aignostics 0.2.199__tar.gz → 0.2.201__tar.gz

{aignostics-0.2.199 → aignostics-0.2.201}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aignostics
-Version: 0.2.199
+Version: 0.2.201
 Summary: 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
 Project-URL: Homepage, https://aignostics.readthedocs.io/en/latest/
 Project-URL: Documentation, https://aignostics.readthedocs.io/en/latest/
@@ -49,42 +49,35 @@ Classifier: Programming Language :: Python :: 3.13
 Classifier: Typing :: Typed
 Requires-Python: <3.14,>=3.11
 Requires-Dist: aiopath<1,>=0.6.11
-Requires-Dist: boto3<2,>=1.40.64
-Requires-Dist: certifi<2026,>=2025.10.5
+Requires-Dist: boto3<2,>=1.40.61
+Requires-Dist: certifi<2026,>=2025.11.12
 Requires-Dist: defusedxml>=0.7.1
 Requires-Dist: dicom-validator<1,>=0.7.3
 Requires-Dist: dicomweb-client[gcp]<1,>=0.59.3
 Requires-Dist: duckdb<=1.4.1,>=0.10.0
-Requires-Dist: fastapi[all,standard]<1,>=0.120.4
+Requires-Dist: fastapi[all,standard]<1,>=0.121.1
 Requires-Dist: fastparquet<2025,>=2024.11.0
-Requires-Dist: google-cloud-storage<4,>=3.4.1
+Requires-Dist: google-cloud-storage<4,>=3.5.0
 Requires-Dist: google-crc32c<2,>=1.7.1
 Requires-Dist: highdicom<1,>=0.26.1
 Requires-Dist: html-sanitizer<3,>=2.6.0
 Requires-Dist: httpx<1,>=0.28.1
 Requires-Dist: humanize<5,>=4.14.0
-Requires-Dist: idc-index-data==22.0.2
+Requires-Dist: idc-index-data==22.1.2
 Requires-Dist: ijson<4,>=3.4.0.post0
 Requires-Dist: jsf<1,>=0.11.2
 Requires-Dist: jsonschema[format-nongpl]<5,>=4.25.1
-Requires-Dist: logfire[system-metrics]<5,>=4.14.2
+Requires-Dist: loguru>=0.7.3
 Requires-Dist: nicegui[native]<3.2.0,>=3.1.0
 Requires-Dist: openslide-bin<5,>=4.0.0.8
 Requires-Dist: openslide-python<2,>=1.4.2
-Requires-Dist: opentelemetry-instrumentation-fastapi<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-httpx<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-jinja2<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-requests<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-sqlite3<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-tornado<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-urllib3<1,>=0.53b0
-Requires-Dist: opentelemetry-instrumentation-urllib<1,>=0.53b0
 Requires-Dist: packaging<26,>=25.0
 Requires-Dist: pandas<3,>=2.3.3
 Requires-Dist: platformdirs<5,>=4.3.8
 Requires-Dist: platformdirs<5,>=4.5.0
-Requires-Dist: psutil<8,>=7.1.2
-Requires-Dist: pydantic-settings<3,>=2.11.0
+Requires-Dist: procrastinate>=3.5.3
+Requires-Dist: psutil<8,>=7.1.3
+Requires-Dist: pydantic-settings<3,>=2.12.0
 Requires-Dist: pyjwt[crypto]<3,>=2.10.1
 Requires-Dist: python-dateutil<3,>=2.9.0.post0
 Requires-Dist: pywin32<311,>=310; sys_platform == 'win32'
@@ -93,7 +86,7 @@ Requires-Dist: requests-oauthlib<3,>=2.0.0
 Requires-Dist: requests<3,>=2.32.5
 Requires-Dist: s5cmd<1,>=0.3.3
 Requires-Dist: semver<4,>=3.0.4
-Requires-Dist: sentry-sdk<3,>=2.43.0
+Requires-Dist: sentry-sdk<3,>=2.44.0
 Requires-Dist: shapely<3,>=2.1.2
 Requires-Dist: tenacity<10,>=9.1.2
 Requires-Dist: tqdm<5,>=4.67.1
@@ -106,8 +99,8 @@ Provides-Extra: jupyter
 Requires-Dist: jupyter<2,>=1.1.1; extra == 'jupyter'
 Provides-Extra: marimo
 Requires-Dist: cloudpathlib<1,>=0.23.0; extra == 'marimo'
-Requires-Dist: ipython<10,>=9.6.0; extra == 'marimo'
-Requires-Dist: marimo<1,>=0.17.2; extra == 'marimo'
+Requires-Dist: ipython<10,>=9.7.0; extra == 'marimo'
+Requires-Dist: marimo<1,>=0.17.7; extra == 'marimo'
 Requires-Dist: matplotlib<4,>=3.10.7; extra == 'marimo'
 Requires-Dist: shapely<3,>=2.1.0; extra == 'marimo'
 Provides-Extra: pyinstaller

{aignostics-0.2.199 → aignostics-0.2.201}/examples/notebook.py

@@ -2,7 +2,7 @@
 # requires-python = ">=3.13"
 # dependencies = [
 #     "marimo",
-#     "aignostics==0.2.199",
+#     "aignostics==0.2.201",
 # ]
 # ///
 

{aignostics-0.2.199 → aignostics-0.2.201}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "aignostics"
-version = "0.2.199"
+version = "0.2.201"
 description = "🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library."
 readme = "README.md"
 authors = [
@@ -74,49 +74,42 @@ requires-python = ">=3.11, <3.14"
 
 dependencies = [
     # From Template
-    "fastapi[standard,all]>=0.120.4,<1",
+    "fastapi[standard,all]>=0.121.1,<1",
     "humanize>=4.14.0,<5",
-    "logfire[system-metrics]>=4.14.2,<5",
     "nicegui[native]>=3.1.0,<3.2.0", # Regression in 3.2.0
-    "opentelemetry-instrumentation-fastapi>=0.53b0,<1",
-    "opentelemetry-instrumentation-httpx>=0.53b0,<1",
-    "opentelemetry-instrumentation-jinja2>=0.53b0,<1",
-    "opentelemetry-instrumentation-requests>=0.53b0,<1",
-    "opentelemetry-instrumentation-sqlite3>=0.53b0,<1",
-    "opentelemetry-instrumentation-tornado>=0.53b0,<1",
-    "opentelemetry-instrumentation-urllib>=0.53b0,<1",
-    "opentelemetry-instrumentation-urllib3>=0.53b0,<1",
     "packaging>=25.0,<26",
     "platformdirs>=4.5.0,<5",
-    "psutil>=7.1.2,<8",
-    "pydantic-settings>=2.11.0,<3",
+    "psutil>=7.1.3,<8",
+    "pydantic-settings>=2.12.0,<3",
     "pywin32>=310,<311 ; sys_platform == 'win32'",
     "pyyaml>=6.0.3,<7",
-    "sentry-sdk>=2.43.0,<3",
+    "sentry-sdk>=2.44.0,<3",
     "typer>=0.20.0,<1",
     "uptime>=3.0.1,<4",
     # Custom
     "aiopath>=0.6.11,<1",
-    "boto3>=1.40.64,<2",
-    "certifi>=2025.10.5,<2026",
+    "boto3>=1.40.61,<2",
+    "certifi>=2025.11.12,<2026",
     "defusedxml>=0.7.1",
     "dicom-validator>=0.7.3,<1",
     "dicomweb-client[gcp]>=0.59.3,<1",
     "duckdb>=0.10.0,<=1.4.1",
     "fastparquet>=2024.11.0,<2025",
-    "google-cloud-storage>=3.4.1,<4",
+    "google-cloud-storage>=3.5.0,<4",
     "google-crc32c>=1.7.1,<2",
     "highdicom>=0.26.1,<1",
     "html-sanitizer>=2.6.0,<3",
     "httpx>=0.28.1,<1",
-    "idc-index-data==22.0.2",
+    "idc-index-data==22.1.2",
     "ijson>=3.4.0.post0,<4",
     "jsf>=0.11.2,<1",
     "jsonschema[format-nongpl]>=4.25.1,<5",
+    "loguru>=0.7.3",
     "openslide-bin>=4.0.0.8,<5",
     "openslide-python>=1.4.2,<2",
     "pandas>=2.3.3,<3",
     "platformdirs>=4.3.8,<5",
+    "procrastinate>=3.5.3",
     "pyjwt[crypto]>=2.10.1,<3",
     "python-dateutil>=2.9.0.post0,<3",
     # "pywebview[qt6]>=5.4,<6; sys_platform == 'linux'",
@@ -137,8 +130,8 @@ pyinstaller = ["pyinstaller>=6.14.0,<7"]
 jupyter = ["jupyter>=1.1.1,<2"]
 marimo = [
     "cloudpathlib>=0.23.0,<1",
-    "ipython>=9.6.0,<10",
-    "marimo>=0.17.2,<1",
+    "ipython>=9.7.0,<10",
+    "marimo>=0.17.7,<1",
     "matplotlib>=3.10.7,<4",
     "shapely>=2.1.0,<3",
 ]
@@ -153,15 +146,15 @@ dev = [
     "furo>=2025.9.25,<2026",
     "git-cliff>=2.10.1,<3",
     "mypy>=1.18.2,<2",
-    "nox[uv]>=2025.10.16,<2026",
+    "nox[uv]>=2025.11.12,<2026",
     "pip-audit>=2.9.0,<3",
     "pip-licenses @ git+https://github.com/neXenio/pip-licenses.git@master", # https://github.com/raimon49/pip-licenses/pull/224
-    "pre-commit>=4.3.0,<5",
+    "pre-commit>=4.4.0,<5",
     "pyright>=1.1.406,<1.1.407", # Regression in 1.1.407, see https://github.com/microsoft/pyright/issues/11060
     "pytest>=8.4.2,<9",
-    "pytest-asyncio>=1.2.0,<2",
+    "pytest-asyncio>=1.3.0,<2",
     "pytest-cov>=7.0.0,<8",
-    "pytest-docker>=3.2.3,<4",
+    "pytest-docker>=3.2.5,<4",
     "pytest-durations>=1.6.1,<2",
     "pytest-env>=1.2.0,<2",
     "pytest-md-report>=0.7.0,<1",
@@ -172,7 +165,7 @@ dev = [
     "pytest-timeout>=2.4.0,<3",
     "pytest-watcher>=0.4.3,<1",
     "pytest-xdist[psutil]>=3.8.0,<4",
-    "ruff>=0.14.3,<1",
+    "ruff>=0.14.4,<1",
     "scalene>=1.5.55,<2",
     "sphinx>=8.2.3,<9",
     "sphinx-autobuild>=2025.8.25,<2026",
@@ -274,6 +267,7 @@ ignore = [
     "PTH123",   # use of open to be replaced with Path.open,
     "T201",     # Remove `print`
     "INP001",   # Checks for packages that are missing an __init__.py file.
+    "BLE001",   # Accept for now TODO(Helmut): Add proper exception handling later
 ]
 
 [tool.ruff.lint.per-file-ignores]
@@ -378,7 +372,7 @@ source = ["src/"]
 
 
 [tool.bumpversion]
-current_version = "0.2.199"
+current_version = "0.2.201"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
 serialize = ["{major}.{minor}.{patch}"]
 search = "{current_version}"

aignostics-0.2.201/src/aignostics/__init__.py

@@ -0,0 +1,46 @@
+"""Python SDK providing access to Aignostics AI services."""
+
+import os
+from typing import Any
+
+from .constants import (
+    HETA_APPLICATION_ID,
+    SENTRY_INTEGRATIONS,
+    TEST_APP_APPLICATION_ID,
+    WSI_SUPPORTED_FILE_EXTENSIONS,
+    WSI_SUPPORTED_FILE_EXTENSIONS_TEST_APP,
+)
+from .utils.boot import boot
+
+# Add scheme to HTTP proxy environment variables if missing
+for proxy_var in ["HTTP_PROXY", "HTTPS_PROXY"]:
+    proxy_url = os.environ.get(proxy_var)
+    if proxy_url and not proxy_url.startswith(("http://", "https://")):
+        os.environ[proxy_var] = f"http://{proxy_url}"
+
+
+def _log_filter(record: Any) -> bool:  # noqa: ANN401
+    """Filter out unwanted log messages.
+
+    Args:
+        record: The log record to filter
+
+    Returns:
+        bool: True to log the message, False to filter it out
+    """
+    return not (
+        (record["name"] == "azure.storage.blob._shared.avro.schema" and record["function"] == "register")
+        or (record["name"] == "matplotlib.font_manager" and record["function"] == "_findfont_cached")
+        or (record["name"] == "PIL.PngImagePlugin" and record["function"] == "call")
+        or (record["name"] == "PIL.PngImagePlugin" and record["function"] == "_open")
+    )
+
+
+boot(sentry_integrations=SENTRY_INTEGRATIONS, log_filter=_log_filter)
+
+__all__ = [
+    "HETA_APPLICATION_ID",
+    "TEST_APP_APPLICATION_ID",
+    "WSI_SUPPORTED_FILE_EXTENSIONS",
+    "WSI_SUPPORTED_FILE_EXTENSIONS_TEST_APP",
+]

{aignostics-0.2.199 → aignostics-0.2.201}/src/aignostics/application/CLAUDE.md

@@ -63,6 +63,7 @@ application/
 ```
 
 **Key Separation:**
+
 - **_models.py**: Pydantic models for progress tracking with computed fields
 - **_download.py**: Pure download logic (URLs, artifacts, progress callbacks)
 - **_service.py**: High-level business logic and module integration
@@ -396,6 +397,7 @@ APPLICATION_RUN_DOWNLOAD_CHUNK_SIZE = 1024 * 1024  # 1MB (for streaming download
 **URL Support:**
 
 The download module supports three URL schemes:
+
 1. **gs://** - Google Cloud Storage (converted to signed URLs via `platform.generate_signed_url()`)
 2. **http://** - HTTP URLs (used directly)
 3. **https://** - HTTPS URLs (used directly)
@@ -658,9 +660,9 @@ def test_application_version_use_latest_fallback():
 **Logging Patterns (Actual):**
 
 ```python
-logger = get_logger(__name__)
 
-logger.info("Starting application run", extra={
+
+logger.debug("Starting application run", extra={
     "application_id": app_id,
     "file_count": len(files)
 })
@@ -745,6 +747,7 @@ The application module is organized into focused submodules:
 **SDK Metadata Integration:**
 
 Every run submitted through the application module automatically includes SDK metadata:
+
 - **Run metadata** (v0.0.4): Execution context, user info, CI/CD details, tags, timestamps
 - **Item metadata** (v0.0.3): Platform bucket location, tags, timestamps
 - Automatic attachment via `platform._sdk_metadata.build_run_sdk_metadata()`

{aignostics-0.2.199 → aignostics-0.2.201}/src/aignostics/application/_cli.py

@@ -8,10 +8,11 @@ from pathlib import Path
 from typing import Annotated
 
 import typer
+from loguru import logger
 
 from aignostics.bucket import Service as BucketService
 from aignostics.platform import NotFoundException, RunState
-from aignostics.utils import console, get_logger, get_user_data_directory, sanitize_path
+from aignostics.utils import console, get_user_data_directory, sanitize_path
 
 from ._models import DownloadProgress, DownloadProgressState
 from ._service import Service
@@ -27,7 +28,6 @@ from ._utils import (
 
 MESSAGE_NOT_YET_IMPLEMENTED = "NOT YET IMPLEMENTED"
 
-logger = get_logger(__name__)
 
 cli = typer.Typer(name="application", help="List and inspect applications on Aignostics Platform.")
 
@@ -65,7 +65,7 @@ def application_list(
             try:
                 details = Service().application(app.application_id)
             except Exception as e:
-                logger.exception("Failed to get application details for application '%s'", app.application_id)
+                logger.exception(f"Failed to get application details for application '{app.application_id}'")
                 console.print(
                     f"[error]Error:[/error] Failed to get application details for application "
                     f"'{app.application_id}': {e}"
@@ -96,7 +96,7 @@ def application_list(
             )
 
     if app_count == 0:
-        logger.info("No applications available.")
+        logger.debug("No applications available.")
         console.print("No applications available.")
 
 
@@ -216,11 +216,11 @@ def application_describe(
     try:
         app = Service().application(application_id)
     except NotFoundException:
-        logger.warning("Application with ID '%s' not found.", application_id)
+        logger.warning(f"Application with ID '{application_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Application with ID '{application_id}' not found.")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to describe application with ID '%s'", application_id)
+        logger.exception(f"Failed to describe application with ID '{application_id}'")
         console.print(f"[error]Error:[/error] Failed to describe application: {e}")
         sys.exit(1)
 
@@ -243,7 +243,7 @@ def application_describe(
             try:
                 app_version = Service().application_version(app.application_id, version.number)
             except Exception as e:
-                logger.exception("Failed to get application version for '%s', '%s'", application_id, version.number)
+                logger.exception(f"Failed to get application version for '{application_id}', '{version.number}'")
                 console.print(
                     f"[error]Error:[/error] Failed to get application version for "
                     f"'{application_id}', '{version.number}': {e}"
@@ -484,7 +484,7 @@ def run_prepare(
         ),
     )
     console.print(f"Generated metadata file [bold]{metadata_csv}[/bold]")
-    logger.info("Generated metadata file: '%s'", metadata_csv)
+    logger.debug("Generated metadata file: '{}'", metadata_csv)
 
 
 @run_app.command(name="upload")
@@ -550,7 +550,7 @@ def run_upload(
         source = entry["external_id"]
         source_file_path = Path(source)
         if not source_file_path.is_file():
-            logger.warning("Source file '%s' (row %d) does not exist", source_file_path, i)
+            logger.warning(f"Source file '{source_file_path}' (row {i}) does not exist")
             console.print(f"[warning]Warning:[/warning] Source file '{source_file_path}' (row {i}) does not exist")
             sys.exit(2)
 
@@ -591,7 +591,7 @@ def run_upload(
             upload_progress_callable=update_progress,
         )
 
-    logger.info("Upload completed.")
+    logger.debug("Upload completed.")
     console.print("Upload completed.", style="info")
 
 
@@ -695,7 +695,7 @@ def run_submit(  # noqa: PLR0913, PLR0917
         if not metadata_dict:
             console.print("Could mot read metadata file '%s'", metadata_csv_file)
             sys.exit(2)
-        logger.debug(
+        logger.trace(
             "Submitting run for application '%s' (version: '%s') with metadata: %s",
             application_id,
             app_version.version_number,
@@ -778,7 +778,7 @@ def run_list(  # noqa: PLR0913, PLR0917
             print_runs_verbose(runs) if verbose else print_runs_non_verbose(runs)
             message = f"Listed '{len(runs)}' run(s)."
             console.print(message, style="info")
-            logger.info(message)
+            logger.debug(message)
     except Exception as e:
         logger.exception("Failed to list runs")
         console.print(f"[error]Error:[/error] Failed to list runs: {e}")
@@ -787,17 +787,17 @@ def run_list(  # noqa: PLR0913, PLR0917
 @run_app.command("describe")
 def run_describe(run_id: Annotated[str, typer.Argument(help="Id of the run to describe")]) -> None:
     """Describe run."""
-    logger.debug("Describing run with ID '%s'", run_id)
+    logger.trace("Describing run with ID '{}'", run_id)
 
     try:
         retrieve_and_print_run_details(Service().application_run(run_id))
-        logger.info("Described run with ID '%s'", run_id)
+        logger.debug("Described run with ID '{}'", run_id)
     except NotFoundException:
-        logger.warning("Run with ID '%s' not found.", run_id)
+        logger.warning(f"Run with ID '{run_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to retrieve and print run details for ID '%s'", run_id)
+        logger.exception(f"Failed to retrieve and print run details for ID '{run_id}'")
         console.print(f"[error]Error:[/error] Failed to retrieve run details for ID '{run_id}': {e}")
         sys.exit(1)
 
@@ -808,7 +808,7 @@ def run_dump_metadata(
     pretty: Annotated[bool, typer.Option(help="Pretty print JSON output with indentation")] = False,
 ) -> None:
     """Dump custom metadata of a run as JSON to stdout."""
-    logger.debug("Dumping custom metadata for run with ID '%s'", run_id)
+    logger.trace("Dumping custom metadata for run with ID '{}'", run_id)
 
     try:
         run = Service().application_run(run_id).details()
@@ -820,13 +820,13 @@ def run_dump_metadata(
         else:
             print(json.dumps(custom_metadata))
 
-        logger.info("Dumped custom metadata for run with ID '%s'", run_id)
+        logger.debug("Dumped custom metadata for run with ID '{}'", run_id)
     except NotFoundException:
-        logger.warning("Run with ID '%s' not found.", run_id)
+        logger.warning(f"Run with ID '{run_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to dump custom metadata for run with ID '%s'", run_id)
+        logger.exception(f"Failed to dump custom metadata for run with ID '{run_id}'")
         console.print(f"[error]Error:[/error] Failed to dump custom metadata for run with ID '{run_id}': {e}")
         sys.exit(1)
 
@@ -838,7 +838,7 @@ def run_dump_item_metadata(
     pretty: Annotated[bool, typer.Option(help="Pretty print JSON output with indentation")] = False,
 ) -> None:
     """Dump custom metadata of an item as JSON to stdout."""
-    logger.debug("Dumping custom metadata for item '%s' in run with ID '%s'", external_id, run_id)
+    logger.trace("Dumping custom metadata for item '{}' in run with ID '{}'", external_id, run_id)
 
     try:
         run = Service().application_run(run_id)
@@ -851,7 +851,7 @@ def run_dump_item_metadata(
                 break
 
         if item is None:
-            logger.warning("Item with external ID '%s' not found in run '%s'.", external_id, run_id)
+            logger.warning(f"Item with external ID '{external_id}' not found in run '{run_id}'.")
             print(
                 f"Warning: Item with external ID '{external_id}' not found in run '{run_id}'.",
                 file=sys.stderr,
@@ -866,13 +866,13 @@ def run_dump_item_metadata(
         else:
             print(json.dumps(custom_metadata))
 
-        logger.info("Dumped custom metadata for item '%s' in run with ID '%s'", external_id, run_id)
+        logger.debug("Dumped custom metadata for item '{}' in run with ID '{}'", external_id, run_id)
     except NotFoundException:
-        logger.warning("Run with ID '%s' not found.", run_id)
+        logger.warning(f"Run with ID '{run_id}' not found.")
         print(f"Warning: Run with ID '{run_id}' not found.", file=sys.stderr)
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to dump custom metadata for item '%s' in run with ID '%s'", external_id, run_id)
+        logger.exception(f"Failed to dump custom metadata for item '{external_id}' in run with ID '{run_id}'")
         print(
             f"Error: Failed to dump custom metadata for item '{external_id}' in run with ID '{run_id}': {e}",
             file=sys.stderr,
@@ -885,22 +885,22 @@ def run_cancel(
     run_id: Annotated[str, typer.Argument(..., help="Id of the run to cancel")],
 ) -> None:
     """Cancel run."""
-    logger.debug("Canceling run with ID '%s'", run_id)
+    logger.trace("Canceling run with ID '{}'", run_id)
 
     try:
         Service().application_run_cancel(run_id)
-        logger.info("Canceled run with ID '%s'.", run_id)
+        logger.debug("Canceled run with ID '{}'.", run_id)
         console.print(f"Run with ID '{run_id}' has been canceled.")
     except NotFoundException:
-        logger.warning("Run with ID '%s' not found.", run_id)
+        logger.warning(f"Run with ID '{run_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
         sys.exit(2)
     except ValueError:
-        logger.warning("Run ID '%s' invalid", run_id)
+        logger.warning(f"Run ID '{run_id}' invalid")
         console.print(f"[warning]Warning:[/warning] Run ID '{run_id}' invalid.")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to cancel run with ID '%s'", run_id)
+        logger.exception(f"Failed to cancel run with ID '{run_id}'")
         console.print(f"[bold red]Error:[/bold red] Failed to cancel run with ID '{run_id}': {e}")
         sys.exit(1)
 
@@ -915,7 +915,7 @@ def run_update_metadata(
     """Update custom metadata for a run."""
     import json  # noqa: PLC0415
 
-    logger.debug("Updating custom metadata for run with ID '%s'", run_id)
+    logger.trace("Updating custom metadata for run with ID '{}'", run_id)
 
     try:
         # Parse JSON metadata
@@ -929,18 +929,18 @@ def run_update_metadata(
             sys.exit(1)
 
         Service().application_run_update_custom_metadata(run_id, custom_metadata)
-        logger.info("Updated custom metadata for run with ID '%s'.", run_id)
+        logger.debug("Updated custom metadata for run with ID '{}'.", run_id)
         console.print(f"Successfully updated custom metadata for run with ID '{run_id}'.")
     except NotFoundException:
-        logger.warning("Run with ID '%s' not found.", run_id)
+        logger.warning(f"Run with ID '{run_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
         sys.exit(2)
     except ValueError as e:
-        logger.warning("Run ID '%s' invalid or metadata invalid: %s", run_id, e)
+        logger.warning(f"Run ID '{run_id}' invalid or metadata invalid: {e}")
         console.print(f"[warning]Warning:[/warning] Run ID '{run_id}' invalid or metadata invalid: {e}")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to update custom metadata for run with ID '%s'", run_id)
+        logger.exception(f"Failed to update custom metadata for run with ID '{run_id}'")
         console.print(f"[bold red]Error:[/bold red] Failed to update custom metadata for run with ID '{run_id}': {e}")
         sys.exit(1)
 
@@ -956,7 +956,7 @@ def run_update_item_metadata(
     """Update custom metadata for an item in a run."""
     import json  # noqa: PLC0415
 
-    logger.debug("Updating custom metadata for item '%s' in run with ID '%s'", external_id, run_id)
+    logger.trace("Updating custom metadata for item '{}' in run with ID '{}'", external_id, run_id)
 
     try:
         # Parse JSON metadata
@@ -970,10 +970,10 @@ def run_update_item_metadata(
             sys.exit(1)
 
         Service().application_run_update_item_custom_metadata(run_id, external_id, custom_metadata)
-        logger.info("Updated custom metadata for item '%s' in run with ID '%s'.", external_id, run_id)
+        logger.debug("Updated custom metadata for item '{}' in run with ID '{}'.", external_id, run_id)
         console.print(f"Successfully updated custom metadata for item '{external_id}' in run with ID '{run_id}'.")
     except NotFoundException:
-        logger.warning("Run with ID '%s' or item '%s' not found.", run_id, external_id)
+        logger.warning(f"Run with ID '{run_id}' or item '{external_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' or item '{external_id}' not found.")
         sys.exit(2)
     except ValueError as e:
@@ -1047,7 +1047,7 @@ def result_download(  # noqa: C901, PLR0913, PLR0915, PLR0917
     ] = False,
 ) -> None:
     """Download results of a run."""
-    logger.debug(
+    logger.trace(
         "Downloading results for run with ID '%s' to '%s' with options: "
         "create_subdirectory_for_run=%s, create_subdirectory_per_item=%s, wait_for_completion=%s, qupath_project=%r",
         run_id,
@@ -1197,18 +1197,18 @@ def result_download(  # noqa: C901, PLR0913, PLR0915, PLR0917
             main_download_progress_ui.update(main_task, completed=100, total=100)
 
         message = f"Downloaded results of run '{run_id}' to '{destination_directory}'"
-        logger.info(message)
+        logger.debug(message)
         console.print(message, style="info")
     except NotFoundException as e:
-        logger.warning("Run with ID '%s' not found: %s", run_id, e)
+        logger.warning(f"Run with ID '{run_id}' not found: {e}")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
         sys.exit(2)
     except ValueError as e:
-        logger.warning("Bad input to download results of run with ID '%s': %s", run_id, e)
+        logger.warning(f"Bad input to download results of run with ID '{run_id}': {e}")
         console.print(f"[warning]Warning:[/warning] Bad input to download results of run with ID '{run_id}': {e}")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to download results of run with ID '%s'", run_id)
+        logger.exception(f"Failed to download results of run with ID '{run_id}'")
         console.print(
             f"[error]Error:[/error] Failed to download results of run with ID '{run_id}': {type(e).__name__}: {e}"
         )
@@ -1220,17 +1220,17 @@ def result_delete(
     run_id: Annotated[str, typer.Argument(..., help="Id of the run to delete results for")],
 ) -> None:
     """Delete results of run."""
-    logger.debug("Deleting results for run with ID '%s'", run_id)
+    logger.trace("Deleting results for run with ID '{}'", run_id)
 
     try:
         Service().application_run_delete(run_id)
-        logger.info("Deleted run with ID '%s'.", run_id)
+        logger.debug("Deleted run with ID '{}'.", run_id)
         console.print(f"Results for run with ID '{run_id}' have been deleted.")
     except NotFoundException:
-        logger.warning("Results for with ID '%s' not found.", run_id)
+        logger.warning(f"Results for with ID '{run_id}' not found.")
         console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
         sys.exit(2)
     except Exception as e:
-        logger.exception("Failed to delete run with ID '%s'", run_id)
+        logger.exception(f"Failed to delete run with ID '{run_id}'")
         console.print(f"[bold red]Error:[/bold red] Failed to delete results for with ID '{run_id}': {e}")
         sys.exit(1)