amina-cli 0.2.3__tar.gz → 0.2.4__tar.gz

{amina_cli-0.2.3 → amina_cli-0.2.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: amina-cli
-Version: 0.2.3
+Version: 0.2.4
 Summary: CLI for AminoAnalytica protein engineering platform
 Project-URL: Homepage, https://aminoanalytica.com
 Project-URL: Documentation, https://docs.aminoanalytica.com

{amina_cli-0.2.3 → amina_cli-0.2.4}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "amina-cli"
-version = "0.2.3"
+version = "0.2.4"
 description = "CLI for AminoAnalytica protein engineering platform"
 readme = "README.md"
 license = {text = "Apache-2.0"}

{amina_cli-0.2.3 → amina_cli-0.2.4}/src/amina_cli/__init__.py

@@ -9,4 +9,4 @@ Quick start:
     amina run esmfold --sequence "MKFLILLFNILCLFPVLAADNH"
 """
 
-__version__ = "0.2.3"
+__version__ = "0.2.4"

amina_cli-0.2.4/src/amina_cli/commands/__init__.py

@@ -0,0 +1,9 @@
+"""
+CLI command modules.
+
+Each module defines a Typer sub-application for a command group.
+"""
+
+from amina_cli.commands import auth_cmd, jobs_cmd, run_cmd, tools_cmd
+
+__all__ = ["auth_cmd", "jobs_cmd", "run_cmd", "tools_cmd"]

{amina_cli-0.2.3 → amina_cli-0.2.4}/src/amina_cli/main.py

@@ -9,7 +9,7 @@ import typer
 from rich.console import Console
 
 from amina_cli import __version__
-from amina_cli.commands import auth_cmd, init_cmd, jobs_cmd, run_cmd, tools_cmd
+from amina_cli.commands import auth_cmd, jobs_cmd, run_cmd, tools_cmd
 
 # Create the main application
 app = typer.Typer(
@@ -26,10 +26,10 @@ app = typer.Typer(
 
 [bold]Get an API key:[/bold] https://aminoanalytica.com
 
-[bold]Claude Code integration:[/bold]
-    amina init claude-skills           # Install skills to .claude/skills/
+[bold]AI agent integration:[/bold]
+    npx skills add AminoAnalytica/amina-skills --all
 
-    Then run [bold]/amina-init[/bold] in Claude Code to get started.""",
+    Then run [bold]/amina-init[/bold] in your AI agent to get started.""",
     no_args_is_help=True,
     rich_markup_mode="rich",
 )
@@ -39,7 +39,6 @@ console = Console()
 
 # Register subcommands
 app.add_typer(auth_cmd.app, name="auth", help="Manage API key authentication")
-app.add_typer(init_cmd.app, name="init", help="Initialize project resources")
 app.add_typer(jobs_cmd.app, name="jobs", help="Manage background jobs")
 app.add_typer(run_cmd.app, name="run", help="Run computational biology tools")
 app.add_typer(tools_cmd.app, name="tools", help="List tools and view their parameters")
@@ -67,7 +66,7 @@ def main(
 
     Run computational biology tools from the command line with your AminoAnalytica API key.
 
-    Claude Code: Run 'amina init claude-skills' then '/amina-init' to get started.
+    AI agents: Run 'npx skills add AminoAnalytica/amina-skills --all' then '/amina-init' to get started.
     """
     if version:
         console.print(f"amina-cli version {__version__}")

amina_cli-0.2.3/src/amina_cli/commands/__init__.py

@@ -1,9 +0,0 @@
-"""
-CLI command modules.
-
-Each module defines a Typer sub-application for a command group.
-"""
-
-from amina_cli.commands import auth_cmd, init_cmd, jobs_cmd, run_cmd, tools_cmd
-
-__all__ = ["auth_cmd", "init_cmd", "jobs_cmd", "run_cmd", "tools_cmd"]

amina_cli-0.2.3/src/amina_cli/commands/init_cmd.py

@@ -1,96 +0,0 @@
-"""Initialize Claude Code skills for Amina."""
-
-import io
-import zipfile
-from pathlib import Path
-
-import httpx
-import typer
-from rich.console import Console
-from rich.panel import Panel
-
-app = typer.Typer(no_args_is_help=True)
-console = Console()
-
-SKILLS_REPO = "AminoAnalytica/amina-skills"
-SKILLS_BRANCH = "main"
-GITHUB_ZIPBALL_URL = f"https://github.com/{SKILLS_REPO}/archive/refs/heads/{SKILLS_BRANCH}.zip"
-
-
-@app.command("claude-skills")
-def init_claude_skills():
-    """Download and install Claude Code skills for Amina.
-
-    Installs skills to .claude/skills/ in the current directory,
-    enabling Claude Code to assist with protein engineering tasks.
-
-    Always updates to the latest skills from the repository.
-    """
-    skills_dir = Path.cwd() / ".claude" / "skills"
-
-    console.print("[bold]Downloading Amina skills for Claude Code...[/bold]\n")
-
-    try:
-        # Download zipball from GitHub
-        with console.status("[dim]Fetching from GitHub...[/dim]"):
-            response = httpx.get(GITHUB_ZIPBALL_URL, follow_redirects=True, timeout=60)
-            response.raise_for_status()
-
-        # Extract skills
-        with console.status("[dim]Extracting skills...[/dim]"):
-            skills_dir.mkdir(parents=True, exist_ok=True)
-
-            with zipfile.ZipFile(io.BytesIO(response.content)) as zf:
-                # Find the claude-skills/ directory in the archive
-                # Archive structure: amina-skills-main/claude-skills/...
-                prefix = None
-                for name in zf.namelist():
-                    if "/claude-skills/" in name:
-                        prefix = name.split("/claude-skills/")[0] + "/claude-skills/"
-                        break
-
-                if not prefix:
-                    console.print("[red]Error: Could not find skills in archive[/red]")
-                    raise typer.Exit(1)
-
-                # Extract each skill
-                skill_names = set()
-                for name in zf.namelist():
-                    if name.startswith(prefix) and name != prefix:
-                        # Get relative path within skills/
-                        rel_path = name[len(prefix) :]
-                        if rel_path:
-                            skill_name = rel_path.split("/")[0]
-                            skill_names.add(skill_name)
-
-                            # Extract file
-                            target_path = skills_dir / rel_path
-                            if name.endswith("/"):
-                                target_path.mkdir(parents=True, exist_ok=True)
-                            else:
-                                target_path.parent.mkdir(parents=True, exist_ok=True)
-                                target_path.write_bytes(zf.read(name))
-
-        # Print success
-        console.print("[green]Installed skills:[/green]")
-        for skill in sorted(skill_names):
-            if skill:  # Skip empty strings
-                console.print(f"  [dim]•[/dim] {skill}")
-
-        console.print(
-            Panel(
-                "Run [bold]claude[/bold] from this directory to use Amina skills.",
-                title="Done",
-                border_style="green",
-            )
-        )
-
-    except httpx.HTTPError as e:
-        console.print(
-            Panel(
-                f"[red]Failed to download skills:[/red] {e}\n\nCheck your internet connection and try again.",
-                title="Error",
-                border_style="red",
-            )
-        )
-        raise typer.Exit(1)