aind-data-schema-models 2.4.2__tar.gz → 2.4.4__tar.gz

{aind_data_schema_models-2.4.2/src/aind_data_schema_models.egg-info → aind_data_schema_models-2.4.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aind-data-schema-models
-Version: 2.4.2
+Version: 2.4.4
 Summary: Generated from aind-library-template
 Author: Allen Institute for Neural Dynamics
 License: MIT

aind_data_schema_models-2.4.4/src/aind_data_schema_models/__init__.py

@@ -0,0 +1,3 @@
+"""Init package"""
+
+__version__ = "2.4.4"

aind_data_schema_models-2.4.4/src/aind_data_schema_models/_generators/models/atlas.csv

@@ -0,0 +1,3 @@
+name
+CCF
+CUSTOM

aind_data_schema_models-2.4.4/src/aind_data_schema_models/_generators/templates/atlas.txt

@@ -0,0 +1,11 @@
+"""Process names"""
+{% raw -%}
+from enum import Enum
+{% endraw %}
+
+class AtlasName(str, Enum):
+    """Atlas names"""
+{% for _, row in data.iterrows() %}
+    {{ row['name'] | to_class_name | upper }} = "{{ row['name'] }}"
+{%- endfor %}
+

{aind_data_schema_models-2.4.2 → aind_data_schema_models-2.4.4}/src/aind_data_schema_models/_generators/templates/mouse_anatomy.txt

@@ -177,5 +177,5 @@ class MouseBloodVessels(metaclass=MouseAnatomyMeta):
 class InjectionTargets(metaclass=MouseAnatomyMeta):
     """ Common injection targets """
 
-    VENOUS_SINUS = "venous sinus"
-    PERITONEAL_CAVITY = "peritoneal cavity"
+    RETRO_ORBITAL = "venous sinus"
+    INTRAPERITONEAL = "peritoneal cavity"

aind_data_schema_models-2.4.4/src/aind_data_schema_models/atlas.py

@@ -0,0 +1,10 @@
+"""Process names"""
+
+from enum import Enum
+
+
+class AtlasName(str, Enum):
+    """Atlas names"""
+
+    CCF = "CCF"
+    CUSTOM = "CUSTOM"

{aind_data_schema_models-2.4.2 → aind_data_schema_models-2.4.4}/src/aind_data_schema_models/mouse_anatomy.py

@@ -8403,5 +8403,5 @@ class MouseBloodVessels(metaclass=MouseAnatomyMeta):
 class InjectionTargets(metaclass=MouseAnatomyMeta):
     """Common injection targets"""
 
-    VENOUS_SINUS = "venous sinus"
-    PERITONEAL_CAVITY = "peritoneal cavity"
+    RETRO_ORBITAL = "venous sinus"
+    INTRAPERITONEAL = "peritoneal cavity"

{aind_data_schema_models-2.4.2 → aind_data_schema_models-2.4.4/src/aind_data_schema_models.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aind-data-schema-models
-Version: 2.4.2
+Version: 2.4.4
 Summary: Generated from aind-library-template
 Author: Allen Institute for Neural Dynamics
 License: MIT

{aind_data_schema_models-2.4.2 → aind_data_schema_models-2.4.4}/src/aind_data_schema_models.egg-info/SOURCES.txt

@@ -22,6 +22,7 @@ doc_template/source/_static/light-logo.svg
 scripts/__init__.py
 scripts/write_to_docdb.py
 src/aind_data_schema_models/__init__.py
+src/aind_data_schema_models/atlas.py
 src/aind_data_schema_models/brain_atlas.py
 src/aind_data_schema_models/data_name_patterns.py
 src/aind_data_schema_models/harp_types.py
@@ -44,6 +45,7 @@ src/aind_data_schema_models.egg-info/top_level.txt
 src/aind_data_schema_models/_generators/__init__.py
 src/aind_data_schema_models/_generators/dev_utils.py
 src/aind_data_schema_models/_generators/generator.py
+src/aind_data_schema_models/_generators/models/atlas.csv
 src/aind_data_schema_models/_generators/models/brain_atlas.csv
 src/aind_data_schema_models/_generators/models/harp_types.csv
 src/aind_data_schema_models/_generators/models/modalities.csv
@@ -53,6 +55,7 @@ src/aind_data_schema_models/_generators/models/process_names.csv
 src/aind_data_schema_models/_generators/models/registries.csv
 src/aind_data_schema_models/_generators/models/species.csv
 src/aind_data_schema_models/_generators/models/specimen_procedure_types.csv
+src/aind_data_schema_models/_generators/templates/atlas.txt
 src/aind_data_schema_models/_generators/templates/brain_atlas.txt
 src/aind_data_schema_models/_generators/templates/harp_types.txt
 src/aind_data_schema_models/_generators/templates/modalities.txt
@@ -63,6 +66,7 @@ src/aind_data_schema_models/_generators/templates/registries.txt
 src/aind_data_schema_models/_generators/templates/species.txt
 src/aind_data_schema_models/_generators/templates/specimen_procedure_types.txt
 tests/__init__.py
+tests/test_atlas.py
 tests/test_data_name_patterns.py
 tests/test_dev_utils.py
 tests/test_generator.py

aind_data_schema_models-2.4.4/tests/test_atlas.py

@@ -0,0 +1,18 @@
+"""Tests classes in atlas module"""
+
+import unittest
+
+from aind_data_schema_models.atlas import AtlasName
+
+
+class TestAtlasName(unittest.TestCase):
+    """Tests methods in AtlasName class"""
+
+    def test_class_construction(self):
+        """Tests enum can be instantiated via string"""
+
+        self.assertEqual(AtlasName.CCF, AtlasName("CCF"))
+
+
+if __name__ == "__main__":
+    unittest.main()

aind_data_schema_models-2.4.2/src/aind_data_schema_models/__init__.py

@@ -1,3 +0,0 @@
-"""Init package"""
-
-__version__ = "2.4.2"