODEOWNERS +0 -6
- anemoi_utils-0.4.20/.release-please-manifest.json +0 -3
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.gitattributes +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/ci-hpc-config.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/dependabot.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/labeler.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/pull_request_template.md +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/release.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/downstream-ci-hpc.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/pr-conventional-commit.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/pr-label-conventional-commits.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/pr-label-file-based.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/pr-label-public.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/python-publish.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/python-pull-request.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/readthedocs-pr-update.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/release-please.yml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.gitignore +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.readthedocs.yaml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.release-please-config.json +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/CONTRIBUTORS.md +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/LICENSE +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/README.md +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/Makefile +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/_static/logo.png +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/_static/style.css +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/_templates/.gitkeep +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/_templates/apidoc/package.rst.jinja +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/conf.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/index.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/installing.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/checkpoints.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/config.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/dates.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/grib.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/humanize.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/provenance.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/s3.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/testing.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/modules/text.rst +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/docs/scripts/api_build.sh +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/setup.cfg +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/__init__.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/__main__.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/caching.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/checkpoints.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/cli.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/commands/__init__.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/commands/config.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/commands/requests.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/compatibility.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/dates.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/devtools.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/grib.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/grids.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/hindcasts.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/humanize.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/logs.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/mars/__init__.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/mars/mars.yaml +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/mars/requests.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/provenance.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/registry.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/remote/__init__.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/remote/s3.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/remote/ssh.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/s3.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/sanitise.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/sanitize.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/text.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi/utils/timer.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi_utils.egg-info/dependency_links.txt +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi_utils.egg-info/entry_points.txt +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/src/anemoi_utils.egg-info/top_level.txt +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test-transfer-data/directory/b/c/x +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test-transfer-data/directory/b/y +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test-transfer-data/directory/exotic filename ;^/"'[=.,#]()/303/252/303/274/303/247/303/262/342/234/205.txt" +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test-transfer-data/directory/z +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test-transfer-data/file +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_caching.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_compatibility.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_dates.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_frequency.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_grids.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_provenance.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_remote.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_sanetise.py +0 -0
- {anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/tests/test_utils.py +0 -0
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Please add your functional changes to the appropriate section in the PR.
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Keep it human-readable, your future self will thank you!
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## [0.4.22](https://github.com/ecmwf/anemoi-utils/compare/0.4.21...0.4.22) (2025-04-10)
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### Bug Fixes
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* do not write to existing dir ([#148](https://github.com/ecmwf/anemoi-utils/issues/148)) ([38c6db6](https://github.com/ecmwf/anemoi-utils/commit/38c6db62c113e093d11c49b0fc398587ee89946c))
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* remove archive file after unpacking ([#145](https://github.com/ecmwf/anemoi-utils/issues/145)) ([790e2a3](https://github.com/ecmwf/anemoi-utils/commit/790e2a3370db3d5c275f95b920926d5a01f894a7))
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## [0.4.21](https://github.com/ecmwf/anemoi-utils/compare/0.4.20...0.4.21) (2025-04-07)
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### Features
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* allow temporary settings ([#143](https://github.com/ecmwf/anemoi-utils/issues/143)) ([38cefb5](https://github.com/ecmwf/anemoi-utils/commit/38cefb5c4ebd4e496d2c332e1d1d8b86d551615c))
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### Bug Fixes
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* pydantic schemas ([#141](https://github.com/ecmwf/anemoi-utils/issues/141)) ([c30f804](https://github.com/ecmwf/anemoi-utils/commit/c30f804012a4200eee69f5fb0708d4af760cb5f7))
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## [0.4.20](https://github.com/ecmwf/anemoi-utils/compare/0.4.19...0.4.20) (2025-04-04)
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Version: 0.4.
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Version: 0.4.22
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Summary: A package to hold various functions to support training of ML models on ECMWF data.
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Author-email: "European Centre for Medium-Range Weather Forecasts (ECMWF)" <software.support@ecmwf.int>
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License: Apache License
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-------
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The number of rules in the RuleSet.
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The index of the rule to retrieve.
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-------
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Rule
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The rule at the specified index.
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"""
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return self.rules[index]
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@@ -0,0 +1,20 @@
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# (C) Copyright 2025 ECMWF.
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#
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# This software is licensed under the terms of the Apache Licence Version 2.0
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# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
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# In applying this licence, ECMWF does not waive the privileges and immunities
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# granted to it by virtue of its status as an intergovernmental organisation
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# nor does it submit to any jurisdiction.
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from pydantic import BaseModel as PydanticBaseModel
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class BaseModel(PydanticBaseModel):
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class Config:
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"""Pydantic BaseModel configuration."""
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use_attribute_docstrings = True
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use_enum_values = True
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validate_assignment = True
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validate_default = True
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extra = "forbid"
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@@ -0,0 +1,54 @@
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1
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+
# (C) Copyright 2025 ECMWF.
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+
#
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3
|
+
# This software is licensed under the terms of the Apache Licence Version 2.0
|
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+
# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
|
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5
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+
# In applying this licence, ECMWF does not waive the privileges and immunities
|
|
6
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+
# granted to it by virtue of its status as an intergovernmental organisation
|
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7
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+
# nor does it submit to any jurisdiction.
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+
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9
|
+
from collections.abc import Iterator
|
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+
from typing import Any
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+
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+
from pydantic import BaseModel as PydanticBaseModel
|
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from pydantic import ValidationError
|
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+
from pydantic_core import ErrorDetails
|
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+
|
|
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+
CUSTOM_MESSAGES = {
|
|
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|
+
"missing": "A config entry seems to be missing. If not please check for any typos.",
|
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|
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"extra_forbidden": "Extra entries in the config are forebidden. Please check for typos.",
|
|
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|
+
}
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|
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|
+
def convert_errors(e: ValidationError, custom_messages: dict[str, str]) -> list[ErrorDetails]:
|
|
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|
+
new_errors: list[ErrorDetails] = []
|
|
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|
+
for error in e.errors():
|
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|
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custom_message = custom_messages.get(error["type"])
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|
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if custom_message:
|
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ctx = error.get("ctx")
|
|
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|
+
error["msg"] = custom_message.format(**ctx) if ctx else custom_message
|
|
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|
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new_errors.append(error)
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return new_errors
|
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|
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|
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class ValidationError(Exception):
|
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pass
|
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+
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|
+
def allowed_values(v: Any, values: list[Any]) -> Any:
|
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|
+
if v not in values:
|
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|
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msg = {f"Value {v} not in {values}"}
|
|
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|
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raise ValidationError(msg)
|
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return v
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+
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|
+
def required_fields(model: type[PydanticBaseModel], recursive: bool = False) -> Iterator[str]:
|
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|
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for name, field in model.model_fields.items():
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|
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continue
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t = field.annotation
|
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|
+
if recursive and isinstance(t, type) and issubclass(t, PydanticBaseModel):
|
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yield from required_fields(t, recursive=True)
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else:
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yield name
|
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@@ -68,6 +68,23 @@ def _check_path(path: str) -> None:
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assert not path.startswith("."), f"Path '{path}' should not start with '.'"
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+
def _temporary_directory_for_test_data(path: str) -> str:
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"""Get the temporary directory for a test dataset.
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Parameters
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----------
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path : str
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The relative path to the test data in the object store.
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|
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+
Returns
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|
+
-------
|
|
81
|
+
str
|
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|
+
The path to the temporary directory.
|
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|
+
"""
|
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|
+
_check_path(path)
|
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|
+
return os.path.normpath(os.path.join(_temporary_directory(), path))
|
|
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|
+
|
|
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|
+
|
|
71
88
|
def url_for_test_data(path: str) -> str:
|
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|
"""Generate the URL for the test data based on the given path.
|
|
73
90
|
|
|
@@ -101,12 +118,11 @@ def get_test_data(path: str, gzipped=False) -> str:
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101
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|
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|
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|
The local path to the downloaded test data.
|
|
103
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|
"""
|
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|
-
_check_path(path)
|
|
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|
|
|
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|
if _offline():
|
|
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|
raise RuntimeError("Offline mode: cannot download test data, add @pytest.mark.skipif(not offline(),...)")
|
|
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|
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|
-
target =
|
|
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|
+
target = _temporary_directory_for_test_data(path)
|
|
110
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|
with lock:
|
|
111
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|
if os.path.exists(target):
|
|
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|
return target
|
|
@@ -153,16 +169,22 @@ def get_test_archive(path: str, extension=".extracted") -> str:
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|
with lock:
|
|
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|
|
|
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|
+
target = _temporary_directory_for_test_data(path) + extension
|
|
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|
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|
|
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|
+
if os.path.exists(target):
|
|
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|
+
return target
|
|
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|
+
|
|
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|
archive = get_test_data(path)
|
|
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|
-
target = archive + extension
|
|
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|
|
|
159
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|
shutil.unpack_archive(archive, os.path.dirname(target) + ".tmp")
|
|
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|
os.rename(os.path.dirname(target) + ".tmp", target)
|
|
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|
|
|
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|
+
os.remove(archive)
|
|
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|
+
|
|
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|
return target
|
|
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|
|
|
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|
|
|
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|
-
def packages_installed(*names) -> bool:
|
|
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|
+
def packages_installed(*names: str) -> bool:
|
|
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|
"""Check if all the given packages are installed.
|
|
167
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|
|
|
168
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|
Use this function to check if the required packages are installed before running tests.
|
|
@@ -196,7 +218,7 @@ def packages_installed(*names) -> bool:
|
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|
196
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|
return True
|
|
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|
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|
|
|
199
|
-
def _missing_packages(*names) -> list[str]:
|
|
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|
+
def _missing_packages(*names: str) -> list[str]:
|
|
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|
"""Check if the given packages are missing.
|
|
201
223
|
|
|
202
224
|
Use this function to check if the required packages are missing before running tests.
|
|
@@ -254,7 +276,20 @@ skip_if_offline = pytest.mark.skipif(_offline(), reason="No internet connection"
|
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|
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|
skip_slow_tests = pytest.mark.skipif(not _run_slow_tests(), reason="Skipping slow tests")
|
|
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|
|
257
|
-
def skip_missing_packages(*names):
|
|
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|
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def skip_missing_packages(*names: str) -> callable:
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|
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|
+
"""Skip a test if any of the specified packages are missing.
|
|
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|
+
|
|
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|
+
Parameters
|
|
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|
+
----------
|
|
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|
+
names : str
|
|
285
|
+
The names of the packages to check.
|
|
286
|
+
|
|
287
|
+
Returns
|
|
288
|
+
-------
|
|
289
|
+
Callable
|
|
290
|
+
A decorator that skips the test if any of the specified packages are missing.
|
|
291
|
+
"""
|
|
292
|
+
|
|
258
293
|
missing = [f"'{p}'" for p in _missing_packages(*names)]
|
|
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|
|
|
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|
if len(missing) == 0:
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: anemoi-utils
|
|
3
|
-
Version: 0.4.
|
|
3
|
+
Version: 0.4.22
|
|
4
4
|
Summary: A package to hold various functions to support training of ML models on ECMWF data.
|
|
5
5
|
Author-email: "European Centre for Medium-Range Weather Forecasts (ECMWF)" <software.support@ecmwf.int>
|
|
6
6
|
License: Apache License
|
|
@@ -228,6 +228,7 @@ Requires-Dist: aniso8601
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|
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|
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|
Requires-Dist: multiurl
|
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|
Requires-Dist: numpy
|
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|
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Requires-Dist: pydantic>=2.9
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Requires-Dist: pyyaml
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|
Requires-Dist: tomli; python_version < "3.11"
|
|
@@ -75,6 +75,8 @@ src/anemoi/utils/mars/requests.py
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src/anemoi/utils/remote/__init__.py
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|
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src/anemoi/utils/remote/ssh.py
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src/anemoi/utils/schemas/__init__.py
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src/anemoi/utils/schemas/errors.py
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src/anemoi_utils.egg-info/PKG-INFO
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src/anemoi_utils.egg-info/SOURCES.txt
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src/anemoi_utils.egg-info/dependency_links.txt
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@@ -1,6 +0,0 @@
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|
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1
|
-
# CODEOWNERS file
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|
2
|
-
|
|
3
|
-
# Protect workflow files
|
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4
|
-
/.github/ @theissenhelen @jesperdramsch @gmertes @b8raoult @floriankrb @anaprietonem @HCookie @JPXKQX @mchantry
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5
|
-
/.pre-commit-config.yaml @theissenhelen @jesperdramsch @gmertes @b8raoult @floriankrb @anaprietonem @HCookie @JPXKQX @mchantry
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|
-
/pyproject.toml @theissenhelen @jesperdramsch @gmertes @b8raoult @floriankrb @anaprietonem @HCookie @JPXKQX @mchantry
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{anemoi_utils-0.4.20 → anemoi_utils-0.4.22}/.github/workflows/pr-label-conventional-commits.yml
RENAMED
|
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