anemoi-datasets 0.5.19__tar.gz → 0.5.21__tar.gz

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Files changed (406) hide show
  1. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.gitignore +5 -0
  2. anemoi_datasets-0.5.21/.readthedocs.yaml +19 -0
  3. anemoi_datasets-0.5.21/.release-please-manifest.json +3 -0
  4. anemoi_datasets-0.5.21/03-constant-fields.rst +3 -0
  5. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/CHANGELOG.md +40 -0
  6. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/PKG-INFO +11 -4
  7. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/Makefile +1 -0
  8. anemoi_datasets-0.5.21/docs/_templates/apidoc/package.rst.jinja +55 -0
  9. anemoi_datasets-0.5.21/docs/cli/compare-lam.rst +51 -0
  10. anemoi_datasets-0.5.21/docs/cli/grib-index.rst +24 -0
  11. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/cli/introduction.rst +1 -0
  12. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/filters/orog_to_z.rst +2 -2
  13. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/filters/regrid.rst +8 -9
  14. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/filters/rename.rst +4 -4
  15. anemoi_datasets-0.5.21/docs/datasets/building/filters/sum.rst +13 -0
  16. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/filters/wz_to_w.rst +2 -2
  17. anemoi_datasets-0.5.21/docs/datasets/building/filters/yaml/orog_to_z.yaml +11 -0
  18. anemoi_datasets-0.5.21/docs/datasets/building/filters/yaml/regrid1.yaml +11 -0
  19. anemoi_datasets-0.5.21/docs/datasets/building/filters/yaml/regrid2.yaml +9 -0
  20. anemoi_datasets-0.5.21/docs/datasets/building/filters/yaml/rename.yaml +13 -0
  21. anemoi_datasets-0.5.21/docs/datasets/building/filters/yaml/sum.yaml +15 -0
  22. anemoi_datasets-0.5.21/docs/datasets/building/filters/yaml/wz_to_w.yaml +11 -0
  23. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/filters.rst +1 -1
  24. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/handling-missing-dates.rst +2 -1
  25. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/handling-missing-values.rst +2 -2
  26. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/incremental.rst +1 -1
  27. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/introduction.rst +7 -7
  28. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/naming-conventions.rst +10 -10
  29. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/naming-variables.rst +3 -3
  30. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/operations.rst +8 -8
  31. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/accumulations.rst +11 -12
  32. anemoi_datasets-0.5.21/docs/datasets/building/sources/anemoi-dataset.rst +19 -0
  33. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/cds.rst +3 -3
  34. anemoi_datasets-0.5.19/docs/datasets/building/sources/eccc_fstd.rst → anemoi_datasets-0.5.21/docs/datasets/building/sources/eccc-fstd.rst +5 -3
  35. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/forcings.rst +17 -17
  36. anemoi_datasets-0.5.21/docs/datasets/building/sources/grib-index.rst +11 -0
  37. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/grib.rst +10 -6
  38. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/hindcasts.rst +2 -2
  39. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/mars.rst +4 -4
  40. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/netcdf.rst +3 -1
  41. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/opendap.rst +2 -0
  42. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/recentre.rst +5 -5
  43. anemoi_datasets-0.5.21/docs/datasets/building/sources/repeated-dates.rst +39 -0
  44. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/xarray-based.rst +7 -5
  45. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/xarray-kerchunk.rst +2 -0
  46. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/xarray-zarr.rst +7 -5
  47. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/yaml/accumulations1.yaml +1 -1
  48. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/accumulations2.yaml +6 -0
  49. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/anemoi-dataset.yaml +11 -0
  50. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/forcings.yaml +11 -0
  51. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/grib2.yaml +5 -0
  52. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/yaml/mars-cds.yaml +1 -1
  53. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/mars1.yaml +5 -0
  54. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/mars2.yaml +10 -0
  55. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/yaml/recentre.yaml +3 -3
  56. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/repeated_dates1.yaml → anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/repeated-dates1.yaml +1 -1
  57. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/repeated-dates2.yaml +6 -0
  58. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/repeated-dates3.yaml +8 -0
  59. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/repeated-dates4.yaml +9 -0
  60. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/yaml/xarray-kerchunk.yaml +1 -1
  61. anemoi_datasets-0.5.21/docs/datasets/building/sources/yaml/xarray-zarr.yaml +22 -0
  62. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources/yaml/zenodo.yaml +1 -1
  63. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/sources.rst +10 -9
  64. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/building/statistics.rst +10 -11
  65. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/introduction.rst +3 -3
  66. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/combining.rst +23 -22
  67. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/configuration.rst +2 -2
  68. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/ensembles.rst +1 -1
  69. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/grids.rst +24 -0
  70. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/introduction.rst +1 -1
  71. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/matching.rst +1 -1
  72. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/methods.rst +24 -15
  73. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/miscellaneous.rst +1 -1
  74. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/missing.rst +14 -14
  75. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/opening.rst +1 -1
  76. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/other.rst +2 -2
  77. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/selecting.rst +8 -8
  78. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/statistics.rst +2 -2
  79. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/subsetting.rst +2 -2
  80. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/datasets/using/zip.rst +7 -7
  81. anemoi_datasets-0.5.21/docs/howtos/create/01-grib-data.rst +165 -0
  82. anemoi_datasets-0.5.21/docs/howtos/create/02-cf-data.rst +117 -0
  83. anemoi_datasets-0.5.21/docs/howtos/create/03-constant-fields.rst +7 -0
  84. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-flavour1.yaml +8 -0
  85. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-flavour2.yaml +10 -0
  86. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-flavour3.yaml +12 -0
  87. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-flavour4.yaml +23 -0
  88. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-recipe1.yaml +9 -0
  89. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-recipe2.yaml +10 -0
  90. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-recipe3.yaml +9 -0
  91. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-recipe4.yaml +10 -0
  92. anemoi_datasets-0.5.21/docs/howtos/create/yaml/grib-recipe5.yaml +17 -0
  93. anemoi_datasets-0.5.21/docs/howtos/create/yaml/netcdf1.yaml +9 -0
  94. anemoi_datasets-0.5.21/docs/howtos/create/yaml/opendap1.yaml +8 -0
  95. anemoi_datasets-0.5.21/docs/howtos/create/yaml/xarray-flavour1.yaml +11 -0
  96. anemoi_datasets-0.5.21/docs/howtos/create/yaml/xarray-patch1.yaml +11 -0
  97. anemoi_datasets-0.5.21/docs/howtos/create/yaml/xarray-patch2.yaml +6 -0
  98. anemoi_datasets-0.5.21/docs/howtos/create/yaml/zarr1.yaml +8 -0
  99. anemoi_datasets-0.5.21/docs/howtos/introduction.rst +37 -0
  100. anemoi_datasets-0.5.21/docs/howtos/usage/01-interpolate-step-dataset-combination.rst +45 -0
  101. anemoi_datasets-0.5.21/docs/howtos/usage/code/interpolate1.py +19 -0
  102. anemoi_datasets-0.5.21/docs/howtos/usage/code/interpolate2.py +19 -0
  103. anemoi_datasets-0.5.21/docs/howtos/usage/yaml/interpolate1.yaml +9 -0
  104. anemoi_datasets-0.5.21/docs/howtos/usage/yaml/interpolate2.yaml +8 -0
  105. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/index.rst +19 -10
  106. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/installing.rst +6 -6
  107. anemoi_datasets-0.5.21/docs/modules/dataset.rst +10 -0
  108. anemoi_datasets-0.5.21/docs/modules/filters.rst +5 -0
  109. anemoi_datasets-0.5.21/docs/modules/sources.rst +5 -0
  110. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/overview.rst +5 -5
  111. anemoi_datasets-0.5.21/docs/scripts/api_build.sh +13 -0
  112. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/docs/usage/getting_started.rst +3 -3
  113. anemoi_datasets-0.5.21/docs/using/code/trimedge1_.py +1 -0
  114. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/pyproject.toml +13 -5
  115. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/_version.py +2 -2
  116. anemoi_datasets-0.5.21/src/anemoi/datasets/commands/compare-lam.py +401 -0
  117. anemoi_datasets-0.5.21/src/anemoi/datasets/commands/grib-index.py +111 -0
  118. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/commands/inspect.py +2 -2
  119. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/__init__.py +1 -1
  120. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/filters/pressure_level_relative_humidity_to_specific_humidity.py +3 -1
  121. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/filters/pressure_level_specific_humidity_to_relative_humidity.py +3 -1
  122. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/filters/wz_to_w.py +3 -2
  123. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/input/action.py +2 -0
  124. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/input/result.py +1 -1
  125. anemoi_datasets-0.5.21/src/anemoi/datasets/create/sources/anemoi_dataset.py +73 -0
  126. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/sources/forcings.py +1 -1
  127. anemoi_datasets-0.5.21/src/anemoi/datasets/create/sources/grib.py +142 -0
  128. anemoi_datasets-0.5.21/src/anemoi/datasets/create/sources/grib_index.py +614 -0
  129. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/sources/xarray_support/__init__.py +1 -1
  130. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/sources/xarray_support/fieldlist.py +2 -2
  131. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/sources/xarray_support/flavour.py +6 -0
  132. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/writer.py +1 -1
  133. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/__init__.py +16 -0
  134. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/complement.py +4 -1
  135. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/dataset.py +14 -0
  136. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/interpolate.py +76 -0
  137. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/masked.py +77 -0
  138. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/misc.py +159 -0
  139. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/grids.py +8 -2
  140. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi_datasets.egg-info/PKG-INFO +11 -4
  141. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi_datasets.egg-info/SOURCES.txt +48 -9
  142. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi_datasets.egg-info/requires.txt +10 -3
  143. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/create/test_create.py +4 -0
  144. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/create/test_sources.py +9 -10
  145. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/test_data.py +17 -6
  146. anemoi_datasets-0.5.21/tests/test_data_gridded.py +551 -0
  147. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/xarray/test_opendap.py +4 -5
  148. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/xarray/test_samples.py +4 -5
  149. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/xarray/test_zarr.py +14 -12
  150. anemoi_datasets-0.5.19/.readthedocs.yaml +0 -16
  151. anemoi_datasets-0.5.19/.release-please-manifest.json +0 -3
  152. anemoi_datasets-0.5.19/docs/datasets/building/filters/sum.rst +0 -13
  153. anemoi_datasets-0.5.19/docs/datasets/building/filters/yaml/orog_to_z.yaml +0 -10
  154. anemoi_datasets-0.5.19/docs/datasets/building/filters/yaml/regrid1.yaml +0 -10
  155. anemoi_datasets-0.5.19/docs/datasets/building/filters/yaml/regrid2.yaml +0 -8
  156. anemoi_datasets-0.5.19/docs/datasets/building/filters/yaml/rename.yaml +0 -11
  157. anemoi_datasets-0.5.19/docs/datasets/building/filters/yaml/sum.yaml +0 -13
  158. anemoi_datasets-0.5.19/docs/datasets/building/filters/yaml/wz_to_w.yaml +0 -10
  159. anemoi_datasets-0.5.19/docs/datasets/building/sources/repeated_dates.rst +0 -39
  160. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/accumulations2.yaml +0 -6
  161. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/forcings.yaml +0 -11
  162. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/grib2.yaml +0 -5
  163. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/mars1.yaml +0 -5
  164. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/mars2.yaml +0 -10
  165. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/repeated_dates2.yaml +0 -6
  166. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/repeated_dates3.yaml +0 -8
  167. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/repeated_dates4.yaml +0 -9
  168. anemoi_datasets-0.5.19/docs/datasets/building/sources/yaml/xarray-zarr.yaml +0 -22
  169. anemoi_datasets-0.5.19/docs/modules/create.rst +0 -8
  170. anemoi_datasets-0.5.19/docs/modules/data.rst +0 -15
  171. anemoi_datasets-0.5.19/src/anemoi/datasets/create/sources/grib.py +0 -297
  172. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.gitattributes +0 -0
  173. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/CODEOWNERS +0 -0
  174. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  175. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/ci-hpc-config.yml +0 -0
  176. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/dependabot.yml +0 -0
  177. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/labeler.yml +0 -0
  178. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/pull_request_template.md +0 -0
  179. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/release.yml +0 -0
  180. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/workflows/downstream-ci-hpc.yml +0 -0
  181. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/workflows/pr-conventional-commit.yml +0 -0
  182. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/workflows/pr-label-conventional-commits.yml +0 -0
  183. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/.github/workflows/pr-label-file-based.yml +0 -0
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  346. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/statistics/__init__.py +0 -0
  347. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/statistics/summary.py +0 -0
  348. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/testing.py +0 -0
  349. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/typing.py +0 -0
  350. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/utils.py +0 -0
  351. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/create/zarr.py +0 -0
  352. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/concat.py +0 -0
  353. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/debug.css +0 -0
  354. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/debug.py +0 -0
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  356. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/fill_missing.py +0 -0
  357. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/forwards.py +0 -0
  358. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/grids.py +0 -0
  359. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/indexing.py +0 -0
  360. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/join.py +0 -0
  361. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/merge.py +0 -0
  362. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/missing.py +0 -0
  363. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/rescale.py +0 -0
  364. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/select.py +0 -0
  365. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/statistics.py +0 -0
  366. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/stores.py +0 -0
  367. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/subset.py +0 -0
  368. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/unchecked.py +0 -0
  369. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/data/xy.py +0 -0
  370. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/dates/__init__.py +0 -0
  371. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/dates/groups.py +0 -0
  372. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/testing.py +0 -0
  373. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/src/anemoi/datasets/utils/__init__.py +0 -0
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  385. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/create/run.sh +0 -0
  386. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/create-perturbations-full.yaml +0 -0
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  389. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/test_dates.py +0 -0
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  391. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tests/xarray/test_netcdf.py +0 -0
  392. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/.gitignore +0 -0
  393. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/examples/Makefile +0 -0
  394. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/examples/an-oper-2023-2023-2p5-6h-v1.yaml +0 -0
  395. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/grids/Makefile +0 -0
  396. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/grids/grids.ipynb +0 -0
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  404. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/grids/grids_multilam.ipynb +0 -0
  405. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/make-sample-dataset.py +0 -0
  406. {anemoi_datasets-0.5.19 → anemoi_datasets-0.5.21}/tools/upload-sample-dataset.py +0 -0
@@ -135,3 +135,8 @@ _version.py
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  *.to_upload
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  tempCodeRunnerFile.python
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  Untitled-*.py
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+ *.zip
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+ *.json
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+ *.db
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+ *.tgz
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+ _api/
@@ -0,0 +1,19 @@
1
+ version: 2
2
+
3
+ build:
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+ os: ubuntu-22.04
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+ tools:
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+ python: "3.11"
7
+ # jobs:
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+ # pre_build:
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+ # - bash docs/scripts/api_build.sh
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+
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+ sphinx:
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+ configuration: docs/conf.py
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+
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+ python:
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+ install:
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+ - method: pip
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+ path: .
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+ extra_requirements:
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+ - docs
@@ -0,0 +1,3 @@
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+ {
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+ ".": "0.5.21"
3
+ }
@@ -0,0 +1,3 @@
1
+ ########################
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+ Adding constant fields
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+ ########################
@@ -8,6 +8,46 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
8
8
  Please add your functional changes to the appropriate section in the PR.
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9
  Keep it human-readable, your future self will thank you!
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10
 
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+ ## [0.5.21](https://github.com/ecmwf/anemoi-datasets/compare/0.5.20...0.5.21) (2025-04-08)
12
+
13
+
14
+ ### Features
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+
16
+ * more tests ([#277](https://github.com/ecmwf/anemoi-datasets/issues/277)) ([0ea7d46](https://github.com/ecmwf/anemoi-datasets/commit/0ea7d46a61aaa4381f8eb75b2623033bd404da5b))
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+
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+
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+ ### Bug Fixes
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+
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+ * grib-index command default ([#275](https://github.com/ecmwf/anemoi-datasets/issues/275)) ([04a37d8](https://github.com/ecmwf/anemoi-datasets/commit/04a37d8a046dc6b314e9f2376c69f1824cbfa43d))
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+ * pin version of numcodecs ([#285](https://github.com/ecmwf/anemoi-datasets/issues/285)) ([d86f317](https://github.com/ecmwf/anemoi-datasets/commit/d86f317981a312438a19323d5d67e1b31f80cf23))
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+ * update version of transform ([#284](https://github.com/ecmwf/anemoi-datasets/issues/284)) ([e72cdde](https://github.com/ecmwf/anemoi-datasets/commit/e72cddedd8160a27a9e63e2581f4fcc1a91cd8b6))
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+
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+
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+ ### Documentation
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+
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+ * some cleanup ([#276](https://github.com/ecmwf/anemoi-datasets/issues/276)) ([496b82a](https://github.com/ecmwf/anemoi-datasets/commit/496b82a5e10119c1fd27a58a85d5964fcad3c7bb))
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+ * time interpolation example ([#274](https://github.com/ecmwf/anemoi-datasets/issues/274)) ([9d19bd6](https://github.com/ecmwf/anemoi-datasets/commit/9d19bd6bc3c8e0c25718a05d670357936ec99a8b))
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+ * update documentation ([#271](https://github.com/ecmwf/anemoi-datasets/issues/271)) ([85ea386](https://github.com/ecmwf/anemoi-datasets/commit/85ea38690e7e8fab4dbac5c5b4d10eafdabde766))
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+
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+ ## [0.5.20](https://github.com/ecmwf/anemoi-datasets/compare/0.5.19...0.5.20) (2025-03-31)
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+
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+
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+ ### Features
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+
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+ * interpolate nearest spatial ([#260](https://github.com/ecmwf/anemoi-datasets/issues/260)) ([e6c9af4](https://github.com/ecmwf/anemoi-datasets/commit/e6c9af48dca7292940a8b10f2804e9d456b6bccc))
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+ * new data sources ([#258](https://github.com/ecmwf/anemoi-datasets/issues/258)) ([708c816](https://github.com/ecmwf/anemoi-datasets/commit/708c816b80ae30781f42442e0e9d8d70fed2371c))
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+ * save opened anemoi_dataset ([#259](https://github.com/ecmwf/anemoi-datasets/issues/259)) ([4759dd9](https://github.com/ecmwf/anemoi-datasets/commit/4759dd9da67ece246e691eb6be4637ef6bc0b157))
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+
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+
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+ ### Bug Fixes
43
+
44
+ * Remove hardcoded indices and get pressure levels from keys directly ([#257](https://github.com/ecmwf/anemoi-datasets/issues/257)) ([777fbac](https://github.com/ecmwf/anemoi-datasets/commit/777fbac9fb09afd6e77ee13f8442ccbb3efb73f8))
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+
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+
47
+ ### Documentation
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+
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+ * Add API Docs ([#255](https://github.com/ecmwf/anemoi-datasets/issues/255)) ([be13424](https://github.com/ecmwf/anemoi-datasets/commit/be1342400552f520b64f4f0fdb29d39ee51d81fe))
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+
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51
  ## [0.5.19](https://github.com/ecmwf/anemoi-datasets/compare/0.5.18...0.5.19) (2025-03-27)
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@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
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  Name: anemoi-datasets
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- Version: 0.5.19
3
+ Version: 0.5.21
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4
  Summary: A package to hold various functions to support training of ML models on ECMWF data.
5
5
  Author-email: "European Centre for Medium-Range Weather Forecasts (ECMWF)" <software.support@ecmwf.int>
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6
  License: Apache License
@@ -205,6 +205,7 @@ License: Apache License
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205
  See the License for the specific language governing permissions and
206
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  limitations under the License.
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207
 
208
+ Project-URL: Changelog, https://github.com/ecmwf/anemoi-datasets/CHANGELOG.md
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  Project-URL: Documentation, https://anemoi-datasets.readthedocs.io/
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  Project-URL: Homepage, https://github.com/ecmwf/anemoi-datasets/
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  Project-URL: Issues, https://github.com/ecmwf/anemoi-datasets/issues
@@ -224,17 +225,22 @@ Classifier: Programming Language :: Python :: Implementation :: CPython
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  Classifier: Programming Language :: Python :: Implementation :: PyPy
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  Requires-Python: >=3.9
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  License-File: LICENSE
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- Requires-Dist: anemoi-transform>=0.1.4
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- Requires-Dist: anemoi-utils[provenance]>=0.4.16
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+ Requires-Dist: anemoi-transform>=0.1.9
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+ Requires-Dist: anemoi-utils[provenance]>=0.4.19
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  Requires-Dist: cfunits
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+ Requires-Dist: numcodecs<0.16
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  Requires-Dist: numpy
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  Requires-Dist: pyyaml
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  Requires-Dist: semantic-version
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  Requires-Dist: tqdm
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  Requires-Dist: zarr<=2.18.4
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  Provides-Extra: all
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- Requires-Dist: anemoi-datasets[create,remote,xarray]; extra == "all"
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+ Requires-Dist: anemoi-datasets[comparelam,create,remote,xarray]; extra == "all"
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+ Provides-Extra: comparelam
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+ Requires-Dist: prettytable; extra == "comparelam"
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+ Requires-Dist: termcolor; extra == "comparelam"
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  Provides-Extra: create
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+ Requires-Dist: cachetools; extra == "create"
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  Requires-Dist: earthkit-data[mars]>=0.12.4; extra == "create"
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  Requires-Dist: earthkit-geo>=0.3; extra == "create"
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  Requires-Dist: earthkit-meteo>=0.3; extra == "create"
@@ -244,6 +250,7 @@ Requires-Dist: pyproj>=3; extra == "create"
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  Provides-Extra: dev
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  Requires-Dist: anemoi-datasets[all,docs,tests]; extra == "dev"
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  Provides-Extra: docs
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+ Requires-Dist: anemoi-datasets[all]; extra == "docs"
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  Requires-Dist: nbsphinx; extra == "docs"
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  Requires-Dist: pandoc; extra == "docs"
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  Requires-Dist: sphinx; extra == "docs"
@@ -19,4 +19,5 @@ help:
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  # Catch-all target: route all unknown targets to Sphinx using the new
20
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  # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
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  %: Makefile
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+ bash $(SOURCEDIR)/scripts/api_build.sh
22
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  @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
@@ -0,0 +1,55 @@
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+ {%- macro automodule(modname, options) -%}
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+ .. automodule:: {{ modname }}
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+ {%- for option in options %}
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+ :{{ option }}:
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+ {%- endfor %}
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+ {%- endmacro %}
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+
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+ {%- macro toctree(docnames) -%}
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+ .. toctree::
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+ :maxdepth: {{ maxdepth }}
11
+ {% for docname in docnames %}
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+ {{ docname }}
13
+ {%- endfor %}
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+ {%- endmacro %}
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+
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+ {%- if is_namespace %}
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+ {{- pkgname.split(".")[1:] | join(".") | e | heading }}
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+ {% else %}
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+ {{- pkgname.split(".")[1:] | join(" ") | e | heading }}
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+ {% endif %}
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+
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+ {%- if is_namespace %}
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+ .. py:module:: {{ pkgname }}
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+ {% endif %}
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+
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+ {%- if modulefirst and not is_namespace %}
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+ {{ automodule(["anemoi", pkgname] | join("."), [""]) }}
28
+ {% endif %}
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+
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+ {%- if subpackages %}
31
+ Subpackages
32
+ -----------
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+
34
+ {{ toctree(subpackages) }}
35
+ {% endif %}
36
+
37
+ {%- if submodules %}
38
+ {% if separatemodules %}
39
+ {{ toctree(submodules) }}
40
+ {% else %}
41
+ {%- for submodule in submodules %}
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+ {% if show_headings %}
43
+ {{- submodule.split(".")[2:] | join(".") | e | heading(2) }}
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+ {% endif %}
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+ {{ automodule(["anemoi", submodule] | join("."), automodule_options) }}
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+ {% endfor %}
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+ {%- endif %}
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+ {%- endif %}
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+
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+ {%- if not modulefirst and not is_namespace %}
51
+ Module contents
52
+ ---------------
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+
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+ {{ automodule(pkgname, automodule_options) }}
55
+ {% endif %}
@@ -0,0 +1,51 @@
1
+ .. _compare_lam_command:
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+
3
+ Compare-LAM Command
4
+ ===================
5
+
6
+ Compare statistics of two datasets.
7
+ This command compares the statistics of each variable in two datasets **only in the overlapping area** between the two.
8
+
9
+ Example use cases:
10
+ ------------------
11
+ - **Stretched Grid**
12
+ - **Boundary LAM**
13
+
14
+ In both cases, it is necessary to check the alignment between the variables of the local dataset and those of the global dataset.
15
+ Both datasets will coexist on the same grid, and statistical coherence is essential for training stability.
16
+
17
+ The `compare-lam` command outputs a table comparing dataset statistics in **HTML format**.
18
+ Additionally, a plot of the dataset grids can be displayed and saved if requested.
19
+
20
+ Usage:
21
+ ******
22
+ .. code:: console
23
+
24
+ $ anemoi-datasets compare-lam dataset1 dataset2 -D num_dates -O outpath -R round_ndigits --selected-vars var1 var2 ... [--save-plots]
25
+
26
+ Arguments:
27
+ ----------
28
+
29
+ - **dataset1**: Path to the first dataset (the global dataset).
30
+ - **dataset2**: Path to the second dataset (the LAM dataset).
31
+ - **-D, --num-of-dates**: Number of time steps (datapoints) to compare. *(default: 10)*
32
+ - **-O, --outpath**: Path to store the output table (and optional plots). *(default: "./")*
33
+ - **-R, --round-of-digits**: Number of decimal places to round values to. *(default: 4)*
34
+ - **--selected-vars**: List of variables to compare between the datasets. *(default: ["10u", "10v", "2d", "2t"])*
35
+ - **--save-plots (optional)**: Enable this flag to save an image of the dataset grids.
36
+
37
+ Example:
38
+ --------
39
+
40
+ .. code:: console
41
+
42
+ $ compare-lam aifs-ea-an-oper-0001-mars-n320-1979-2022-6h-v6.zarr metno-meps-archive-det-opendap-2p5km-2020-2023-6h-v1.zarr -D 10 -O "./" -R 4 --selected-vars 2t msl --save-plots
43
+
44
+ Argparse integration:
45
+ ---------------------
46
+
47
+ .. argparse::
48
+ :module: anemoi.datasets.__main__
49
+ :func: create_parser
50
+ :prog: anemoi-datasets
51
+ :path: compare-lam
@@ -0,0 +1,24 @@
1
+ .. _grib-index_command:
2
+
3
+ Grib-index Command
4
+ ============
5
+
6
+ The `grib-index` command is used to create an index file for GRIB files. The index file is then used
7
+ by the `grib-index` :ref:`source <grib-index_source>`.
8
+
9
+ The command will recursively scan the directories provided and open all the GRIB files found. It will
10
+ then create an index file for each GRIB file, which will be used to read the data.
11
+
12
+ .. code:: bash
13
+
14
+ anemoi-datasets grib-index --index index.db /path1/to/grib/files /path2/to/grib/files
15
+
16
+
17
+ See :ref:`grib_flavour` for more information about GRIB flavours.
18
+
19
+
20
+ .. argparse::
21
+ :module: anemoi.datasets.__main__
22
+ :func: create_parser
23
+ :prog: anemoi-datasets
24
+ :path: grib-index
@@ -20,3 +20,4 @@ The commands are:
20
20
  - :ref:`Inspect Command <Inspect_command>`
21
21
  - :ref:`Compare Command <compare_command>`
22
22
  - :ref:`Scan Command <scan_command>`
23
+ - :ref:`Compare LAM Command <compare_lam_command>`
@@ -2,7 +2,7 @@
2
2
  orog_to_z
3
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  ###########
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4
 
5
- The ``orog_to_z`` filter converts orography (in meters) to surface
5
+ The ``orog_to_z`` filter converts orography (in metres) to surface
6
6
  geopotential height (m^2/s^2) using the equation:
7
7
 
8
8
  .. math::
@@ -10,7 +10,7 @@ geopotential height (m^2/s^2) using the equation:
10
10
  z &= g \cdot \textrm{orog}\\
11
11
  g &= 9.80665\ m \cdot s^{-1}
12
12
 
13
- This filter needs to follow a source that provides orography, which is
13
+ This filter must follow a source that provides orography, which is
14
14
  replaced by surface geopotential height.
15
15
 
16
16
  .. literalinclude:: yaml/orog_to_z.yaml
@@ -3,23 +3,22 @@
3
3
  ########
4
4
 
5
5
  When building a dataset for a specific model, it is possible that the
6
- source grid or resolution doesn't fit the needs. In that case, it is
6
+ source grid or resolution does not fit the needs. In that case, it is
7
7
  possible to add a filter to interpolate the data to a target grid. The
8
8
  filter is part of the ``anemoi-transform`` package. It will call the
9
9
  ``interpolate`` function from `earthkit-regrid
10
10
  <https://earthkit-regrid.readthedocs.io/en/latest/interpolate.html>`_ if
11
- the keys ``method``, ``in_grid`` and ``out_grid`` are provide and if a
11
+ the keys ``method``, ``in_grid`` and ``out_grid`` are provided and if a
12
12
  `pre-generated matrix
13
13
  <https://earthkit-regrid.readthedocs.io/en/latest/inventory/index.html>`_
14
- exist for this tranformation. Otherwise it is possible to provide a
15
- ``regrid matrix`` previously generate with ``anemoi-transform
16
- make-regrid-matrix``. The generated matrix is a NPZ file containing the
17
- input/output coordinates, the indices and the weights of the
14
+ exists for this transformation. Otherwise, it is possible to provide a
15
+ ``regrid matrix`` previously generated with ``anemoi-transform
16
+ make-regrid-matrix``. The generated matrix is an NPZ file containing the
17
+ input/output coordinates, the indices, and the weights of the
18
18
  interpolation.
19
19
 
20
- ``regrid`` is a :ref:`filter <filters>` that needs to follow a
21
- :ref:`source <sources>` or another filter in a :ref:`building-pipe`
22
- operation.
20
+ ``regrid`` is a :ref:`filter <filters>` that must follow a :ref:`source
21
+ <sources>` or another filter in a :ref:`building-pipe` operation.
23
22
 
24
23
  .. literalinclude:: yaml/regrid1.yaml
25
24
  :language: yaml
@@ -3,10 +3,10 @@
3
3
  ########
4
4
 
5
5
  When combining several sources, it is common to have different values
6
- for a given attribute to represents the same concept. For example,
6
+ for a given attribute to represent the same concept. For example,
7
7
  ``temperature_850hPa`` and ``t_850`` are two different ways to represent
8
- the temperature at 850 hPa. The ``rename`` filter allows to rename a key
9
- to another key. It is a :ref:`filter <filters>` that needs to follow a
8
+ the temperature at 850 hPa. The ``rename`` filter allows renaming a key
9
+ to another key. It is a :ref:`filter <filters>` that must follow a
10
10
  :ref:`source <sources>` or another filter in a :ref:`building-pipe`
11
11
  operation.
12
12
 
@@ -15,6 +15,6 @@ operation.
15
15
 
16
16
  .. note::
17
17
 
18
- The ``rename`` filter was mostly designed to rename the ``param``
18
+ The ``rename`` filter was primarily designed to rename the ``param``
19
19
  attribute, but any key can be renamed. The ``rename`` filter can take
20
20
  several renaming keys.
@@ -0,0 +1,13 @@
1
+ #####
2
+ sum
3
+ #####
4
+
5
+ The ``sum`` filter computes the sum over multiple variables. This can be
6
+ useful for computing total precipitation from its components (snow,
7
+ rain) or summing the components of total column-integrated water. This
8
+ filter must follow a source that provides the list of variables to be
9
+ summed up. These variables are removed by the filter and replaced by a
10
+ single summed variable.
11
+
12
+ .. literalinclude:: yaml/sum.yaml
13
+ :language: yaml
@@ -4,8 +4,8 @@
4
4
 
5
5
  The ``wz_to_w`` filter converts geometric vertical velocity (provided in
6
6
  m/s) to vertical velocity in pressure coordinates (Pa/s). This filter
7
- needs to follow a source that provides geometric vertical velocity.
8
- Geometric vertical velocity is removed by the filter and pressure
7
+ must follow a source that provides geometric vertical velocity.
8
+ Geometric vertical velocity is removed by the filter, and pressure
9
9
  vertical velocity is added.
10
10
 
11
11
  .. literalinclude:: yaml/wz_to_w.yaml
@@ -0,0 +1,11 @@
1
+ input:
2
+ pipe:
3
+ - source:
4
+ # mars, grib, netcdf, etc.
5
+ # source attributes here
6
+ # ...
7
+ # Must load an orography variable
8
+
9
+ - orog_to_z:
10
+ orog: orog # Name of orography (input) variable
11
+ z: z # Name of z (output) variable
@@ -0,0 +1,11 @@
1
+ input:
2
+ pipe:
3
+ - source:
4
+ # mars, grib, netcdf, etc.
5
+ # source attributes here
6
+ # ...
7
+
8
+ - regrid:
9
+ method: nearest
10
+ in_grid: o32
11
+ out_grid: o48
@@ -0,0 +1,9 @@
1
+ input:
2
+ pipe:
3
+ - source:
4
+ # mars, grib, netcdf, etc.
5
+ # source attributes here
6
+ # ...
7
+
8
+ - regrid:
9
+ matrix: /path/to/regrid/matrix.npz
@@ -0,0 +1,13 @@
1
+ input:
2
+ pipe:
3
+ - source:
4
+ # mars, grib, netcdf, etc.
5
+ # source attributes here
6
+ # ...
7
+
8
+ - rename:
9
+ param:
10
+ # Map old `param` names to new ones
11
+ temperature_2m: 2t
12
+ temperature_850hPa: t_850
13
+ # ...
@@ -0,0 +1,15 @@
1
+ input:
2
+ pipe:
3
+ - source:
4
+ # mars, grib, netcdf, etc.
5
+ # source attributes here
6
+ # ...
7
+ # Must load the variables to be summed
8
+
9
+ - sum:
10
+ params:
11
+ # List of input variables
12
+ - variable1
13
+ - variable2
14
+ - variable3
15
+ output: variable_total # Name of output variable
@@ -0,0 +1,11 @@
1
+ input:
2
+ pipe:
3
+ - source:
4
+ # mars, grib, netcdf, etc.
5
+ # source attributes here
6
+ # ...
7
+ # Must load geometric vertical velocity
8
+
9
+ - wz_to_w:
10
+ wz: wz # Name of geometric vertical velocity (input) variable
11
+ x: z # Name of pressure vertical velocity (output) variable
@@ -6,7 +6,7 @@
6
6
 
7
7
  .. warning::
8
8
 
9
- This is still a work in progress. Some of the filters may be renamed
9
+ This is still a work-in-progress. Some of the filters may be renamed
10
10
  later.
11
11
 
12
12
  Filters are used to modify the data or metadata in a dataset.
@@ -6,7 +6,8 @@ By default, the package will raise an error if there are missing dates.
6
6
 
7
7
  Missing dates can be handled by specifying a list of dates in the
8
8
  configuration file. The dates should be in the same format as the dates
9
- in the time series. The missing dates will be filled ``np.nan`` values.
9
+ in the time series. The missing dates will be filled with ``np.nan``
10
+ values.
10
11
 
11
12
  .. literalinclude:: ../yaml/missing_dates.yaml
12
13
  :language: yaml
@@ -9,8 +9,8 @@ complete data in all fields.
9
9
 
10
10
  However, there are scenarios where `NaNs` naturally occur, such as with
11
11
  variables only relevant on land or at sea. This happens for sea surface
12
- temperature (`sst`), for example. In such cases, the default behavior is
13
- to reject data with `NaNs` as invalid. To accommodate `NaNs` and
12
+ temperature (`sst`), for example. In such cases, the default behaviour
13
+ is to reject data with `NaNs` as invalid. To accommodate `NaNs` and
14
14
  accurately compute statistics based on them, you can include the
15
15
  ``allow_nans`` key in the configuration.
16
16
 
@@ -54,7 +54,7 @@ concurrent writes.
54
54
 
55
55
  Once you have loaded all the parts, you can finalise the dataset with
56
56
  the `finalise` command. This will write the metadata and the attributes
57
- to the dataset, and consolidate the statistics and cleanup some
57
+ to the dataset, and consolidate the statistics and clean up some
58
58
  temporary files.
59
59
 
60
60
  .. code:: bash
@@ -11,7 +11,7 @@ fields as well as the operations to perform on them, before they are
11
11
  written to a zarr file. The input of the process is a range of dates and
12
12
  some options to control the layout of the output. Statistics will be
13
13
  computed as the dataset is built, and stored in the metadata, with other
14
- information such as the the locations of the grid points, the list of
14
+ information such as the locations of the grid points, the list of
15
15
  variables, etc.
16
16
 
17
17
  .. figure:: ../../_static/schemas/recipe.png
@@ -27,7 +27,7 @@ date
27
27
  not just a date. A training dataset covers a continuous range of
28
28
  dates with a given frequency. Missing dates are still part of the
29
29
  dataset, but missing data are marked as such using NaNs. Dates are
30
- always in UTC, and refer to date at which the data is valid. For
30
+ always in UTC, and refer to the date at which the data is valid. For
31
31
  accumulations and fluxes, that would be the end of the accumulation
32
32
  period.
33
33
 
@@ -44,9 +44,9 @@ field
44
44
 
45
45
  source
46
46
  The `source` is a software component that, given a list of dates and
47
- variables will return the corresponding fields. An example of source
48
- is ECMWF's MARS archive, a collection of GRIB or NetCDF files, a
49
- database, etc. See :ref:`sources` for more information.
47
+ variables, will return the corresponding fields. An example of a
48
+ source is ECMWF's MARS archive, a collection of GRIB or NetCDF files,
49
+ a database, etc. See :ref:`sources` for more information.
50
50
 
51
51
  filter
52
52
  A `filter` is a software component that takes as input the output of
@@ -69,13 +69,13 @@ join
69
69
  pipe
70
70
  The pipe is the process of transforming fields using filters. The
71
71
  first step of a pipe is typically a source, a join, or another pipe.
72
- This can subsequently followed by more filters.
72
+ This can subsequently be followed by more filters.
73
73
 
74
74
  concat
75
75
  The concatenation is the process of combining different sets of
76
76
  operations that handle different dates. This is typically used to
77
77
  build a dataset that spans several years, when several sources are
78
- involved, each providing data for different period.
78
+ involved, each providing data for a different period.
79
79
 
80
80
  Each operation is considered as a :ref:`source <sources>`, therefore
81
81
  operations can be combined to build complex datasets.
@@ -5,17 +5,17 @@
5
5
  ############################
6
6
 
7
7
  A dataset name is a string used to identify a dataset. It is designed to
8
- be human readable and is *not* designed to be parsed and splitted into
8
+ be human-readable and is *not* designed to be parsed and split into
9
9
  parts.
10
10
 
11
11
  To ensure consistency, a dataset name should follow the following rules:
12
12
 
13
13
  - All lower case.
14
- - Only letters and numbers and dashes ``-`` are allowed.
15
- - No underscore ``_`` and no dot ``.`` and no upper case letter and
16
- no other special character (``@``, ``#``, ``*`` etc.).
14
+ - Only letters, numbers, and dashes ``-`` are allowed.
15
+ - No underscores ``_``, no dots ``.``, no uppercase letters, and no
16
+ other special characters (``@``, ``#``, ``*``, etc.).
17
17
 
18
- Additionlly, a dataset name is built from different parts joined with
18
+ Additionally, a dataset name is built from different parts joined with
19
19
  ``-`` as follows (each part can contain additional ``-``):
20
20
 
21
21
  .. code::
@@ -24,12 +24,12 @@ Additionlly, a dataset name is built from different parts joined with
24
24
 
25
25
  .. note::
26
26
 
27
- This is the current naming conventions for datasets in the Anemoi
27
+ This is the current naming convention for datasets in the Anemoi
28
28
  registry. It will need to be updated and adapted as more datasets are
29
29
  added. The part **purpose** is especially difficult to define for
30
30
  some datasets and may be revisited.
31
31
 
32
- The tables below provides more details and some examples.
32
+ The tables below provide more details and some examples.
33
33
 
34
34
  .. list-table:: Dataset naming conventions
35
35
  :widths: 20 80
@@ -41,7 +41,7 @@ The tables below provides more details and some examples.
41
41
  - - **purpose**
42
42
 
43
43
  - Can be `aifs` because the data is used to train the AIFS model.
44
- Is also sometime `metno` for data from the Norwegian
44
+ It is also sometimes `metno` for data from the Norwegian
45
45
  Meteorological Institute. This definition may need to be
46
46
  revisited.
47
47
 
@@ -69,7 +69,7 @@ The tables below provides more details and some examples.
69
69
  - - **end-year**
70
70
 
71
71
  - 2020 if the first validity time is in 2020. Notice that if the
72
- dataset is from 18.04.2020 to 19.07.2020, the star-year and
72
+ dataset is from 18.04.2020 to 19.07.2020, the start-year and
73
73
  end-year are both 2020. For instance in
74
74
  aifs-od-an-oper-0001-mars-o96-2020-2020-6h-v5
75
75
 
@@ -88,7 +88,7 @@ The tables below provides more details and some examples.
88
88
 
89
89
  - Experimental datasets can have additional text in the name.
90
90
  This extra string can contain additional `-`. It provides
91
- additional information about the content of dataset.
91
+ additional information about the content of the dataset.
92
92
 
93
93
  .. list-table:: Examples
94
94
  :widths: 100
@@ -1,11 +1,11 @@
1
1
  .. _naming-variables:
2
2
 
3
3
  ##################
4
- Naming variables
4
+ Naming Variables
5
5
  ##################
6
6
 
7
7
  ***************
8
- rename filter
8
+ Rename Filter
9
9
  ***************
10
10
 
11
11
  The rename filter is used to rename variables in a dataset.
@@ -13,7 +13,7 @@ The rename filter is used to rename variables in a dataset.
13
13
  .. _remapping_option:
14
14
 
15
15
  ******************
16
- remapping option
16
+ Remapping Option
17
17
  ******************
18
18
 
19
19
  TODO.