ancombcviz 0.0.1__tar.gz

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Files changed (16) hide show
  1. ancombcviz-0.0.1/PKG-INFO +22 -0
  2. ancombcviz-0.0.1/README.md +10 -0
  3. ancombcviz-0.0.1/ancombc_viz/__init__.py +0 -0
  4. ancombcviz-0.0.1/ancombc_viz/main.py +0 -0
  5. ancombcviz-0.0.1/ancombc_viz/plotting.py +0 -0
  6. ancombcviz-0.0.1/ancombc_viz/utils.py +1 -0
  7. ancombcviz-0.0.1/ancombcviz.egg-info/PKG-INFO +22 -0
  8. ancombcviz-0.0.1/ancombcviz.egg-info/SOURCES.txt +14 -0
  9. ancombcviz-0.0.1/ancombcviz.egg-info/dependency_links.txt +1 -0
  10. ancombcviz-0.0.1/ancombcviz.egg-info/entry_points.txt +2 -0
  11. ancombcviz-0.0.1/ancombcviz.egg-info/requires.txt +5 -0
  12. ancombcviz-0.0.1/ancombcviz.egg-info/top_level.txt +4 -0
  13. ancombcviz-0.0.1/pyproject.toml +25 -0
  14. ancombcviz-0.0.1/setup.cfg +4 -0
  15. ancombcviz-0.0.1/setup.py +4 -0
  16. ancombcviz-0.0.1/test/tests.py +1 -0
ancombcviz-0.0.1/PKG-INFO ADDED
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+ Metadata-Version: 2.4
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+ Name: ancombcviz
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+ Version: 0.0.1
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+ Author-email: Wooyeong Park <pss8993@jbnu.ac.kr>
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+ Requires-Python: >=3.12
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+ Description-Content-Type: text/markdown
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+ Requires-Dist: numpy>=2.0
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+ Requires-Dist: pandas
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+ Requires-Dist: matplotlib
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+ Requires-Dist: seaborn
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+ Requires-Dist: scikit-bio>=0.7.1
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+
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+ ## ANCOMBCviz
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+ ANCOMBCviz is a Python package for analyzing differential abundance of group by microbiome composition and visualizing the resulting ANCOM-BC as a plot.
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+
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+ ## Method
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+ In ANCOM-BC, program of analysis to diffrential abundance. This tool use compositional microbiome relative abundance data analysis. and This method also use LefSe2, ALDEx2 usually.
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+ In ANCOMBCviz, this ANCOM-BC results file make image file. plot type is `barplot`, `heatmap`.
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+ This package also need `numpy >= 2.0`, `pandas`, `matplotlib >= 0.7.1`, `seaborn`, `skbio.stats.composition.ancom`.
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+
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+
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+
ancombcviz-0.0.1/README.md ADDED
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+ ## ANCOMBCviz
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+ ANCOMBCviz is a Python package for analyzing differential abundance of group by microbiome composition and visualizing the resulting ANCOM-BC as a plot.
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+
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+ ## Method
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+ In ANCOM-BC, program of analysis to diffrential abundance. This tool use compositional microbiome relative abundance data analysis. and This method also use LefSe2, ALDEx2 usually.
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+ In ANCOMBCviz, this ANCOM-BC results file make image file. plot type is `barplot`, `heatmap`.
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+ This package also need `numpy >= 2.0`, `pandas`, `matplotlib >= 0.7.1`, `seaborn`, `skbio.stats.composition.ancom`.
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+
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+
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+
ancombcviz-0.0.1/ancombc_viz/__init__.py ADDED
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ancombcviz-0.0.1/ancombc_viz/main.py ADDED
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ancombcviz-0.0.1/ancombc_viz/plotting.py ADDED
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ancombcviz-0.0.1/ancombc_viz/utils.py ADDED
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+ ## Plotting python package
ancombcviz-0.0.1/ancombcviz.egg-info/PKG-INFO ADDED
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+ Metadata-Version: 2.4
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+ Name: ancombcviz
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+ Version: 0.0.1
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+ Author-email: Wooyeong Park <pss8993@jbnu.ac.kr>
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+ Requires-Python: >=3.12
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+ Description-Content-Type: text/markdown
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+ Requires-Dist: numpy>=2.0
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+ Requires-Dist: pandas
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+ Requires-Dist: matplotlib
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+ Requires-Dist: seaborn
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+ Requires-Dist: scikit-bio>=0.7.1
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+
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+ ## ANCOMBCviz
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+ ANCOMBCviz is a Python package for analyzing differential abundance of group by microbiome composition and visualizing the resulting ANCOM-BC as a plot.
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+
16
+ ## Method
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+ In ANCOM-BC, program of analysis to diffrential abundance. This tool use compositional microbiome relative abundance data analysis. and This method also use LefSe2, ALDEx2 usually.
18
+ In ANCOMBCviz, this ANCOM-BC results file make image file. plot type is `barplot`, `heatmap`.
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+ This package also need `numpy >= 2.0`, `pandas`, `matplotlib >= 0.7.1`, `seaborn`, `skbio.stats.composition.ancom`.
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+
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+
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+
ancombcviz-0.0.1/ancombcviz.egg-info/SOURCES.txt ADDED
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+ README.md
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+ pyproject.toml
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+ setup.py
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+ ancombc_viz/__init__.py
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+ ancombc_viz/main.py
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+ ancombc_viz/plotting.py
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+ ancombc_viz/utils.py
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+ ancombcviz.egg-info/PKG-INFO
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+ ancombcviz.egg-info/SOURCES.txt
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+ ancombcviz.egg-info/dependency_links.txt
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+ ancombcviz.egg-info/entry_points.txt
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+ ancombcviz.egg-info/requires.txt
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+ ancombcviz.egg-info/top_level.txt
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+ test/tests.py
ancombcviz-0.0.1/ancombcviz.egg-info/entry_points.txt ADDED
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+ [console_scripts]
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+ ancombcviz = ancombc_viz.main:main
ancombcviz-0.0.1/ancombcviz.egg-info/requires.txt ADDED
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+ numpy>=2.0
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+ pandas
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+ matplotlib
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+ seaborn
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+ scikit-bio>=0.7.1
ancombcviz-0.0.1/ancombcviz.egg-info/top_level.txt ADDED
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+ ancombc_viz
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+ dist
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+ examples
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+ test
ancombcviz-0.0.1/pyproject.toml ADDED
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+ [build-system]
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+ requires = ["setuptools"]
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+ build-backend = "setuptools.build_meta"
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+
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+ [project]
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+ name = "ancombcviz"
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+ version = "0.0.1"
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+ authors = [
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+ {name = "Wooyeong Park", email = "pss8993@jbnu.ac.kr"},
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+ ]
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+ readme = "README.md"
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+ requires-python = ">=3.12"
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+ dependencies = [
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+ "numpy>=2.0",
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+ "pandas",
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+ "matplotlib",
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+ "seaborn",
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+ "scikit-bio>=0.7.1",
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+ ]
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+
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+ [project.scripts]
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+ ancombcviz = "ancombc_viz.main:main"
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+
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+ [tool.setuptools.packages.find]
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+ where = ["."]
ancombcviz-0.0.1/setup.cfg ADDED
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+ [egg_info]
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+ tag_build =
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+ tag_date = 0
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+
ancombcviz-0.0.1/setup.py ADDED
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+ from setuptools import setup, find_packages
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+
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+ setup()
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+
ancombcviz-0.0.1/test/tests.py ADDED
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+ ## Test python file