aimedicalcoding 0.3.4__tar.gz → 0.3.5__tar.gz

{aimedicalcoding-0.3.4/aimedicalcoding.egg-info → aimedicalcoding-0.3.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aimedicalcoding
-Version: 0.3.4
+Version: 0.3.5
 Summary: Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / ICD-10-CM / CVX) in CCDA and FHIR documents, with recovery evidence
 Author: Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan
 License: MIT

{aimedicalcoding-0.3.4 → aimedicalcoding-0.3.5}/aimedicalcoding/serialize.py

@@ -121,20 +121,6 @@ def _dedupe(items) -> list:
     return out
 
 
-# SNOMED search-term enrichment (Problems 11450-4, Allergies 48765-2, Social
-# History 29762-2), matched by section LOINC or by the contexts those sections
-# route to (FHIR resources often carry no meta.tag/section code). Which slot's
-# labels get appended differs by section:
-#   - Social History  -> CODE tag labels (the question, e.g. "Gender identity" —
-#     the value label is often a placeholder like "Not on file")
-#   - Problems / Allergies -> VALUE tag labels (the concept; the code tag is a
-#     generic marker like ASSERTION / "Problem" — appending it is noise)
-_SNOMED_CODE_LABEL_SECTIONS = {"29762-2"}
-_SNOMED_CODE_LABEL_CONTEXTS = {"social_history"}
-_SNOMED_VALUE_LABEL_SECTIONS = {"11450-4", "48765-2"}
-_SNOMED_VALUE_LABEL_CONTEXTS = {"problem", "allergy_substance", "allergy_reaction"}
-
-
 def _recovery(record: NormalizedRecord, slot: str, system: str) -> dict:
     stmt, ev, g = record.statement, record.gap.evidence, record.gap
 
@@ -146,18 +132,17 @@ def _recovery(record: NormalizedRecord, slot: str, system: str) -> dict:
         terms = [stmt.display_name, stmt.original_text]
     # add any normalized term the handler produced
     terms += [ev.get("analyte_normalized"), ev.get("term_normalized"), ev.get("ingredient")]
-    # SNOMED only, Problems/Allergies/Social History only: append trailing
-    # label context from the section-appropriate slot (see constants above).
+    # SNOMED: guarantee the TARGET slot's own labels are present, mirroring
+    # `target.slot` in the output record — code-slot gaps carry the code tag's
+    # displayName/originalText, value-slot gaps the value tag's.
     if system == System.SNOMEDCT.value:
-        if (stmt.section_code in _SNOMED_CODE_LABEL_SECTIONS
-                or stmt.context in _SNOMED_CODE_LABEL_CONTEXTS):
-            terms += [stmt.display_name, stmt.original_text]
-        elif (stmt.section_code in _SNOMED_VALUE_LABEL_SECTIONS
-                or stmt.context in _SNOMED_VALUE_LABEL_CONTEXTS):
+        if slot == "value":
             if stmt.value:
                 terms += [stmt.value.coded_value.display
                           if stmt.value.coded_value else None,
                           stmt.value.original_text]
+        else:
+            terms += [stmt.display_name, stmt.original_text]
 
     rec = {
         "search_terms": _dedupe(terms),

{aimedicalcoding-0.3.4 → aimedicalcoding-0.3.5/aimedicalcoding.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aimedicalcoding
-Version: 0.3.4
+Version: 0.3.5
 Summary: Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / ICD-10-CM / CVX) in CCDA and FHIR documents, with recovery evidence
 Author: Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan
 License: MIT

{aimedicalcoding-0.3.4 → aimedicalcoding-0.3.5}/docs/GAP_SCHEMA.md

@@ -89,12 +89,9 @@ Each record separates four concerns:
 - `target.slot = "code"` (LOINC) → search `observation.code.display_text` / `.original_text`.
 - `target.slot = "value"` (SNOMED value-slot) → search `observation.value.display_text` / `.original_text`.
 `recovery.search_terms` already gives you the right ones, deduped.
-For **SNOMED-CT** targets, extra label context is appended at the end,
-section-specific: **Social History (29762-2)** appends the CODE tag's
-`display_text`/`original_text` (the question — useful when the value label
-is a placeholder like "Not on file"); **Problems (11450-4)** and
-**Allergies (48765-2)** append the VALUE tag's labels (the concept — the
-code tag there is a generic marker like ASSERTION/"Problem").
+For **SNOMED-CT** targets the terms follow `target.slot`: value-slot gaps
+carry the VALUE tag's `display_text`/`original_text`, code-slot gaps the
+CODE tag's — the other slot's labels are not mixed in.
 
 ---
 

{aimedicalcoding-0.3.4 → aimedicalcoding-0.3.5}/setup.py

@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
 
 setup(
     name="aimedicalcoding",
-    version="0.3.4",
+    version="0.3.5",
     author="Aakash Kag, Vinay Shankar Miryala, Siva Karthik, Mohammed Rayaan",
     description=(
         "Detect missing/broken clinical codes (LOINC / SNOMED CT / RxNorm / "