aignostics 0.2.138__tar.gz → 0.2.142__tar.gz

{aignostics-0.2.138 → aignostics-0.2.142}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aignostics
-Version: 0.2.138
+Version: 0.2.142
 Summary: 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
 Project-URL: Homepage, https://aignostics.readthedocs.io/en/latest/
 Project-URL: Documentation, https://aignostics.readthedocs.io/en/latest/
@@ -49,7 +49,7 @@ Classifier: Programming Language :: Python :: 3.13
 Classifier: Typing :: Typed
 Requires-Python: <4.0,>=3.11
 Requires-Dist: appdirs>=1.4.4
-Requires-Dist: boto3>=1.40.8
+Requires-Dist: boto3>=1.40.10
 Requires-Dist: certifi>=2025.8.3
 Requires-Dist: dicom-validator>=0.7.1
 Requires-Dist: dicomweb-client[gcp]>=0.59.2
@@ -90,7 +90,7 @@ Requires-Dist: requests-oauthlib>=2.0.0
 Requires-Dist: requests>=2.32.3
 Requires-Dist: s5cmd>=0.2.0
 Requires-Dist: semver>=3.0.4
-Requires-Dist: sentry-sdk>=2.33.0
+Requires-Dist: sentry-sdk>=2.35.0
 Requires-Dist: shapely>=2.1.1
 Requires-Dist: show-in-file-manager>=1.1.5
 Requires-Dist: tqdm>=4.67.1
@@ -102,6 +102,7 @@ Provides-Extra: jupyter
 Requires-Dist: jupyter>=1.1.1; extra == 'jupyter'
 Provides-Extra: marimo
 Requires-Dist: cloudpathlib>=0.21.1; extra == 'marimo'
+Requires-Dist: ipython>=9.4.0; extra == 'marimo'
 Requires-Dist: marimo>=0.14.17; extra == 'marimo'
 Requires-Dist: matplotlib>=3.10.3; extra == 'marimo'
 Requires-Dist: shapely>=2.1.0; extra == 'marimo'

{aignostics-0.2.138 → aignostics-0.2.142}/examples/notebook.py

@@ -2,7 +2,7 @@
 # requires-python = ">=3.13"
 # dependencies = [
 #     "marimo",
-#     "aignostics==0.2.138",
+#     "aignostics==0.2.142",
 # ]
 # ///
 

{aignostics-0.2.138 → aignostics-0.2.142}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "aignostics"
-version = "0.2.138"
+version = "0.2.142"
 description = "🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library."
 readme = "README.md"
 authors = [
@@ -92,12 +92,12 @@ dependencies = [
     "pydantic-settings>=2.10.1",
     "pywin32>=310 ; sys_platform == 'win32'",
     "pyyaml>=6.0",
-    "sentry-sdk>=2.33.0",
+    "sentry-sdk>=2.35.0",
     "typer>=0.16.0",
     "uptime>=3.0.1",
     # Custom
     "appdirs>=1.4.4",
-    "boto3>=1.40.8",
+    "boto3>=1.40.10",
     "certifi>=2025.8.3",
     "dicom-validator>=0.7.1",
     "dicomweb-client[gcp]>=0.59.2",
@@ -133,6 +133,7 @@ pyinstaller = ["pyinstaller>=6.14.0"]
 jupyter = ["jupyter>=1.1.1"]
 marimo = [
     "cloudpathlib>=0.21.1",
+    "ipython>=9.4.0",
     "marimo>=0.14.17",
     "matplotlib>=3.10.3",
     "shapely>=2.1.0",
@@ -159,14 +160,14 @@ dev = [
     "pytest-docker>=3.2.3",
     "pytest-env>=1.1.5",
     "pytest-md-report>=0.7.0",
-    "pytest-regressions>=2.8.1",
+    "pytest-regressions>=2.8.2",
     "pytest-retry>=1.7.0",
     "pytest-selenium>=4.1.0",
     "pytest-subprocess>=1.5.3",
     "pytest-timeout>=2.4.0",
     "pytest-watcher>=0.4.3",
     "pytest-xdist[psutil]>=3.8.0",
-    "ruff>=0.12.8",
+    "ruff>=0.12.9",
     "scalene>=1.5.53",
     "sphinx>=8.2.3",
     "sphinx-autobuild>=2024.10.3",
@@ -357,7 +358,7 @@ source = ["src/"]
 
 
 [tool.bumpversion]
-current_version = "0.2.138"
+current_version = "0.2.142"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
 serialize = ["{major}.{minor}.{patch}"]
 search = "{current_version}"

{aignostics-0.2.138 → aignostics-0.2.142}/src/aignostics/notebook/_service.py

@@ -84,25 +84,47 @@ class _Runner:
         self._server_ready.clear()
 
         logger.debug("Starting Marimo server with notebook at '%s'...", notebook_path)
-        self._marimo_server = Popen(  # noqa: S603
-            [
-                sys.executable,
-                "-m",
-                "marimo",
-                "edit",
-                "--headless",
-                "--skip-update-check",
-                "--no-sandbox",
-                "--no-token",
-                str(notebook_path.resolve()),
-            ],
-            stdout=PIPE,
-            stderr=STDOUT,
-            text=True,
-            encoding="utf-8",
-            errors="replace",
-            bufsize=1,
-        )
+
+        if getattr(sys, "frozen", False):
+            self._marimo_server = Popen(  # noqa: S603
+                [
+                    sys.executable,
+                    "--run-module",
+                    "marimo",
+                    "edit",
+                    "--headless",
+                    "--skip-update-check",
+                    "--no-sandbox",
+                    "--no-token",
+                    str(notebook_path.resolve()),
+                ],
+                stdout=PIPE,
+                stderr=STDOUT,
+                text=True,
+                encoding="utf-8",
+                errors="replace",
+                bufsize=1,
+            )
+        else:
+            self._marimo_server = Popen(  # noqa: S603
+                [
+                    sys.executable,
+                    "-m",
+                    "marimo",
+                    "edit",
+                    "--headless",
+                    "--skip-update-check",
+                    "--no-sandbox",
+                    "--no-token",
+                    str(notebook_path.resolve()),
+                ],
+                stdout=PIPE,
+                stderr=STDOUT,
+                text=True,
+                encoding="utf-8",
+                errors="replace",
+                bufsize=1,
+            )
 
         # Start a thread to monitor the subprocess output
         self._monitor_thread = Thread(target=self._capture_output, args=(self._marimo_server,), daemon=True)

{aignostics-0.2.138 → aignostics-0.2.142}/src/aignostics/utils/boot.py

@@ -1,13 +1,19 @@
 """Boot sequence."""
 
 import os
+import ssl
 import sys
 from pathlib import Path
 
+import certifi
+
 from ._log import logging_initialize
 
 _boot_called = False
 
+if ssl.get_default_verify_paths().cafile is None and os.environ.get("SSL_CERT_FILE") is None:
+    os.environ["SSL_CERT_FILE"] = certifi.where()
+
 # Import third party dependencies
 third_party_dir = Path(__file__).parent.absolute() / ".." / "third_party"
 if third_party_dir.is_dir() and str(third_party_dir) not in sys.path:

{aignostics-0.2.138 → aignostics-0.2.142}/src/aignostics.py

@@ -5,16 +5,8 @@ import ssl
 import sys
 from multiprocessing import freeze_support
 
-import certifi
-
 freeze_support()
 
-# Use bundled bundled certifi certificate bundle IF cafile could not be found by openssl.
-if ssl.get_default_verify_paths().cafile is None:
-    os.environ["SSL_CERT_FILE"] = certifi.where()
-
-# See https://github.com/pyinstaller/pyinstaller/issues/7229
-
 os.environ["LOGFIRE_PYDANTIC_RECORD"] = "off"
 
 from aignostics.constants import MODULES_TO_INSTRUMENT  # noqa: E402
@@ -26,6 +18,8 @@ logger = get_logger(__name__)
 # Constants for command line argument handling
 EXEC_SCRIPT_FLAG = "--exec-script"
 MIN_ARGS_FOR_SCRIPT = 3  # program name, flag, and script content
+MODULE_FLAG = "--run-module"
+MIN_ARGS_FOR_MODULE = 3  # program name, flag, and module name
 
 DEBUG_FLAG = "--debug"
 
@@ -42,6 +36,33 @@ if len(sys.argv) > 1 and sys.argv[1] == EXEC_SCRIPT_FLAG:
     else:
         logger.error("No script content provided")
         sys.exit(1)
+elif len(sys.argv) > 1 and sys.argv[1] == MODULE_FLAG:
+    # Execute the module passed as the second argument
+    if len(sys.argv) >= MIN_ARGS_FOR_MODULE:
+        module_name = sys.argv[2]
+        # Build the command to run the module with remaining arguments
+        module_args = sys.argv[MIN_ARGS_FOR_MODULE:] if len(sys.argv) > MIN_ARGS_FOR_MODULE else []
+
+        # We're running as a packaged executable, run module directly
+        # Update sys.argv to what the module expects
+        sys.argv = [module_name, *module_args]
+        try:
+            if module_name == "marimo":
+                # Special handling for marimo - importing from private module as marimo's __main__.py does
+                from marimo._cli.cli import main  # noqa: PLC2701
+
+                main(prog_name="marimo")
+            else:
+                # Generic module execution
+                import runpy
+
+                runpy.run_module(module_name, run_name="__main__")
+        except Exception:
+            logger.exception("Failed to execute module '%s'", module_name)
+            sys.exit(1)
+    else:
+        logger.error("No module name provided")
+        sys.exit(1)
 elif len(sys.argv) > 1 and sys.argv[1] == DEBUG_FLAG:
     import ssl