aignostics 1.2.0__tar.gz → 1.3.0__tar.gz

{aignostics-1.2.0 → aignostics-1.3.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aignostics
-Version: 1.2.0
+Version: 1.3.0
 Summary: 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
 Project-URL: Homepage, https://aignostics.readthedocs.io/en/latest/
 Project-URL: Documentation, https://aignostics.readthedocs.io/en/latest/
@@ -58,7 +58,7 @@ Requires-Dist: dicom-validator<1,>=0.7.3
 Requires-Dist: dicomweb-client[gcp]<1,>=0.59.3
 Requires-Dist: duckdb<=2,>=1.4.2
 Requires-Dist: fastapi[all,standard]>=0.123.10
-Requires-Dist: fastmcp<3,>=2.0.0
+Requires-Dist: fastmcp<4,>=3.2.0
 Requires-Dist: fastparquet<2026.0.0,>=2025.12.0; python_version < '3.14'
 Requires-Dist: filelock>=3.20.1
 Requires-Dist: google-cloud-storage<4,>=3.6.0
@@ -67,7 +67,7 @@ Requires-Dist: highdicom<1,>=0.26.1; python_version < '3.14'
 Requires-Dist: html-sanitizer<3,>=2.6.0
 Requires-Dist: httpx<1,>=0.28.1
 Requires-Dist: humanize<5,>=4.14.0
-Requires-Dist: idc-index-data==23.2.7
+Requires-Dist: idc-index-data==23.8.1
 Requires-Dist: ijson<4,>=3.4.0.post0
 Requires-Dist: jsf<1,>=0.11.2
 Requires-Dist: jsonschema[format-nongpl]<5,>=4.25.1
@@ -77,7 +77,7 @@ Requires-Dist: marshmallow>=3.26.2
 Requires-Dist: nicegui[native]<4,>=3.5.0
 Requires-Dist: openslide-bin<5,>=4.0.0.10
 Requires-Dist: openslide-python<2,>=1.4.3
-Requires-Dist: packaging<26,>=25.0
+Requires-Dist: packaging<27,>=26
 Requires-Dist: pandas<3,>=2.3.3
 Requires-Dist: pillow>=11.3.0
 Requires-Dist: platformdirs<5,>=4.3.2
@@ -91,7 +91,7 @@ Requires-Dist: python-dateutil<3,>=2.9.0.post0
 Requires-Dist: pywin32<312,>=311; sys_platform == 'win32'
 Requires-Dist: pyyaml<7,>=6.0.3
 Requires-Dist: requests-oauthlib<3,>=2.0.0
-Requires-Dist: requests<3,>=2.32.5
+Requires-Dist: requests<3,>=2.33.0
 Requires-Dist: rfc3987; sys_platform == 'never'
 Requires-Dist: s5cmd<1,>=0.3.3
 Requires-Dist: semver<4,>=3.0.4
@@ -104,7 +104,6 @@ Requires-Dist: tornado>=6.5.0
 Requires-Dist: tqdm<5,>=4.67.1
 Requires-Dist: truststore<1,>=0.10.4
 Requires-Dist: typer<1,>=0.20.0
-Requires-Dist: uptime<4,>=3.0.1
 Requires-Dist: urllib3<3,>=2.6.3
 Requires-Dist: urllib3>=2.5.0
 Requires-Dist: wsidicom<1,>=0.28.1
@@ -130,7 +129,7 @@ Description-Content-Type: text/markdown
 
 [![License](https://img.shields.io/github/license/aignostics/python-sdk?logo=opensourceinitiative&logoColor=3DA639&labelColor=414042&color=A41831)](https://github.com/aignostics/python-sdk/blob/main/LICENSE)
 [![Python Version](https://img.shields.io/pypi/pyversions/aignostics.svg?logo=python&color=204361&labelColor=1E2933)](https://pypi.org/project/aignostics/)
-[![CI/CD](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml/badge.svg)](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml)
+[![CI/CD](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml/badge.svg?branch=main)](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml)
 [![Docs](https://img.shields.io/readthedocs/aignostics)](https://aignostics.readthedocs.io/en/latest/)
 [![Quality Gate](https://sonarcloud.io/api/project_badges/measure?project=aignostics_python-sdk&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=aignostics_python-sdk)
 [![Security](https://sonarcloud.io/api/project_badges/measure?project=aignostics_python-sdk&metric=security_rating)](https://sonarcloud.io/summary/new_code?id=aignostics_python-sdk)
@@ -138,12 +137,6 @@ Description-Content-Type: text/markdown
 [![Coverage](https://codecov.io/gh/aignostics/python-sdk/graph/badge.svg?token=SX34YRP30E)](https://codecov.io/gh/aignostics/python-sdk)
 [![Uptime](https://uptime.betterstack.com/status-badges/v2/monitor/1wbqa.svg)](https://aignostics.betteruptime.com)
 
-> [!NOTE]
-> The Aignostics Python SDK is in alpha, with [Atlas H&E-TME](https://www.aignostics.com/products/he-tme-profiling-product) and the [Aignostics Platform](https://platform.aignostics.com) in [early access](https://www.linkedin.com/posts/aignostics_introducing-atlas-he-tme-aignostics-is-activity-7325865745827979265-Sya9?utm_source=share&utm_medium=member_desktop&rcm=ACoAABRmV7cBCGv8eM_ot_kRTrBsb12olQvoLS4). 
-> Watch or star this repository to receive updates on new features and improvements of the SDK.
-
----
-
 
 ## Introduction
 

{aignostics-1.2.0 → aignostics-1.3.0}/README.md

@@ -5,7 +5,7 @@
 
 [![License](https://img.shields.io/github/license/aignostics/python-sdk?logo=opensourceinitiative&logoColor=3DA639&labelColor=414042&color=A41831)](https://github.com/aignostics/python-sdk/blob/main/LICENSE)
 [![Python Version](https://img.shields.io/pypi/pyversions/aignostics.svg?logo=python&color=204361&labelColor=1E2933)](https://pypi.org/project/aignostics/)
-[![CI/CD](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml/badge.svg)](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml)
+[![CI/CD](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml/badge.svg?branch=main)](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml)
 [![Docs](https://img.shields.io/readthedocs/aignostics)](https://aignostics.readthedocs.io/en/latest/)
 [![Quality Gate](https://sonarcloud.io/api/project_badges/measure?project=aignostics_python-sdk&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=aignostics_python-sdk)
 [![Security](https://sonarcloud.io/api/project_badges/measure?project=aignostics_python-sdk&metric=security_rating)](https://sonarcloud.io/summary/new_code?id=aignostics_python-sdk)
@@ -13,12 +13,6 @@
 [![Coverage](https://codecov.io/gh/aignostics/python-sdk/graph/badge.svg?token=SX34YRP30E)](https://codecov.io/gh/aignostics/python-sdk)
 [![Uptime](https://uptime.betterstack.com/status-badges/v2/monitor/1wbqa.svg)](https://aignostics.betteruptime.com)
 
-> [!NOTE]
-> The Aignostics Python SDK is in alpha, with [Atlas H&E-TME](https://www.aignostics.com/products/he-tme-profiling-product) and the [Aignostics Platform](https://platform.aignostics.com) in [early access](https://www.linkedin.com/posts/aignostics_introducing-atlas-he-tme-aignostics-is-activity-7325865745827979265-Sya9?utm_source=share&utm_medium=member_desktop&rcm=ACoAABRmV7cBCGv8eM_ot_kRTrBsb12olQvoLS4). 
-> Watch or star this repository to receive updates on new features and improvements of the SDK.
-
----
-
 
 ## Introduction
 

{aignostics-1.2.0 → aignostics-1.3.0}/codegen/out/.openapi-generator/FILES

@@ -32,6 +32,8 @@ aignx/codegen/models/run_output.py
 aignx/codegen/models/run_read_response.py
 aignx/codegen/models/run_state.py
 aignx/codegen/models/run_termination_reason.py
+aignx/codegen/models/scheduling_request.py
+aignx/codegen/models/scheduling_response.py
 aignx/codegen/models/user_read_response.py
 aignx/codegen/models/validation_error.py
 aignx/codegen/models/validation_error_loc_inner.py

{aignostics-1.2.0 → aignostics-1.3.0}/codegen/out/aignx/codegen/api/public_api.py

@@ -5,7 +5,7 @@
 
      The Aignostics Platform is a cloud-based service that enables organizations to access advanced computational pathology applications through a secure API.  The platform provides standardized access to Aignostics' portfolio of computational pathology solutions, with Atlas H&E-TME serving as an example of the available API endpoints.   To begin using the platform, your organization must first be registered by our business support team. If you don't have an account yet, please contact your account manager or email support@aignostics.com to get started.   More information about our applications can be found on [https://platform.aignostics.com](https://platform.aignostics.com).  **How to authorize and test API endpoints:**  1. Click the \"Authorize\" button in the right corner below 3. Click \"Authorize\" button in the dialog to log in with your Aignostics Platform credentials 4. After successful login, you'll be redirected back and can use \"Try it out\" on any endpoint  **Note**: You only need to authorize once per session. The lock icons next to endpoints will show green when authorized.  
 
-    The version of the OpenAPI document: 1.0.0-ga
+    The version of the OpenAPI document: 1.4.0
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -16,7 +16,7 @@ from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt
 from typing import Any, Dict, List, Optional, Tuple, Union
 from typing_extensions import Annotated
 
-from pydantic import Field, StrictStr
+from pydantic import Field, StrictStr, field_validator
 from typing import Any, List, Optional
 from typing_extensions import Annotated
 from aignx.codegen.models.application_read_response import ApplicationReadResponse
@@ -54,7 +54,7 @@ class PublicApi:
     def application_version_details_v1_applications_application_id_versions_version_get(
         self,
         application_id: StrictStr,
-        version: StrictStr,
+        version: Annotated[str, Field(strict=True)],
         _request_timeout: Union[
             None,
             Annotated[StrictFloat, Field(gt=0)],
@@ -128,7 +128,7 @@ class PublicApi:
     def application_version_details_v1_applications_application_id_versions_version_get_with_http_info(
         self,
         application_id: StrictStr,
-        version: StrictStr,
+        version: Annotated[str, Field(strict=True)],
         _request_timeout: Union[
             None,
             Annotated[StrictFloat, Field(gt=0)],
@@ -202,7 +202,7 @@ class PublicApi:
     def application_version_details_v1_applications_application_id_versions_version_get_without_preload_content(
         self,
         application_id: StrictStr,
-        version: StrictStr,
+        version: Annotated[str, Field(strict=True)],
         _request_timeout: Union[
             None,
             Annotated[StrictFloat, Field(gt=0)],
@@ -1161,6 +1161,297 @@ class PublicApi:
 
 
 
+    @validate_call
+    def get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get(
+        self,
+        run_id: Annotated[StrictStr, Field(description="Run id, returned by `POST /runs/` endpoint")],
+        artifact_id: Annotated[StrictStr, Field(description="The artifact id to download")],
+        _request_timeout: Union[
+            None,
+            Annotated[StrictFloat, Field(gt=0)],
+            Tuple[
+                Annotated[StrictFloat, Field(gt=0)],
+                Annotated[StrictFloat, Field(gt=0)]
+            ]
+        ] = None,
+        _request_auth: Optional[Dict[StrictStr, Any]] = None,
+        _content_type: Optional[StrictStr] = None,
+        _headers: Optional[Dict[StrictStr, Any]] = None,
+        _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
+    ) -> object:
+        """Get Artifact Url
+
+        Download the artifact file with the specified artifact_id, belonging to the specified run. The artifact_is is returned by the `GET /v1/runs/{run_id}/items` endpoint as part of the item results, and can also be retrieved via `GET /v1/runs/{run_id}/items/{external_id}`.  The endpoint may return a redirect response with a presigned URL to download the artifact file from the storage bucket. The presigned URL is valid for a limited time, so it should be used immediately after receiving the response.
+
+        :param run_id: Run id, returned by `POST /runs/` endpoint (required)
+        :type run_id: str
+        :param artifact_id: The artifact id to download (required)
+        :type artifact_id: str
+        :param _request_timeout: timeout setting for this request. If one
+                                 number provided, it will be total request
+                                 timeout. It can also be a pair (tuple) of
+                                 (connection, read) timeouts.
+        :type _request_timeout: int, tuple(int, int), optional
+        :param _request_auth: set to override the auth_settings for an a single
+                              request; this effectively ignores the
+                              authentication in the spec for a single request.
+        :type _request_auth: dict, optional
+        :param _content_type: force content-type for the request.
+        :type _content_type: str, Optional
+        :param _headers: set to override the headers for a single
+                         request; this effectively ignores the headers
+                         in the spec for a single request.
+        :type _headers: dict, optional
+        :param _host_index: set to override the host_index for a single
+                            request; this effectively ignores the host_index
+                            in the spec for a single request.
+        :type _host_index: int, optional
+        :return: Returns the result object.
+        """ # noqa: E501
+
+        _param = self._get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get_serialize(
+            run_id=run_id,
+            artifact_id=artifact_id,
+            _request_auth=_request_auth,
+            _content_type=_content_type,
+            _headers=_headers,
+            _host_index=_host_index
+        )
+
+        _response_types_map: Dict[str, Optional[str]] = {
+            '200': "object",
+            '404': None,
+            '307': None,
+            '403': None,
+            '410': None,
+            '422': "HTTPValidationError",
+        }
+        response_data = self.api_client.call_api(
+            *_param,
+            _request_timeout=_request_timeout
+        )
+        response_data.read()
+        return self.api_client.response_deserialize(
+            response_data=response_data,
+            response_types_map=_response_types_map,
+        ).data
+
+
+    @validate_call
+    def get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get_with_http_info(
+        self,
+        run_id: Annotated[StrictStr, Field(description="Run id, returned by `POST /runs/` endpoint")],
+        artifact_id: Annotated[StrictStr, Field(description="The artifact id to download")],
+        _request_timeout: Union[
+            None,
+            Annotated[StrictFloat, Field(gt=0)],
+            Tuple[
+                Annotated[StrictFloat, Field(gt=0)],
+                Annotated[StrictFloat, Field(gt=0)]
+            ]
+        ] = None,
+        _request_auth: Optional[Dict[StrictStr, Any]] = None,
+        _content_type: Optional[StrictStr] = None,
+        _headers: Optional[Dict[StrictStr, Any]] = None,
+        _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
+    ) -> ApiResponse[object]:
+        """Get Artifact Url
+
+        Download the artifact file with the specified artifact_id, belonging to the specified run. The artifact_is is returned by the `GET /v1/runs/{run_id}/items` endpoint as part of the item results, and can also be retrieved via `GET /v1/runs/{run_id}/items/{external_id}`.  The endpoint may return a redirect response with a presigned URL to download the artifact file from the storage bucket. The presigned URL is valid for a limited time, so it should be used immediately after receiving the response.
+
+        :param run_id: Run id, returned by `POST /runs/` endpoint (required)
+        :type run_id: str
+        :param artifact_id: The artifact id to download (required)
+        :type artifact_id: str
+        :param _request_timeout: timeout setting for this request. If one
+                                 number provided, it will be total request
+                                 timeout. It can also be a pair (tuple) of
+                                 (connection, read) timeouts.
+        :type _request_timeout: int, tuple(int, int), optional
+        :param _request_auth: set to override the auth_settings for an a single
+                              request; this effectively ignores the
+                              authentication in the spec for a single request.
+        :type _request_auth: dict, optional
+        :param _content_type: force content-type for the request.
+        :type _content_type: str, Optional
+        :param _headers: set to override the headers for a single
+                         request; this effectively ignores the headers
+                         in the spec for a single request.
+        :type _headers: dict, optional
+        :param _host_index: set to override the host_index for a single
+                            request; this effectively ignores the host_index
+                            in the spec for a single request.
+        :type _host_index: int, optional
+        :return: Returns the result object.
+        """ # noqa: E501
+
+        _param = self._get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get_serialize(
+            run_id=run_id,
+            artifact_id=artifact_id,
+            _request_auth=_request_auth,
+            _content_type=_content_type,
+            _headers=_headers,
+            _host_index=_host_index
+        )
+
+        _response_types_map: Dict[str, Optional[str]] = {
+            '200': "object",
+            '404': None,
+            '307': None,
+            '403': None,
+            '410': None,
+            '422': "HTTPValidationError",
+        }
+        response_data = self.api_client.call_api(
+            *_param,
+            _request_timeout=_request_timeout
+        )
+        response_data.read()
+        return self.api_client.response_deserialize(
+            response_data=response_data,
+            response_types_map=_response_types_map,
+        )
+
+
+    @validate_call
+    def get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get_without_preload_content(
+        self,
+        run_id: Annotated[StrictStr, Field(description="Run id, returned by `POST /runs/` endpoint")],
+        artifact_id: Annotated[StrictStr, Field(description="The artifact id to download")],
+        _request_timeout: Union[
+            None,
+            Annotated[StrictFloat, Field(gt=0)],
+            Tuple[
+                Annotated[StrictFloat, Field(gt=0)],
+                Annotated[StrictFloat, Field(gt=0)]
+            ]
+        ] = None,
+        _request_auth: Optional[Dict[StrictStr, Any]] = None,
+        _content_type: Optional[StrictStr] = None,
+        _headers: Optional[Dict[StrictStr, Any]] = None,
+        _host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
+    ) -> RESTResponseType:
+        """Get Artifact Url
+
+        Download the artifact file with the specified artifact_id, belonging to the specified run. The artifact_is is returned by the `GET /v1/runs/{run_id}/items` endpoint as part of the item results, and can also be retrieved via `GET /v1/runs/{run_id}/items/{external_id}`.  The endpoint may return a redirect response with a presigned URL to download the artifact file from the storage bucket. The presigned URL is valid for a limited time, so it should be used immediately after receiving the response.
+
+        :param run_id: Run id, returned by `POST /runs/` endpoint (required)
+        :type run_id: str
+        :param artifact_id: The artifact id to download (required)
+        :type artifact_id: str
+        :param _request_timeout: timeout setting for this request. If one
+                                 number provided, it will be total request
+                                 timeout. It can also be a pair (tuple) of
+                                 (connection, read) timeouts.
+        :type _request_timeout: int, tuple(int, int), optional
+        :param _request_auth: set to override the auth_settings for an a single
+                              request; this effectively ignores the
+                              authentication in the spec for a single request.
+        :type _request_auth: dict, optional
+        :param _content_type: force content-type for the request.
+        :type _content_type: str, Optional
+        :param _headers: set to override the headers for a single
+                         request; this effectively ignores the headers
+                         in the spec for a single request.
+        :type _headers: dict, optional
+        :param _host_index: set to override the host_index for a single
+                            request; this effectively ignores the host_index
+                            in the spec for a single request.
+        :type _host_index: int, optional
+        :return: Returns the result object.
+        """ # noqa: E501
+
+        _param = self._get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get_serialize(
+            run_id=run_id,
+            artifact_id=artifact_id,
+            _request_auth=_request_auth,
+            _content_type=_content_type,
+            _headers=_headers,
+            _host_index=_host_index
+        )
+
+        _response_types_map: Dict[str, Optional[str]] = {
+            '200': "object",
+            '404': None,
+            '307': None,
+            '403': None,
+            '410': None,
+            '422': "HTTPValidationError",
+        }
+        response_data = self.api_client.call_api(
+            *_param,
+            _request_timeout=_request_timeout
+        )
+        return response_data.response
+
+
+    def _get_artifact_url_v1_runs_run_id_artifacts_artifact_id_file_get_serialize(
+        self,
+        run_id,
+        artifact_id,
+        _request_auth,
+        _content_type,
+        _headers,
+        _host_index,
+    ) -> RequestSerialized:
+
+        _host = None
+
+        _collection_formats: Dict[str, str] = {
+        }
+
+        _path_params: Dict[str, str] = {}
+        _query_params: List[Tuple[str, str]] = []
+        _header_params: Dict[str, Optional[str]] = _headers or {}
+        _form_params: List[Tuple[str, str]] = []
+        _files: Dict[
+            str, Union[str, bytes, List[str], List[bytes], List[Tuple[str, bytes]]]
+        ] = {}
+        _body_params: Optional[bytes] = None
+
+        # process the path parameters
+        if run_id is not None:
+            _path_params['run_id'] = run_id
+        if artifact_id is not None:
+            _path_params['artifact_id'] = artifact_id
+        # process the query parameters
+        # process the header parameters
+        # process the form parameters
+        # process the body parameter
+
+
+        # set the HTTP header `Accept`
+        if 'Accept' not in _header_params:
+            _header_params['Accept'] = self.api_client.select_header_accept(
+                [
+                    'application/json'
+                ]
+            )
+
+
+        # authentication setting
+        _auth_settings: List[str] = [
+            'OAuth2AuthorizationCodeBearer'
+        ]
+
+        return self.api_client.param_serialize(
+            method='GET',
+            resource_path='/api/v1/runs/{run_id}/artifacts/{artifact_id}/file',
+            path_params=_path_params,
+            query_params=_query_params,
+            header_params=_header_params,
+            body=_body_params,
+            post_params=_form_params,
+            files=_files,
+            auth_settings=_auth_settings,
+            collection_formats=_collection_formats,
+            _host=_host,
+            _request_auth=_request_auth
+        )
+
+
+
+
     @validate_call
     def get_item_by_run_v1_runs_run_id_items_external_id_get(
         self,
@@ -1983,7 +2274,7 @@ class PublicApi:
     ) -> List[ApplicationReadShortResponse]:
         """List available applications
 
-        Returns the list of the applications, available to the caller.  The application is available if any of the versions of the application is assigned to the caller’s organization. The response is paginated and sorted according to the provided parameters.
+        Returns the list of the applications, available to the caller.  The application is available if any of the versions of the application is assigned to the caller's organization. The response is paginated and sorted according to the provided parameters.
 
         :param page:
         :type page: int
@@ -2060,7 +2351,7 @@ class PublicApi:
     ) -> ApiResponse[List[ApplicationReadShortResponse]]:
         """List available applications
 
-        Returns the list of the applications, available to the caller.  The application is available if any of the versions of the application is assigned to the caller’s organization. The response is paginated and sorted according to the provided parameters.
+        Returns the list of the applications, available to the caller.  The application is available if any of the versions of the application is assigned to the caller's organization. The response is paginated and sorted according to the provided parameters.
 
         :param page:
         :type page: int
@@ -2137,7 +2428,7 @@ class PublicApi:
     ) -> RESTResponseType:
         """List available applications
 
-        Returns the list of the applications, available to the caller.  The application is available if any of the versions of the application is assigned to the caller’s organization. The response is paginated and sorted according to the provided parameters.
+        Returns the list of the applications, available to the caller.  The application is available if any of the versions of the application is assigned to the caller's organization. The response is paginated and sorted according to the provided parameters.
 
         :param page:
         :type page: int
@@ -2681,7 +2972,8 @@ class PublicApi:
         custom_metadata: Annotated[Optional[Annotated[str, Field(strict=True, max_length=1000)]], Field(description="Use PostgreSQL JSONPath expressions to filter runs by their custom_metadata. #### URL Encoding Required **Important**: JSONPath expressions contain special characters that must be URL-encoded when used in query parameters. Most HTTP clients handle this automatically, but when constructing URLs manually, please ensure proper encoding.  #### Examples (Clear Format): - **Field existence**: `$.study` - Runs that have a study field defined - **Exact value match**: `$.study ? (@ == \"high\")` - Runs with specific study value - **Numeric comparison**: `$.confidence_score ? (@ > 0.75)` - Runs with confidence score greater than 0.75 - **Array operations**: `$.tags[*] ? (@ == \"draft\")` - Runs with tags array containing \"draft\" - **Complex conditions**: `$.resources ? (@.gpu_count > 2 && @.memory_gb >= 16)` - Runs with high resource requirements  #### Examples (URL-Encoded Format): - **Field existence**: `%24.study` - **Exact value match**: `%24.study%20%3F%20(%40%20%3D%3D%20%22high%22)` - **Numeric comparison**: `%24.confidence_score%20%3F%20(%40%20%3E%200.75)` - **Array operations**: `%24.tags%5B*%5D%20%3F%20(%40%20%3D%3D%20%22draft%22)` - **Complex conditions**: `%24.resources%20%3F%20(%40.gpu_count%20%3E%202%20%26%26%20%40.memory_gb%20%3E%3D%2016)`  #### Notes - JSONPath expressions are evaluated using PostgreSQL's `@?` operator - The `$.` prefix is automatically added to root-level field references if missing - String values in conditions must be enclosed in double quotes - Use `&&` for AND operations and `||` for OR operations - Regular expressions use `like_regex` with standard regex syntax - **Please remember to URL-encode the entire JSONPath expression when making HTTP requests**              ")] = None,
         page: Optional[Annotated[int, Field(strict=True, ge=1)]] = None,
         page_size: Optional[Annotated[int, Field(le=100, strict=True, ge=5)]] = None,
-        sort: Annotated[Optional[List[StrictStr]], Field(description="Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `statistics` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) ")] = None,
+        for_organization: Annotated[Optional[StrictStr], Field(description="Filter runs by organization ID. Available for superadmins (any org) and admins (own org only). When provided, returns all runs for the specified organization instead of only the caller's own runs.")] = None,
+        sort: Annotated[Optional[List[StrictStr]], Field(description="Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) ")] = None,
         _request_timeout: Union[
             None,
             Annotated[StrictFloat, Field(gt=0)],
@@ -2711,7 +3003,9 @@ class PublicApi:
         :type page: int
         :param page_size:
         :type page_size: int
-        :param sort: Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `statistics` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) 
+        :param for_organization: Filter runs by organization ID. Available for superadmins (any org) and admins (own org only). When provided, returns all runs for the specified organization instead of only the caller's own runs.
+        :type for_organization: str
+        :param sort: Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) 
         :type sort: List[str]
         :param _request_timeout: timeout setting for this request. If one
                                  number provided, it will be total request
@@ -2742,6 +3036,7 @@ class PublicApi:
             custom_metadata=custom_metadata,
             page=page,
             page_size=page_size,
+            for_organization=for_organization,
             sort=sort,
             _request_auth=_request_auth,
             _content_type=_content_type,
@@ -2774,7 +3069,8 @@ class PublicApi:
         custom_metadata: Annotated[Optional[Annotated[str, Field(strict=True, max_length=1000)]], Field(description="Use PostgreSQL JSONPath expressions to filter runs by their custom_metadata. #### URL Encoding Required **Important**: JSONPath expressions contain special characters that must be URL-encoded when used in query parameters. Most HTTP clients handle this automatically, but when constructing URLs manually, please ensure proper encoding.  #### Examples (Clear Format): - **Field existence**: `$.study` - Runs that have a study field defined - **Exact value match**: `$.study ? (@ == \"high\")` - Runs with specific study value - **Numeric comparison**: `$.confidence_score ? (@ > 0.75)` - Runs with confidence score greater than 0.75 - **Array operations**: `$.tags[*] ? (@ == \"draft\")` - Runs with tags array containing \"draft\" - **Complex conditions**: `$.resources ? (@.gpu_count > 2 && @.memory_gb >= 16)` - Runs with high resource requirements  #### Examples (URL-Encoded Format): - **Field existence**: `%24.study` - **Exact value match**: `%24.study%20%3F%20(%40%20%3D%3D%20%22high%22)` - **Numeric comparison**: `%24.confidence_score%20%3F%20(%40%20%3E%200.75)` - **Array operations**: `%24.tags%5B*%5D%20%3F%20(%40%20%3D%3D%20%22draft%22)` - **Complex conditions**: `%24.resources%20%3F%20(%40.gpu_count%20%3E%202%20%26%26%20%40.memory_gb%20%3E%3D%2016)`  #### Notes - JSONPath expressions are evaluated using PostgreSQL's `@?` operator - The `$.` prefix is automatically added to root-level field references if missing - String values in conditions must be enclosed in double quotes - Use `&&` for AND operations and `||` for OR operations - Regular expressions use `like_regex` with standard regex syntax - **Please remember to URL-encode the entire JSONPath expression when making HTTP requests**              ")] = None,
         page: Optional[Annotated[int, Field(strict=True, ge=1)]] = None,
         page_size: Optional[Annotated[int, Field(le=100, strict=True, ge=5)]] = None,
-        sort: Annotated[Optional[List[StrictStr]], Field(description="Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `statistics` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) ")] = None,
+        for_organization: Annotated[Optional[StrictStr], Field(description="Filter runs by organization ID. Available for superadmins (any org) and admins (own org only). When provided, returns all runs for the specified organization instead of only the caller's own runs.")] = None,
+        sort: Annotated[Optional[List[StrictStr]], Field(description="Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) ")] = None,
         _request_timeout: Union[
             None,
             Annotated[StrictFloat, Field(gt=0)],
@@ -2804,7 +3100,9 @@ class PublicApi:
         :type page: int
         :param page_size:
         :type page_size: int
-        :param sort: Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `statistics` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) 
+        :param for_organization: Filter runs by organization ID. Available for superadmins (any org) and admins (own org only). When provided, returns all runs for the specified organization instead of only the caller's own runs.
+        :type for_organization: str
+        :param sort: Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) 
         :type sort: List[str]
         :param _request_timeout: timeout setting for this request. If one
                                  number provided, it will be total request
@@ -2835,6 +3133,7 @@ class PublicApi:
             custom_metadata=custom_metadata,
             page=page,
             page_size=page_size,
+            for_organization=for_organization,
             sort=sort,
             _request_auth=_request_auth,
             _content_type=_content_type,
@@ -2867,7 +3166,8 @@ class PublicApi:
         custom_metadata: Annotated[Optional[Annotated[str, Field(strict=True, max_length=1000)]], Field(description="Use PostgreSQL JSONPath expressions to filter runs by their custom_metadata. #### URL Encoding Required **Important**: JSONPath expressions contain special characters that must be URL-encoded when used in query parameters. Most HTTP clients handle this automatically, but when constructing URLs manually, please ensure proper encoding.  #### Examples (Clear Format): - **Field existence**: `$.study` - Runs that have a study field defined - **Exact value match**: `$.study ? (@ == \"high\")` - Runs with specific study value - **Numeric comparison**: `$.confidence_score ? (@ > 0.75)` - Runs with confidence score greater than 0.75 - **Array operations**: `$.tags[*] ? (@ == \"draft\")` - Runs with tags array containing \"draft\" - **Complex conditions**: `$.resources ? (@.gpu_count > 2 && @.memory_gb >= 16)` - Runs with high resource requirements  #### Examples (URL-Encoded Format): - **Field existence**: `%24.study` - **Exact value match**: `%24.study%20%3F%20(%40%20%3D%3D%20%22high%22)` - **Numeric comparison**: `%24.confidence_score%20%3F%20(%40%20%3E%200.75)` - **Array operations**: `%24.tags%5B*%5D%20%3F%20(%40%20%3D%3D%20%22draft%22)` - **Complex conditions**: `%24.resources%20%3F%20(%40.gpu_count%20%3E%202%20%26%26%20%40.memory_gb%20%3E%3D%2016)`  #### Notes - JSONPath expressions are evaluated using PostgreSQL's `@?` operator - The `$.` prefix is automatically added to root-level field references if missing - String values in conditions must be enclosed in double quotes - Use `&&` for AND operations and `||` for OR operations - Regular expressions use `like_regex` with standard regex syntax - **Please remember to URL-encode the entire JSONPath expression when making HTTP requests**              ")] = None,
         page: Optional[Annotated[int, Field(strict=True, ge=1)]] = None,
         page_size: Optional[Annotated[int, Field(le=100, strict=True, ge=5)]] = None,
-        sort: Annotated[Optional[List[StrictStr]], Field(description="Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `statistics` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) ")] = None,
+        for_organization: Annotated[Optional[StrictStr], Field(description="Filter runs by organization ID. Available for superadmins (any org) and admins (own org only). When provided, returns all runs for the specified organization instead of only the caller's own runs.")] = None,
+        sort: Annotated[Optional[List[StrictStr]], Field(description="Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) ")] = None,
         _request_timeout: Union[
             None,
             Annotated[StrictFloat, Field(gt=0)],
@@ -2897,7 +3197,9 @@ class PublicApi:
         :type page: int
         :param page_size:
         :type page_size: int
-        :param sort: Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `statistics` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) 
+        :param for_organization: Filter runs by organization ID. Available for superadmins (any org) and admins (own org only). When provided, returns all runs for the specified organization instead of only the caller's own runs.
+        :type for_organization: str
+        :param sort: Sort the results by one or more fields. Use `+` for ascending and `-` for descending order.  **Available fields:** - `run_id` - `application_id` - `version_number` - `custom_metadata` - `submitted_at` - `submitted_by` - `terminated_at` - `termination_reason`  **Examples:** - `?sort=submitted_at` - Sort by creation time (ascending) - `?sort=-submitted_at` - Sort by creation time (descending) - `?sort=state&sort=-submitted_at` - Sort by state, then by time (descending) 
         :type sort: List[str]
         :param _request_timeout: timeout setting for this request. If one
                                  number provided, it will be total request
@@ -2928,6 +3230,7 @@ class PublicApi:
             custom_metadata=custom_metadata,
             page=page,
             page_size=page_size,
+            for_organization=for_organization,
             sort=sort,
             _request_auth=_request_auth,
             _content_type=_content_type,
@@ -2955,6 +3258,7 @@ class PublicApi:
         custom_metadata,
         page,
         page_size,
+        for_organization,
         sort,
         _request_auth,
         _content_type,
@@ -3003,6 +3307,10 @@ class PublicApi:
             
             _query_params.append(('page_size', page_size))
             
+        if for_organization is not None:
+            
+            _query_params.append(('for_organization', for_organization))
+            
         if sort is not None:
             
             _query_params.append(('sort', sort))

{aignostics-1.2.0 → aignostics-1.3.0}/codegen/out/aignx/codegen/api_client.py

@@ -5,7 +5,7 @@
 
      The Aignostics Platform is a cloud-based service that enables organizations to access advanced computational pathology applications through a secure API.  The platform provides standardized access to Aignostics' portfolio of computational pathology solutions, with Atlas H&E-TME serving as an example of the available API endpoints.   To begin using the platform, your organization must first be registered by our business support team. If you don't have an account yet, please contact your account manager or email support@aignostics.com to get started.   More information about our applications can be found on [https://platform.aignostics.com](https://platform.aignostics.com).  **How to authorize and test API endpoints:**  1. Click the \"Authorize\" button in the right corner below 3. Click \"Authorize\" button in the dialog to log in with your Aignostics Platform credentials 4. After successful login, you'll be redirected back and can use \"Try it out\" on any endpoint  **Note**: You only need to authorize once per session. The lock icons next to endpoints will show green when authorized.  
 
-    The version of the OpenAPI document: 1.0.0-ga
+    The version of the OpenAPI document: 1.4.0
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.

{aignostics-1.2.0 → aignostics-1.3.0}/codegen/out/aignx/codegen/configuration.py

@@ -5,7 +5,7 @@
 
      The Aignostics Platform is a cloud-based service that enables organizations to access advanced computational pathology applications through a secure API.  The platform provides standardized access to Aignostics' portfolio of computational pathology solutions, with Atlas H&E-TME serving as an example of the available API endpoints.   To begin using the platform, your organization must first be registered by our business support team. If you don't have an account yet, please contact your account manager or email support@aignostics.com to get started.   More information about our applications can be found on [https://platform.aignostics.com](https://platform.aignostics.com).  **How to authorize and test API endpoints:**  1. Click the \"Authorize\" button in the right corner below 3. Click \"Authorize\" button in the dialog to log in with your Aignostics Platform credentials 4. After successful login, you'll be redirected back and can use \"Try it out\" on any endpoint  **Note**: You only need to authorize once per session. The lock icons next to endpoints will show green when authorized.  
 
-    The version of the OpenAPI document: 1.0.0-ga
+    The version of the OpenAPI document: 1.4.0
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.
@@ -502,7 +502,7 @@ class Configuration:
         return "Python SDK Debug Report:\n"\
                "OS: {env}\n"\
                "Python Version: {pyversion}\n"\
-               "Version of the API: 1.0.0-ga\n"\
+               "Version of the API: 1.4.0\n"\
                "SDK Package Version: 1.0.0".\
                format(env=sys.platform, pyversion=sys.version)
 

{aignostics-1.2.0 → aignostics-1.3.0}/codegen/out/aignx/codegen/exceptions.py

@@ -5,7 +5,7 @@
 
      The Aignostics Platform is a cloud-based service that enables organizations to access advanced computational pathology applications through a secure API.  The platform provides standardized access to Aignostics' portfolio of computational pathology solutions, with Atlas H&E-TME serving as an example of the available API endpoints.   To begin using the platform, your organization must first be registered by our business support team. If you don't have an account yet, please contact your account manager or email support@aignostics.com to get started.   More information about our applications can be found on [https://platform.aignostics.com](https://platform.aignostics.com).  **How to authorize and test API endpoints:**  1. Click the \"Authorize\" button in the right corner below 3. Click \"Authorize\" button in the dialog to log in with your Aignostics Platform credentials 4. After successful login, you'll be redirected back and can use \"Try it out\" on any endpoint  **Note**: You only need to authorize once per session. The lock icons next to endpoints will show green when authorized.  
 
-    The version of the OpenAPI document: 1.0.0-ga
+    The version of the OpenAPI document: 1.4.0
     Generated by OpenAPI Generator (https://openapi-generator.tech)
 
     Do not edit the class manually.