amaazetools 0.2.4__tar.gz → 0.2.6__tar.gz

{amaazetools-0.2.4/amaazetools.egg-info → amaazetools-0.2.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: amaazetools
-Version: 0.2.4
+Version: 0.2.6
 Summary: Python package for mesh processing tools developed by AMAAZE
 Author-email: Jeff Calder <jwcalder@umn.edu>
 License: MIT

{amaazetools-0.2.4 → amaazetools-0.2.6}/amaazetools/dicom.py

@@ -1,5 +1,6 @@
 #Utilities for processing dicom volumes
 import pandas as pd, numpy as np
+import datetime
 import matplotlib.pyplot as plt
 import pydicom as dicom
 import scipy.ndimage as ndimage
@@ -370,6 +371,7 @@ def surface_bones(directory, iso=2500, write_gif=False, mirror=False):
             J = rescale(I.astype(float),(dz/dx,1,1),mode='constant')
 
             if mirror:
+                print("Correcting for mirroring...")
                 J = J[::-1,:,:]
 
             #Marching cubes for isosurface
@@ -381,7 +383,11 @@ def surface_bones(directory, iso=2500, write_gif=False, mirror=False):
             mesh.flip_normals()
 
             #Write to ply file
-            mesh_filename = os.path.join(directory,filename[:-4]+'_iso%d'%iso_level)
+            #mesh_filename = os.path.join(directory,filename[:-4]+'_iso%d'%iso_level)
+            date_time = datetime.now().strftime("%Y%m%d_%H%M")
+            basename = os.path.splitext(filename)[0] # If we are ever concerned about varying filing extension lengths
+            mesh_filename = os.path.join(directory, basename + '_iso%d' % iso_level + '_original_' + date_time)
+
             print('Saving mesh to '+mesh_filename+'...')
             mesh.to_ply(mesh_filename+'.ply')
 
@@ -886,6 +892,7 @@ def surfacing_subproc(filename,directory,iso_level,write_gif=False,mirror=False)
     J = rescale(I.astype(float),(dz/dx,1,1),mode='constant')
 
     if mirror:
+        print("Correcting for mirroring...")
         J = J[::-1,:,:]
     
     try: 
@@ -896,7 +903,10 @@ def surfacing_subproc(filename,directory,iso_level,write_gif=False,mirror=False)
         mesh.flip_normals()
     
         #Write to ply file
-        mesh_filename = os.path.join(directory,filename[:-4]+'_iso%d'%iso_level)
+        #mesh_filename = os.path.join(directory,filename[:-4]+'_iso%d'%iso_level) #This is the old one
+        date_time = datetime.now().strftime("%Y%m%d_%H%M")
+        basename = os.path.splitext(filename)[0] # If we are ever concerned about varying filing extension lengths
+        mesh_filename = os.path.join(directory, basename + '_iso%d' % iso_level + '_original_' + date_time)
         print('Saving mesh to '+mesh_filename+'...')
         mesh.to_ply(mesh_filename+'.ply')
     

{amaazetools-0.2.4 → amaazetools-0.2.6/amaazetools.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: amaazetools
-Version: 0.2.4
+Version: 0.2.6
 Summary: Python package for mesh processing tools developed by AMAAZE
 Author-email: Jeff Calder <jwcalder@umn.edu>
 License: MIT

{amaazetools-0.2.4 → amaazetools-0.2.6}/pyproject.toml

@@ -9,7 +9,7 @@ packages = ['amaazetools']
 
 [project]
 name = "amaazetools"
-version = "0.2.4"
+version = "0.2.6"
 authors = [
   { name="Jeff Calder", email="jwcalder@umn.edu" },
 ]