aignostics 0.2.142__tar.gz → 0.2.146__tar.gz

{aignostics-0.2.142 → aignostics-0.2.146}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aignostics
-Version: 0.2.142
+Version: 0.2.146
 Summary: 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
 Project-URL: Homepage, https://aignostics.readthedocs.io/en/latest/
 Project-URL: Documentation, https://aignostics.readthedocs.io/en/latest/
@@ -48,8 +48,7 @@ Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Classifier: Typing :: Typed
 Requires-Python: <4.0,>=3.11
-Requires-Dist: appdirs>=1.4.4
-Requires-Dist: boto3>=1.40.10
+Requires-Dist: boto3>=1.40.11
 Requires-Dist: certifi>=2025.8.3
 Requires-Dist: dicom-validator>=0.7.1
 Requires-Dist: dicomweb-client[gcp]>=0.59.2

{aignostics-0.2.142 → aignostics-0.2.146}/examples/notebook.py

@@ -2,7 +2,7 @@
 # requires-python = ">=3.13"
 # dependencies = [
 #     "marimo",
-#     "aignostics==0.2.142",
+#     "aignostics==0.2.146",
 # ]
 # ///
 

{aignostics-0.2.142 → aignostics-0.2.146}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "aignostics"
-version = "0.2.142"
+version = "0.2.146"
 description = "🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library."
 readme = "README.md"
 authors = [
@@ -96,8 +96,8 @@ dependencies = [
     "typer>=0.16.0",
     "uptime>=3.0.1",
     # Custom
-    "appdirs>=1.4.4",
-    "boto3>=1.40.10",
+    "platformdirs>=4.3.8",
+    "boto3>=1.40.11",
     "certifi>=2025.8.3",
     "dicom-validator>=0.7.1",
     "dicomweb-client[gcp]>=0.59.2",
@@ -358,7 +358,7 @@ source = ["src/"]
 
 
 [tool.bumpversion]
-current_version = "0.2.142"
+current_version = "0.2.146"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
 serialize = ["{major}.{minor}.{patch}"]
 search = "{current_version}"

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/application/_cli.py

@@ -819,9 +819,22 @@ def result_download(  # noqa: PLR0913, PLR0917
         sys.exit(1)
 
 
-# TODO(Helmut): Implement result delete when available in platform
-@result_app.command("delete")
-def result_delete() -> None:
-    """Delete results of a run."""
-    console.print(MESSAGE_NOT_YET_IMPLEMENTED)
-    sys.exit(1)
+@run_app.command("delete")
+def run_delete(
+    run_id: Annotated[str, typer.Argument(..., help="Id of the run to delete")],
+) -> None:
+    """Delete run."""
+    logger.debug("Deleting run with ID '%s'", run_id)
+
+    try:
+        Service().application_run_delete(run_id)
+        logger.info("Deleted run with ID '%s'.", run_id)
+        console.print(f"Run with ID '{run_id}' has been deleted.")
+    except NotFoundException:
+        logger.warning("Run with ID '%s' not found.", run_id)
+        console.print(f"[warning]Warning:[/warning] Run with ID '{run_id}' not found.")
+        sys.exit(2)
+    except Exception as e:
+        logger.exception("Failed to delete run with ID '%s'", run_id)
+        console.print(f"[bold red]Error:[/bold red] Failed to delete run with ID '{run_id}': {e}")
+        sys.exit(1)

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/application/_gui/_page_application_run_describe.py

@@ -97,6 +97,30 @@ async def _page_application_run_describe(application_run_id: str) -> None:  # no
             ui.notify(f"Failed to cancel application run: {e}.", type="warning")
             return False
 
+    async def _delete(run_id: str) -> bool:
+        """Delete the application run and navigate to the main page.
+
+        Args:
+            run_id (str): The ID of the run to cancel.
+
+        Returns:
+            bool: True if the run was cancelled, False otherwise.
+        """
+        ui.notify(f"Deleting application run with id '{run_id}' ...", type="info")
+        try:
+            delete_button.disable()
+            delete_button.props(add="loading")
+            await nicegui_run.io_bound(service.application_run_delete, run_id)
+            delete_button.props(remove="loading")
+            ui.navigate.to("/")
+            ui.notify("Application run deleted!", type="positive")
+            return True
+        except Exception as e:  # noqa: BLE001
+            delete_button.enable()
+            delete_button.props(remove="loading")
+            ui.notify(f"Failed to delete application run: {e}.", type="warning")
+            return False
+
     @ui.refreshable
     def download_run_dialog_content(qupath_project: bool = False, marimo: bool = False) -> None:  # noqa: C901, PLR0915
         if qupath_project:
@@ -407,14 +431,15 @@ async def _page_application_run_describe(application_run_id: str) -> None:  # no
     if run_data:  # noqa: PLR1702
         with ui.row().classes("w-full justify-center"):
             with ui.expansion(text=f"Run {run.application_run_id}"):
-                ui.markdown(
+                ui.code(
                     f"""
                     * Run ID: {run_data.application_run_id}
                     * Application Version: {run_data.application_version_id}
                     * Triggered On: {run_data.triggered_at.astimezone().strftime("%m-%d %H:%M")}
                     * Triggered by: {run_data.triggered_by}
                     * Organization: {run_data.organization_id}
-                    """
+                    """,
+                    language="markdown",
                 )
             ui.space()
             with ui.row().classes("justify-end"):
@@ -448,6 +473,7 @@ async def _page_application_run_describe(application_run_id: str) -> None:  # no
                                 .props("push")
                             ):
                                 ui.tooltip("Open results in Python Notebook served by Marimo")
+
                 if run_data.status.value == ApplicationRunStatus.RUNNING:
                     cancel_button = ui.button(
                         "Cancel",
@@ -456,6 +482,22 @@ async def _page_application_run_describe(application_run_id: str) -> None:  # no
                         icon="cancel",
                     ).mark("BUTTON_APPLICATION_RUN_CANCEL")
 
+                if run_data.status.value in {
+                    ApplicationRunStatus.CANCELED_USER,
+                    ApplicationRunStatus.CANCELED_SYSTEM,
+                    ApplicationRunStatus.COMPLETED,
+                    ApplicationRunStatus.COMPLETED_WITH_ERROR,
+                    ApplicationRunStatus.REJECTED,
+                    ApplicationRunStatus.RUNNING,
+                    ApplicationRunStatus.SCHEDULED,
+                }:
+                    delete_button = ui.button(
+                        "Delete",
+                        color="red",
+                        on_click=lambda: _delete(run.application_run_id),
+                        icon="delete",
+                    ).mark("BUTTON_APPLICATION_RUN_DELETE")
+
         with ui.list().classes("full-width"):
             results = list(run.results())
             if not results:

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/application/_service.py

@@ -775,7 +775,7 @@ class Service(BaseService):
 
         Raises:
             NotFoundException: If the application run with the given ID is not found.
-            ValueError: If the run ID is invalid or the run cannot be canceled given its current status.
+            ValueError: If the run ID is invalid or the run cannot be canceled given its current state.
             RuntimeError: If canceling the run fails unexpectedly.
         """
         try:
@@ -793,6 +793,37 @@ class Service(BaseService):
             logger.exception(message)
             raise RuntimeError(message) from e
 
+    def application_run_delete(self, run_id: str) -> None:
+        """Delete a run by its ID.
+
+        Args:
+            run_id: The ID of the run to delete
+
+        Raises:
+            Exception: If the client cannot be created.
+
+        Raises:
+            NotFoundException: If the application run with the given ID is not found.
+            ValueError: If the run ID is invalid or the run cannot be deleted given its current state.
+            RuntimeError: If deleting the run fails unexpectedly.
+        """
+        try:
+            logger.debug("Deleting application run with ID '%s'", run_id)
+            self.application_run(run_id).delete()
+            logger.debug("Deleted application run with ID '%s'", run_id)
+        except ValueError as e:
+            message = f"Failed to delete application run with ID '{run_id}': ValueError {e}"
+            logger.warning(message)
+            raise ValueError(message) from e
+        except NotFoundException as e:
+            message = f"Application run with ID '{run_id}' not found: {e}"
+            logger.warning(message)
+            raise NotFoundException(message) from e
+        except Exception as e:
+            message = f"Failed to delete application run with ID '{run_id}': {e}"
+            logger.exception(message)
+            raise RuntimeError(message) from e
+
     @staticmethod
     def application_run_download_static(  # noqa: PLR0913, PLR0917
         run_id: str,

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/dataset/_service.py

@@ -10,7 +10,7 @@ from multiprocessing import Queue
 from pathlib import Path
 from typing import Any
 
-from aignostics.utils import BaseService, Health, get_logger
+from aignostics.utils import SUBPROCESS_CREATION_FLAGS, BaseService, Health, get_logger
 
 logger = get_logger(__name__)
 
@@ -248,6 +248,7 @@ client.download_from_selection(
                     stderr=subprocess.PIPE,
                     text=True,
                     bufsize=1,
+                    creationflags=SUBPROCESS_CREATION_FLAGS,
                 )
             else:
                 logger.debug(
@@ -259,6 +260,7 @@ client.download_from_selection(
                     stderr=subprocess.PIPE,
                     text=True,
                     bufsize=1,
+                    creationflags=SUBPROCESS_CREATION_FLAGS,
                 )
 
             # Register process for cleanup

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/gui/_frame.py

@@ -2,6 +2,7 @@
 
 import contextlib
 import platform
+import sys
 from collections.abc import Generator
 from contextlib import contextmanager
 from importlib.util import find_spec
@@ -307,9 +308,10 @@ def frame(  # noqa: C901, PLR0915
             ui.tooltip("Check Platform Status")
         ui.space()
         with ui.row():
+            flavor = " (native)" if getattr(sys, "frozen", False) else ""
             ui.html(
                 '🔬<a style="color: black; text-decoration: underline" target="_blank" href="https://github.com/aignostics/python-sdk/">'
-                f"Aignostics Python SDK v{__version__}</a>"
+                f"Aignostics Python SDK v{__version__}{flavor}</a>"
                 ' - built with love in <a style="color: black; text-decoration: underline" target="_blank"'
                 ' href="https://www.aignostics.com/company/about">Berlin</A> 🐻'
             ).style("color: black")

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/notebook/_service.py

@@ -8,7 +8,7 @@ from threading import Event, Thread
 from typing import Any
 
 from aignostics.constants import NOTEBOOK_DEFAULT
-from aignostics.utils import BaseService, Health, get_logger, get_user_data_directory
+from aignostics.utils import SUBPROCESS_CREATION_FLAGS, BaseService, Health, get_logger, get_user_data_directory
 
 logger = get_logger(__name__)
 
@@ -104,6 +104,7 @@ class _Runner:
                 encoding="utf-8",
                 errors="replace",
                 bufsize=1,
+                creationflags=SUBPROCESS_CREATION_FLAGS,
             )
         else:
             self._marimo_server = Popen(  # noqa: S603
@@ -124,6 +125,7 @@ class _Runner:
                 encoding="utf-8",
                 errors="replace",
                 bufsize=1,
+                creationflags=SUBPROCESS_CREATION_FLAGS,
             )
 
         # Start a thread to monitor the subprocess output

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/platform/_settings.py

@@ -6,7 +6,7 @@ from pathlib import Path
 from typing import Annotated, TypeVar
 from urllib.parse import urlparse
 
-import appdirs
+import platformdirs
 from pydantic import (
     Field,
     FieldSerializationInfo,
@@ -180,7 +180,7 @@ class Settings(OpaqueSettings):
         Field(description="Refresh token for OAuth authentication", min_length=10, max_length=1000, default=None),
     ] = None
 
-    cache_dir: str = appdirs.user_cache_dir(__project_name__)
+    cache_dir: str = platformdirs.user_cache_dir(__project_name__)
 
     @computed_field  # type: ignore[prop-decorator]
     @property

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/platform/resources/runs.py

@@ -114,6 +114,14 @@ class ApplicationRun:
         """
         self._api.cancel_application_run_v1_runs_application_run_id_cancel_post(self.application_run_id)
 
+    def delete(self) -> None:
+        """Delete the application run.
+
+        Raises:
+            Exception: If the API request fails.
+        """
+        self._api.delete_application_run_results_v1_runs_application_run_id_results_delete(self.application_run_id)
+
     def results(self) -> t.Iterator[ItemResultData]:
         """Retrieves the results of all items in the run.
 

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/qupath/_service.py

@@ -17,15 +17,22 @@ from pathlib import Path
 from typing import Any
 from urllib.parse import urlparse, urlsplit
 
-import appdirs
 import ijson
+import platformdirs
 import psutil
 import requests
 from packaging.version import Version
 from psutil import Process, wait_procs
 from pydantic import BaseModel, computed_field
 
-from aignostics.utils import UNHIDE_SENSITIVE_INFO, BaseService, Health, __project_name__, get_logger
+from aignostics.utils import (
+    SUBPROCESS_CREATION_FLAGS,
+    UNHIDE_SENSITIVE_INFO,
+    BaseService,
+    Health,
+    __project_name__,
+    get_logger,
+)
 
 from ._settings import Settings
 
@@ -333,6 +340,7 @@ class Service(BaseService):
                 text=True,
                 check=True,
                 timeout=QUPATH_LAUNCH_MAX_WAIT_TIME,
+                creationflags=SUBPROCESS_CREATION_FLAGS,
             )
 
             output = result.stdout.strip()
@@ -449,7 +457,7 @@ class Service(BaseService):
         Returns:
             Path: The directory QuPath will be installed into.
         """
-        return Path(appdirs.user_data_dir(__project_name__)).resolve()
+        return Path(platformdirs.user_data_dir(__project_name__)).resolve()
 
     @staticmethod
     def _download_qupath(  # noqa: C901, PLR0912, PLR0913, PLR0915, PLR0917
@@ -702,6 +710,7 @@ class Service(BaseService):
                         command,
                         capture_output=True,
                         check=True,
+                        creationflags=SUBPROCESS_CREATION_FLAGS,
                     )
                 except subprocess.CalledProcessError as e:
                     stderr_output = e.stderr.decode("utf-8", errors="replace") if e.stderr else ""
@@ -735,6 +744,7 @@ class Service(BaseService):
                         command,
                         capture_output=True,
                         check=True,
+                        creationflags=SUBPROCESS_CREATION_FLAGS,
                     )
                 except subprocess.CalledProcessError as e:
                     stderr_output = e.stderr.decode("utf-8", errors="replace") if e.stderr else ""

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/third_party/idc_index.py

@@ -52,7 +52,7 @@ import requests
 from packaging.version import Version
 from tqdm import tqdm
 
-from aignostics.utils import get_logger
+from aignostics.utils import get_logger, SUBPROCESS_CREATION_FLAGS
 
 aws_endpoint_url = "https://s3.amazonaws.com"
 gcp_endpoint_url = "https://storage.googleapis.com"
@@ -427,6 +427,7 @@ class IDCClient:
                 capture_output=True,
                 text=True,
                 check=True,
+                creationflags=SUBPROCESS_CREATION_FLAGS,
             )
             if result.stderr and result.stdout.startswith("ERROR"):
                 logger.error("Failed to download IDC clinical data.")
@@ -712,6 +713,7 @@ class IDCClient:
             ],
             stdout=subprocess.PIPE,
             check=False,
+            creationflags=SUBPROCESS_CREATION_FLAGS,
         )
         output = result.stdout.decode("utf-8")
 
@@ -1135,7 +1137,8 @@ class IDCClient:
                         merged_df.s3_url.values[0],
                     ]
                     process = subprocess.run(
-                        cmd, capture_output=True, text=True, check=False
+                        cmd, capture_output=True, text=True, check=False,
+                        creationflags=SUBPROCESS_CREATION_FLAGS,
                     )
                     if process.stderr and process.stdout.startswith("ERROR"):
                         logger.debug(
@@ -1473,7 +1476,8 @@ class IDCClient:
             ]
 
             process = subprocess.run(
-                dry_run_cmd, stdout=subprocess.PIPE, text=True, check=False
+                dry_run_cmd, stdout=subprocess.PIPE, text=True, check=False,
+                creationflags=SUBPROCESS_CREATION_FLAGS,
             )
 
             if process.stdout:

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/utils/__init__.py

@@ -21,12 +21,13 @@ from ._di import load_modules, locate_implementations, locate_subclasses
 from ._fs import get_user_data_directory, open_user_data_directory, sanitize_path, sanitize_path_component
 from ._health import Health
 from ._log import LogSettings, get_logger
-from ._process import ProcessInfo, get_process_info
+from ._process import SUBPROCESS_CREATION_FLAGS, ProcessInfo, get_process_info
 from ._service import BaseService
 from ._settings import UNHIDE_SENSITIVE_INFO, OpaqueSettings, load_settings, strip_to_none_before_validator
 from .boot import boot
 
 __all__ = [
+    "SUBPROCESS_CREATION_FLAGS",
     "UNHIDE_SENSITIVE_INFO",
     "BaseService",
     "Health",

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/utils/_fs.py

@@ -3,7 +3,7 @@
 import platform
 from pathlib import Path, PureWindowsPath
 
-import appdirs
+import platformdirs
 from showinfm.showinfm import show_in_file_manager
 
 from ._constants import __is_running_in_read_only_environment__, __project_name__
@@ -89,7 +89,7 @@ def get_user_data_directory(scope: str | None = None) -> Path:
     Returns:
         Path: The data directory path.
     """
-    directory = Path(appdirs.user_data_dir(__project_name__))
+    directory = Path(platformdirs.user_data_dir(__project_name__))
     if scope:
         directory /= scope
     if not __is_running_in_read_only_environment__:

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/utils/_gui.py

@@ -9,7 +9,7 @@ from ._log import get_logger
 
 logger = get_logger(__name__)
 
-WINDOW_SIZE = (1200, 768)  # Default window size for the GUI
+WINDOW_SIZE = (1280, 768)  # Default window size for the GUI
 
 
 class BasePageBuilder(ABC):

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/utils/_log.py

@@ -8,8 +8,8 @@ from logging import Handler
 from pathlib import Path
 from typing import Annotated, Literal
 
-import appdirs
 import click
+import platformdirs
 from pydantic import Field, ValidationInfo, field_validator
 from pydantic_settings import BaseSettings, SettingsConfigDict
 from rich.console import Console
@@ -100,7 +100,7 @@ class LogSettings(BaseSettings):
             description="Name of the log file",
             default="/dev/stdout"
             if __is_running_in_read_only_environment__
-            else appdirs.user_data_dir(__project_name__) + f"/{__project_name__}.log",
+            else platformdirs.user_data_dir(__project_name__) + f"/{__project_name__}.log",
         ),
     ]
     console_enabled: Annotated[

{aignostics-0.2.142 → aignostics-0.2.146}/src/aignostics/utils/_process.py

@@ -1,9 +1,12 @@
 """Process related utilities."""
 
+import subprocess
 from pathlib import Path
 
 from pydantic import BaseModel
 
+SUBPROCESS_CREATION_FLAGS = getattr(subprocess, "CREATE_NO_WINDOW", 0)
+
 
 class ParentProcessInfo(BaseModel):
     """Information about a parent process."""