aldepyde 0.0.0a35__tar.gz → 0.0.0a37__tar.gz

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  1. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/PKG-INFO +1 -1
  2. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/SCOPe_Astral.py +4 -2
  3. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde.egg-info/PKG-INFO +1 -1
  4. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/pyproject.toml +1 -1
  5. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/LICENSE +0 -0
  6. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/README.md +0 -0
  7. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/Parsers/_mmcif_parser.py +0 -0
  8. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/Parsers/_pdb_parser.py +0 -0
  9. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/__init__.py +0 -0
  10. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/_config.py +0 -0
  11. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/Residue.py +0 -0
  12. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/_Atom.py +0 -0
  13. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/_AtomFactory.py +0 -0
  14. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/__init__.py +0 -0
  15. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/_amino_acid.py +0 -0
  16. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/_dna.py +0 -0
  17. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/_pdb.py +0 -0
  18. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/_rna.py +0 -0
  19. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/biomolecule/utils.py +0 -0
  20. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/cache/__init__.py +0 -0
  21. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/cache/_cache.py +0 -0
  22. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/cache/cachemanager.py +0 -0
  23. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/cache/downloader.py +0 -0
  24. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/cache/utils.py +0 -0
  25. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/configurable.py +0 -0
  26. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/data/RemoteFileHandler.py +0 -0
  27. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/data/__init__.py +0 -0
  28. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/data.py +0 -0
  29. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/PDB.py +0 -0
  30. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/RemoteFileHandler.py +0 -0
  31. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/UniRef.py +0 -0
  32. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/__init__.py +0 -0
  33. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/_database.py +0 -0
  34. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/env.py +0 -0
  35. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/fetcher/__init__.py +0 -0
  36. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/fetcher/test.py +0 -0
  37. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/json/CHG.json +0 -0
  38. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/json/Swiss_Prot.json +0 -0
  39. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/json/chemistry.json +0 -0
  40. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/rand/RandomProtein.py +0 -0
  41. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/rand/__init__.py +0 -0
  42. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/stats/ProteinStats.py +0 -0
  43. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/stats/__init__.py +0 -0
  44. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/utils.py +0 -0
  45. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde.egg-info/SOURCES.txt +0 -0
  46. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde.egg-info/dependency_links.txt +0 -0
  47. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde.egg-info/top_level.txt +0 -0
  48. {aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/setup.cfg +0 -0
{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: aldepyde
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- Version: 0.0.0a35
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+ Version: 0.0.0a37
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  Summary: A package of chemistry and biochemical tools
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  Author-email: Nate McMurray <nate.mcmurray13@gmail.com>
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  License: MIT License
{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/databases/SCOPe_Astral.py RENAMED
@@ -1,3 +1,5 @@
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+ import io
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+
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  from aldepyde.databases._database import local_database
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  import operator
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  from contextlib import nullcontext
@@ -49,9 +51,9 @@ class scop_parser(local_database):
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  logic = scop_parser.op[mode]
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  regex = re.compile(b">[a-zA-Z0-9_.]* *[a-l](.[0-9]+)?(.[0-9]+)?(.[0-9]+)?")
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  if append:
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- file_context = open(destination, 'ab') if destination is not None else nullcontext()
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+ file_context = open(destination, 'ab') if destination is not None else nullcontext(io.BytesIO())
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  else:
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- file_context = open(destination, 'wb') if destination is not None else nullcontext()
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+ file_context = open(destination, 'wb') if destination is not None else nullcontext(io.BytesIO())
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  with file_context as fp:
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  ret_dict = dict()
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  for line in self.extract_all_astral():
{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: aldepyde
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- Version: 0.0.0a35
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+ Version: 0.0.0a37
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  Summary: A package of chemistry and biochemical tools
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  Author-email: Nate McMurray <nate.mcmurray13@gmail.com>
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  License: MIT License
{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  "aldepyde" = ["json/*.json"]
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  [project]
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  name = "aldepyde"
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- version = "0.0.0a35"
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+ version = "0.0.0a37"
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  authors = [
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  { name="Nate McMurray", email="nate.mcmurray13@gmail.com" },
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  ]
{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/LICENSE RENAMED
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{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/README.md RENAMED
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{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/aldepyde/env.py RENAMED
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{aldepyde-0.0.0a35 → aldepyde-0.0.0a37}/setup.cfg RENAMED
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