aimedicalcoding 0.3.8__tar.gz → 0.3.9__tar.gz

{aimedicalcoding-0.3.8/aimedicalcoding.egg-info → aimedicalcoding-0.3.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aimedicalcoding
-Version: 0.3.8
+Version: 0.3.9
 Summary: Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / ICD-10-CM / CVX) in CCDA and FHIR documents, with recovery evidence
 Author: Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan
 License: MIT

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9}/aimedicalcoding/systems/cvx/patterns.py

@@ -73,13 +73,14 @@ def classify(stmt: ClinicalStatement) -> Optional[CvxGapPattern]:
     if cc and cc.code and cc.system not in STRUCTURAL:
         return CvxGapPattern.LOCAL_CODE_ONLY
 
+    # no usable code + no vaccine name -> nothing to recover -> not a gap
+    if not stmt.raw_text:
+        return None
     if _has_nullflavor(stmt):
         return CvxGapPattern.NULLFLAVOR
-    if stmt.raw_text:
-        if "/text" in (stmt.source_ref or ""):
-            return CvxGapPattern.NARRATIVE_ONLY
-        return CvxGapPattern.DISPLAY_ONLY
-    return None
+    if "/text" in (stmt.source_ref or ""):
+        return CvxGapPattern.NARRATIVE_ONLY
+    return CvxGapPattern.DISPLAY_ONLY
 
 
 # --------------------------------------------------------------------------

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9}/aimedicalcoding/systems/icd10cm/patterns.py

@@ -67,13 +67,16 @@ def classify(stmt: ClinicalStatement) -> Optional[Icd10cmGapPattern]:
     if other:                                   # ICD-9 / local / anything else
         return Icd10cmGapPattern.LOCAL_CODE_ONLY
 
+    # diagnosis is value-slot: require a value-slot label to recover from.
+    # No code AND no value label (e.g. dataAbsentReason, no text) -> not a gap.
+    val_label = stmt.value and (stmt.value.original_text or stmt.value.raw)
+    if not val_label:
+        return None
     if _has_nullflavor(stmt):
         return Icd10cmGapPattern.NULLFLAVOR
-    if stmt.raw_text or (stmt.value and (stmt.value.original_text or stmt.value.raw)):
-        if "/text" in (stmt.source_ref or ""):
-            return Icd10cmGapPattern.NARRATIVE_ONLY
-        return Icd10cmGapPattern.DISPLAY_ONLY
-    return None
+    if "/text" in (stmt.source_ref or ""):
+        return Icd10cmGapPattern.NARRATIVE_ONLY
+    return Icd10cmGapPattern.DISPLAY_ONLY
 
 
 # --------------------------------------------------------------------------

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9}/aimedicalcoding/systems/loinc/patterns.py

@@ -77,6 +77,11 @@ def classify(stmt: ClinicalStatement) -> Optional[GapPattern]:
     if clinical_codes:
         return GapPattern.LOCAL_CODE_ONLY
 
+    # No usable code: a gap is only actionable if a concept label exists to
+    # search with. No code AND no label (e.g. dataAbsentReason with no text)
+    # -> nothing to fill -> not a gap.
+    if not stmt.raw_text:
+        return None
     has_nullflavor = any(c.system == System.NULLFLAVOR for c in stmt.codings)
     if has_nullflavor:
         return GapPattern.NULLFLAVOR

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9}/aimedicalcoding/systems/rxnorm/patterns.py

@@ -68,13 +68,14 @@ def classify(stmt: ClinicalStatement) -> Optional[RxnormGapPattern]:
     if cc and cc.code and cc.system not in STRUCTURAL:
         return RxnormGapPattern.LOCAL_CODE_ONLY   # local/formulary/other
 
+    # no usable code + no drug name -> nothing to recover -> not a gap
+    if not stmt.raw_text:
+        return None
     if _has_nullflavor(stmt):
         return RxnormGapPattern.NULLFLAVOR
-    if stmt.raw_text:
-        if "/text" in (stmt.source_ref or ""):
-            return RxnormGapPattern.NARRATIVE_ONLY
-        return RxnormGapPattern.DISPLAY_ONLY
-    return None
+    if "/text" in (stmt.source_ref or ""):
+        return RxnormGapPattern.NARRATIVE_ONLY
+    return RxnormGapPattern.DISPLAY_ONLY
 
 
 # --------------------------------------------------------------------------

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9}/aimedicalcoding/systems/snomed/patterns.py

@@ -113,16 +113,17 @@ def classify(stmt: ClinicalStatement) -> Optional[SnomedGapPattern]:
     if cc and cc.code and cc.system not in STRUCTURAL:
         return SnomedGapPattern.LOCAL_CODE_ONLY   # CPT / local / other
 
-    # no usable concept code. The label must come from the CONCEPT's slot
-    # (value display/originalText for value-slot contexts) — raw_text alone
-    # misses e.g. reaction observations whose code tag is a bare ASSERTION.
+    # no usable concept code. A gap is only actionable if a recoverable label
+    # exists for the concept's slot (value display/originalText for value-slot
+    # contexts). If there is neither a code NOR a label (e.g. dataAbsentReason
+    # with no value text/note), there is nothing to fill -> not a gap.
+    if not concept_term(stmt):
+        return None
     if _has_nullflavor(stmt):
         return SnomedGapPattern.NULLFLAVOR
-    if concept_term(stmt):
-        if "/text" in (stmt.source_ref or ""):
-            return SnomedGapPattern.NARRATIVE_ONLY
-        return SnomedGapPattern.DISPLAY_ONLY
-    return None
+    if "/text" in (stmt.source_ref or ""):
+        return SnomedGapPattern.NARRATIVE_ONLY
+    return SnomedGapPattern.DISPLAY_ONLY
 
 
 # --------------------------------------------------------------------------

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9/aimedicalcoding.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aimedicalcoding
-Version: 0.3.8
+Version: 0.3.9
 Summary: Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / ICD-10-CM / CVX) in CCDA and FHIR documents, with recovery evidence
 Author: Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan
 License: MIT

{aimedicalcoding-0.3.8 → aimedicalcoding-0.3.9}/setup.py

@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
 
 setup(
     name="aimedicalcoding",
-    version="0.3.8",
+    version="0.3.9",
     author="Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan",
     description=(
         "Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / "