aimedicalcoding 0.3.6__tar.gz → 0.3.7__tar.gz

{aimedicalcoding-0.3.6/aimedicalcoding.egg-info → aimedicalcoding-0.3.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aimedicalcoding
-Version: 0.3.6
+Version: 0.3.7
 Summary: Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / ICD-10-CM / CVX) in CCDA and FHIR documents, with recovery evidence
 Author: Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan
 License: MIT

{aimedicalcoding-0.3.6 → aimedicalcoding-0.3.7}/aimedicalcoding/adapters/fhir/codes.py

@@ -169,7 +169,9 @@ def extract_value(resource: dict) -> Optional[ValueInfo]:
 # --------------------------------------------------------------------------
 
 def extract_companion(resource: dict) -> dict:
-    """interpretation + reference range (Observation-shaped resources)."""
+    """interpretation + reference range + method + body site (Observation-shaped
+    resources). FHIR analog of the CCDA extractor: Observation.method and
+    Observation.bodySite are CodeableConcepts (the LOINC Method axis / site)."""
     out: dict[str, Any] = {}
     for interp in resource.get("interpretation") or []:
         code = next((clean(c.get("code")) for c in interp.get("coding") or []
@@ -189,6 +191,22 @@ def extract_companion(resource: dict) -> dict:
         if clean(rr.get("text")):
             out["reference_range"] = clean(rr.get("text"))
             break
+
+    # method: LOINC Method axis (Observation.method CodeableConcept)
+    m_codings, m_text = concept_codings(resource.get("method"))
+    method = best_label(m_codings, m_text)
+    if method:
+        out["method"] = method
+
+    # body site: Observation.bodySite CodeableConcept
+    b_codings, b_text = concept_codings(resource.get("bodySite"))
+    body_site = best_label(b_codings, b_text)
+    if body_site:
+        out["body_site"] = body_site
+        primary = next((c for c in b_codings if c.code), None)
+        if primary:
+            out["body_site_code"] = primary.code
+    return out
     return out
 
 

{aimedicalcoding-0.3.6 → aimedicalcoding-0.3.7/aimedicalcoding.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aimedicalcoding
-Version: 0.3.6
+Version: 0.3.7
 Summary: Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / ICD-10-CM / CVX) in CCDA and FHIR documents, with recovery evidence
 Author: Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan
 License: MIT

{aimedicalcoding-0.3.6 → aimedicalcoding-0.3.7}/setup.py

@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
 
 setup(
     name="aimedicalcoding",
-    version="0.3.6",
+    version="0.3.7",
     author="Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan",
     description=(
         "Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / "