aignostics 0.2.230__tar.gz → 0.2.232__tar.gz

{aignostics-0.2.230 → aignostics-0.2.232}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aignostics
-Version: 0.2.230
+Version: 0.2.232
 Summary: 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
 Project-URL: Homepage, https://aignostics.readthedocs.io/en/latest/
 Project-URL: Documentation, https://aignostics.readthedocs.io/en/latest/
@@ -49,6 +49,7 @@ Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: 3.14
 Classifier: Typing :: Typed
 Requires-Python: <3.15,>=3.11
+Requires-Dist: aiohttp>=3.12.14
 Requires-Dist: boto3<2,>=1.42.4
 Requires-Dist: certifi>=2025.11.12
 Requires-Dist: crc32c<3,>=2.8
@@ -59,7 +60,8 @@ Requires-Dist: duckdb<=2,>=1.4.2
 Requires-Dist: fastapi[all,standard]>=0.123.10
 Requires-Dist: fastparquet>=2024.11.0; python_version < '3.14'
 Requires-Dist: google-cloud-storage<4,>=3.6.0
-Requires-Dist: highdicom<1,>=0.26.1
+Requires-Dist: h11>=0.16.0
+Requires-Dist: highdicom<1,>=0.26.1; python_version < '3.14'
 Requires-Dist: html-sanitizer<3,>=2.6.0
 Requires-Dist: httpx<1,>=0.28.1
 Requires-Dist: humanize<5,>=4.14.0
@@ -68,11 +70,13 @@ Requires-Dist: ijson<4,>=3.4.0.post0
 Requires-Dist: jsf<1,>=0.11.2
 Requires-Dist: jsonschema[format-nongpl]<5,>=4.25.1
 Requires-Dist: loguru<1,>=0.7.3
-Requires-Dist: nicegui[native]<4,>=3.3.1
+Requires-Dist: lxml>=6.0.2
+Requires-Dist: nicegui[native]<4,>=3.4.0
 Requires-Dist: openslide-bin<5,>=4.0.0.10
 Requires-Dist: openslide-python<2,>=1.4.3
 Requires-Dist: packaging<26,>=25.0
 Requires-Dist: pandas<3,>=2.3.3
+Requires-Dist: pillow>=11.3.0
 Requires-Dist: platformdirs<5,>=4.3.2
 Requires-Dist: platformdirs<5,>=4.5.1
 Requires-Dist: procrastinate>=3.5.3
@@ -85,23 +89,30 @@ Requires-Dist: pywin32<312,>=311; sys_platform == 'win32'
 Requires-Dist: pyyaml<7,>=6.0.3
 Requires-Dist: requests-oauthlib<3,>=2.0.0
 Requires-Dist: requests<3,>=2.32.5
+Requires-Dist: rfc3987; sys_platform == 'never'
 Requires-Dist: s5cmd<1,>=0.3.3
 Requires-Dist: semver<4,>=3.0.4
 Requires-Dist: sentry-sdk<3,>=2.47.0
 Requires-Dist: shapely<3,>=2.1.2
+Requires-Dist: starlette>=0.47.2
+Requires-Dist: starlette>=0.49.1
 Requires-Dist: tenacity<10,>=9.1.2
+Requires-Dist: tornado>=6.5.0
 Requires-Dist: tqdm<5,>=4.67.1
 Requires-Dist: truststore<1,>=0.10.4
 Requires-Dist: typer<1,>=0.20.0
 Requires-Dist: uptime<4,>=3.0.1
-Requires-Dist: urllib3<3,>=2.5.0
+Requires-Dist: urllib3<3,>=2.6.1
+Requires-Dist: urllib3>=2.5.0
 Requires-Dist: wsidicom<1,>=0.28.1
 Provides-Extra: jupyter
+Requires-Dist: jupyter-core>=5.8.1; extra == 'jupyter'
 Requires-Dist: jupyter<2,>=1.1.1; extra == 'jupyter'
+Requires-Dist: jupyterlab>=4.4.9; extra == 'jupyter'
 Provides-Extra: marimo
 Requires-Dist: cloudpathlib<1,>=0.23.0; extra == 'marimo'
 Requires-Dist: ipython<10,>=9.8.0; extra == 'marimo'
-Requires-Dist: marimo<1,>=0.18.3; extra == 'marimo'
+Requires-Dist: marimo<1,>=0.18.4; extra == 'marimo'
 Requires-Dist: matplotlib<4,>=3.10.7; extra == 'marimo'
 Requires-Dist: shapely<3,>=2.1.0; extra == 'marimo'
 Provides-Extra: pyinstaller

aignostics-0.2.232/dist_native_all/dist_native-macos-15-intel/extracted/aignostics.app/Contents/Frameworks/boto3/examples/cloudfront.rst

@@ -0,0 +1,35 @@
+Generate a signed URL for Amazon CloudFront
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to generate a signed URL for Amazon CloudFront.
+Note that you will need the ``cryptography`` `library <https://cryptography.io/en/latest/>`__ to follow this example::
+
+    import datetime
+
+    from cryptography.hazmat.backends import default_backend
+    from cryptography.hazmat.primitives import hashes
+    from cryptography.hazmat.primitives import serialization
+    from cryptography.hazmat.primitives.asymmetric import padding
+    from botocore.signers import CloudFrontSigner
+
+
+    def rsa_signer(message):
+        with open('path/to/key.pem', 'rb') as key_file:
+            private_key = serialization.load_pem_private_key(
+                key_file.read(),
+                password=None,
+                backend=default_backend()
+            )
+        return private_key.sign(message, padding.PKCS1v15(), hashes.SHA1())
+
+    key_id = 'AKIAIOSFODNN7EXAMPLE'
+    url = 'http://d2949o5mkkp72v.cloudfront.net/hello.txt'
+    expire_date = datetime.datetime(2017, 1, 1)
+
+    cloudfront_signer = CloudFrontSigner(key_id, rsa_signer)
+
+    # Create a signed url that will be valid until the specific expiry date
+    # provided using a canned policy.
+    signed_url = cloudfront_signer.generate_presigned_url(
+        url, date_less_than=expire_date)
+    print(signed_url)

aignostics-0.2.232/dist_native_all/dist_native-macos-15-intel/extracted/aignostics.app/Contents/Frameworks/boto3/examples/s3.rst

@@ -0,0 +1,185 @@
+List objects in an Amazon S3 bucket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to use an Amazon S3 bucket resource to list
+the objects in the bucket.
+
+.. code-block:: python
+
+    import boto3
+
+    s3 = boto3.resource('s3')
+    bucket = s3.Bucket('amzn-s3-demo-bucket')
+    for obj in bucket.objects.all():
+        print(obj.key)
+
+
+List top-level common prefixes in Amazon S3 bucket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to list all of the top-level common prefixes in an
+Amazon S3 bucket:
+
+.. code-block:: python
+
+    import boto3
+
+    client = boto3.client('s3')
+    paginator = client.get_paginator('list_objects')
+    result = paginator.paginate(Bucket='amzn-s3-demo-bucket', Delimiter='/')
+    for prefix in result.search('CommonPrefixes'):
+        print(prefix.get('Prefix'))
+
+
+Restore Glacier objects in an Amazon S3 bucket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to initiate restoration of glacier objects in
+an Amazon S3 bucket, determine if a restoration is on-going, and determine if a
+restoration is finished.
+
+.. code-block:: python
+
+    import boto3
+
+    s3 = boto3.resource('s3')
+    bucket = s3.Bucket('amzn-s3-demo-bucket')
+    for obj_sum in bucket.objects.all():
+        obj = s3.Object(obj_sum.bucket_name, obj_sum.key)
+        if obj.storage_class == 'GLACIER':
+            # Try to restore the object if the storage class is glacier and
+            # the object does not have a completed or ongoing restoration
+            # request.
+            if obj.restore is None:
+                print('Submitting restoration request: %s' % obj.key)
+                obj.restore_object(RestoreRequest={'Days': 1})
+            # Print out objects whose restoration is on-going
+            elif 'ongoing-request="true"' in obj.restore:
+                print('Restoration in-progress: %s' % obj.key)
+            # Print out objects whose restoration is complete
+            elif 'ongoing-request="false"' in obj.restore:
+                print('Restoration complete: %s' % obj.key)
+
+
+Uploading/downloading files using SSE KMS
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to use SSE-KMS to upload objects using
+server side encryption with a key managed by KMS.
+
+We can either use the default KMS master key, or create a
+custom key in AWS and use it to encrypt the object by passing in its
+key id.
+
+With KMS, nothing else needs to be provided for getting the
+object; S3 already knows how to decrypt the object.
+
+
+.. code-block:: python
+
+    import boto3
+    import os
+
+    BUCKET = 'amzn-s3-demo-bucket'
+    s3 = boto3.client('s3')
+    keyid = '<the key id>'
+
+    print("Uploading S3 object with SSE-KMS")
+    s3.put_object(Bucket=BUCKET,
+                  Key='encrypt-key',
+                  Body=b'foobar',
+                  ServerSideEncryption='aws:kms',
+                  # Optional: SSEKMSKeyId
+                  SSEKMSKeyId=keyid)
+    print("Done")
+
+    # Getting the object:
+    print("Getting S3 object...")
+    response = s3.get_object(Bucket=BUCKET,
+                             Key='encrypt-key')
+    print("Done, response body:")
+    print(response['Body'].read())
+
+
+Uploading/downloading files using SSE Customer Keys
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to use SSE-C to upload objects using
+server side encryption with a customer provided key.
+
+First, we'll need a 32 byte key.  For this example, we'll
+randomly generate a key but you can use any 32 byte key
+you want.  Remember, you must the same key to download
+the object.  If you lose the encryption key, you lose
+the object.
+
+Also note how we don't have to provide the SSECustomerKeyMD5.
+Boto3 will automatically compute this value for us.
+
+
+.. code-block:: python
+
+    import boto3
+    import os
+
+    BUCKET = 'amzn-s3-demo-bucket'
+    KEY = os.urandom(32)
+    s3 = boto3.client('s3')
+
+    print("Uploading S3 object with SSE-C")
+    s3.put_object(Bucket=BUCKET,
+                  Key='encrypt-key',
+                  Body=b'foobar',
+                  SSECustomerKey=KEY,
+                  SSECustomerAlgorithm='AES256')
+    print("Done")
+
+    # Getting the object:
+    print("Getting S3 object...")
+    # Note how we're using the same ``KEY`` we
+    # created earlier.
+    response = s3.get_object(Bucket=BUCKET,
+                             Key='encrypt-key',
+                             SSECustomerKey=KEY,
+                             SSECustomerAlgorithm='AES256')
+    print("Done, response body:")
+    print(response['Body'].read())
+
+
+Downloading a specific version of an S3 object
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to download a specific version of an
+S3 object.
+
+.. code-block:: python
+
+    import boto3
+    s3 = boto3.client('s3')
+
+    s3.download_file(
+        "amzn-s3-demo-bucket", "key-name", "tmp.txt",
+        ExtraArgs={"VersionId": "my-version-id"}
+    )
+
+
+Filter objects by last modified time using JMESPath
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to filter objects by last modified time
+using JMESPath.
+
+.. code-block:: python
+
+    import boto3
+    s3 = boto3.client("s3")
+
+    s3_paginator = s3.get_paginator('list_objects_v2')
+    s3_iterator = s3_paginator.paginate(Bucket='amzn-s3-demo-bucket')
+
+    filtered_iterator = s3_iterator.search(
+        "Contents[?to_string(LastModified)>='\"2022-01-05 08:05:37+00:00\"'].Key"
+    )
+
+    for key_data in filtered_iterator:
+        print(key_data)

aignostics-0.2.232/dist_native_all/dist_native-macos-latest/extracted/aignostics.app/Contents/Frameworks/boto3/examples/cloudfront.rst

@@ -0,0 +1,35 @@
+Generate a signed URL for Amazon CloudFront
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to generate a signed URL for Amazon CloudFront.
+Note that you will need the ``cryptography`` `library <https://cryptography.io/en/latest/>`__ to follow this example::
+
+    import datetime
+
+    from cryptography.hazmat.backends import default_backend
+    from cryptography.hazmat.primitives import hashes
+    from cryptography.hazmat.primitives import serialization
+    from cryptography.hazmat.primitives.asymmetric import padding
+    from botocore.signers import CloudFrontSigner
+
+
+    def rsa_signer(message):
+        with open('path/to/key.pem', 'rb') as key_file:
+            private_key = serialization.load_pem_private_key(
+                key_file.read(),
+                password=None,
+                backend=default_backend()
+            )
+        return private_key.sign(message, padding.PKCS1v15(), hashes.SHA1())
+
+    key_id = 'AKIAIOSFODNN7EXAMPLE'
+    url = 'http://d2949o5mkkp72v.cloudfront.net/hello.txt'
+    expire_date = datetime.datetime(2017, 1, 1)
+
+    cloudfront_signer = CloudFrontSigner(key_id, rsa_signer)
+
+    # Create a signed url that will be valid until the specific expiry date
+    # provided using a canned policy.
+    signed_url = cloudfront_signer.generate_presigned_url(
+        url, date_less_than=expire_date)
+    print(signed_url)

aignostics-0.2.232/dist_native_all/dist_native-macos-latest/extracted/aignostics.app/Contents/Frameworks/boto3/examples/s3.rst

@@ -0,0 +1,185 @@
+List objects in an Amazon S3 bucket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to use an Amazon S3 bucket resource to list
+the objects in the bucket.
+
+.. code-block:: python
+
+    import boto3
+
+    s3 = boto3.resource('s3')
+    bucket = s3.Bucket('amzn-s3-demo-bucket')
+    for obj in bucket.objects.all():
+        print(obj.key)
+
+
+List top-level common prefixes in Amazon S3 bucket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to list all of the top-level common prefixes in an
+Amazon S3 bucket:
+
+.. code-block:: python
+
+    import boto3
+
+    client = boto3.client('s3')
+    paginator = client.get_paginator('list_objects')
+    result = paginator.paginate(Bucket='amzn-s3-demo-bucket', Delimiter='/')
+    for prefix in result.search('CommonPrefixes'):
+        print(prefix.get('Prefix'))
+
+
+Restore Glacier objects in an Amazon S3 bucket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to initiate restoration of glacier objects in
+an Amazon S3 bucket, determine if a restoration is on-going, and determine if a
+restoration is finished.
+
+.. code-block:: python
+
+    import boto3
+
+    s3 = boto3.resource('s3')
+    bucket = s3.Bucket('amzn-s3-demo-bucket')
+    for obj_sum in bucket.objects.all():
+        obj = s3.Object(obj_sum.bucket_name, obj_sum.key)
+        if obj.storage_class == 'GLACIER':
+            # Try to restore the object if the storage class is glacier and
+            # the object does not have a completed or ongoing restoration
+            # request.
+            if obj.restore is None:
+                print('Submitting restoration request: %s' % obj.key)
+                obj.restore_object(RestoreRequest={'Days': 1})
+            # Print out objects whose restoration is on-going
+            elif 'ongoing-request="true"' in obj.restore:
+                print('Restoration in-progress: %s' % obj.key)
+            # Print out objects whose restoration is complete
+            elif 'ongoing-request="false"' in obj.restore:
+                print('Restoration complete: %s' % obj.key)
+
+
+Uploading/downloading files using SSE KMS
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to use SSE-KMS to upload objects using
+server side encryption with a key managed by KMS.
+
+We can either use the default KMS master key, or create a
+custom key in AWS and use it to encrypt the object by passing in its
+key id.
+
+With KMS, nothing else needs to be provided for getting the
+object; S3 already knows how to decrypt the object.
+
+
+.. code-block:: python
+
+    import boto3
+    import os
+
+    BUCKET = 'amzn-s3-demo-bucket'
+    s3 = boto3.client('s3')
+    keyid = '<the key id>'
+
+    print("Uploading S3 object with SSE-KMS")
+    s3.put_object(Bucket=BUCKET,
+                  Key='encrypt-key',
+                  Body=b'foobar',
+                  ServerSideEncryption='aws:kms',
+                  # Optional: SSEKMSKeyId
+                  SSEKMSKeyId=keyid)
+    print("Done")
+
+    # Getting the object:
+    print("Getting S3 object...")
+    response = s3.get_object(Bucket=BUCKET,
+                             Key='encrypt-key')
+    print("Done, response body:")
+    print(response['Body'].read())
+
+
+Uploading/downloading files using SSE Customer Keys
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to use SSE-C to upload objects using
+server side encryption with a customer provided key.
+
+First, we'll need a 32 byte key.  For this example, we'll
+randomly generate a key but you can use any 32 byte key
+you want.  Remember, you must the same key to download
+the object.  If you lose the encryption key, you lose
+the object.
+
+Also note how we don't have to provide the SSECustomerKeyMD5.
+Boto3 will automatically compute this value for us.
+
+
+.. code-block:: python
+
+    import boto3
+    import os
+
+    BUCKET = 'amzn-s3-demo-bucket'
+    KEY = os.urandom(32)
+    s3 = boto3.client('s3')
+
+    print("Uploading S3 object with SSE-C")
+    s3.put_object(Bucket=BUCKET,
+                  Key='encrypt-key',
+                  Body=b'foobar',
+                  SSECustomerKey=KEY,
+                  SSECustomerAlgorithm='AES256')
+    print("Done")
+
+    # Getting the object:
+    print("Getting S3 object...")
+    # Note how we're using the same ``KEY`` we
+    # created earlier.
+    response = s3.get_object(Bucket=BUCKET,
+                             Key='encrypt-key',
+                             SSECustomerKey=KEY,
+                             SSECustomerAlgorithm='AES256')
+    print("Done, response body:")
+    print(response['Body'].read())
+
+
+Downloading a specific version of an S3 object
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to download a specific version of an
+S3 object.
+
+.. code-block:: python
+
+    import boto3
+    s3 = boto3.client('s3')
+
+    s3.download_file(
+        "amzn-s3-demo-bucket", "key-name", "tmp.txt",
+        ExtraArgs={"VersionId": "my-version-id"}
+    )
+
+
+Filter objects by last modified time using JMESPath
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This example shows how to filter objects by last modified time
+using JMESPath.
+
+.. code-block:: python
+
+    import boto3
+    s3 = boto3.client("s3")
+
+    s3_paginator = s3.get_paginator('list_objects_v2')
+    s3_iterator = s3_paginator.paginate(Bucket='amzn-s3-demo-bucket')
+
+    filtered_iterator = s3_iterator.search(
+        "Contents[?to_string(LastModified)>='\"2022-01-05 08:05:37+00:00\"'].Key"
+    )
+
+    for key_data in filtered_iterator:
+        print(key_data)

aignostics-0.2.232/dist_native_all/dist_native-ubuntu-24.04-arm/extracted/aignostics/_internal/boto3/examples/cloudfront.rst

@@ -0,0 +1,35 @@
+Generate a signed URL for Amazon CloudFront
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The following example shows how to generate a signed URL for Amazon CloudFront.
+Note that you will need the ``cryptography`` `library <https://cryptography.io/en/latest/>`__ to follow this example::
+
+    import datetime
+
+    from cryptography.hazmat.backends import default_backend
+    from cryptography.hazmat.primitives import hashes
+    from cryptography.hazmat.primitives import serialization
+    from cryptography.hazmat.primitives.asymmetric import padding
+    from botocore.signers import CloudFrontSigner
+
+
+    def rsa_signer(message):
+        with open('path/to/key.pem', 'rb') as key_file:
+            private_key = serialization.load_pem_private_key(
+                key_file.read(),
+                password=None,
+                backend=default_backend()
+            )
+        return private_key.sign(message, padding.PKCS1v15(), hashes.SHA1())
+
+    key_id = 'AKIAIOSFODNN7EXAMPLE'
+    url = 'http://d2949o5mkkp72v.cloudfront.net/hello.txt'
+    expire_date = datetime.datetime(2017, 1, 1)
+
+    cloudfront_signer = CloudFrontSigner(key_id, rsa_signer)
+
+    # Create a signed url that will be valid until the specific expiry date
+    # provided using a canned policy.
+    signed_url = cloudfront_signer.generate_presigned_url(
+        url, date_less_than=expire_date)
+    print(signed_url)