aignostics 0.2.128__tar.gz → 0.2.129__tar.gz

{aignostics-0.2.128 → aignostics-0.2.129}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aignostics
-Version: 0.2.128
+Version: 0.2.129
 Summary: 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
 Project-URL: Homepage, https://aignostics.readthedocs.io/en/latest/
 Project-URL: Documentation, https://aignostics.readthedocs.io/en/latest/
@@ -49,7 +49,7 @@ Classifier: Programming Language :: Python :: 3.13
 Classifier: Typing :: Typed
 Requires-Python: <4.0,>=3.11
 Requires-Dist: appdirs>=1.4.4
-Requires-Dist: boto3>=1.40.6
+Requires-Dist: boto3>=1.40.7
 Requires-Dist: dicom-validator>=0.7.1
 Requires-Dist: dicomweb-client[gcp]>=0.59.2
 Requires-Dist: duckdb<=1.4.0,>=0.10.0
@@ -65,7 +65,7 @@ Requires-Dist: ijson>=3.4.0
 Requires-Dist: jsf>=0.11.2
 Requires-Dist: jsonschema>=4.24.1
 Requires-Dist: logfire[system-metrics]>=4.2.0
-Requires-Dist: nicegui[native]>=2.22.1
+Requires-Dist: nicegui[native]>=2.22.2
 Requires-Dist: openslide-bin>=4.0.0.8
 Requires-Dist: openslide-python>=1.4.2
 Requires-Dist: opentelemetry-instrumentation-fastapi>=0.53b0
@@ -78,6 +78,7 @@ Requires-Dist: opentelemetry-instrumentation-urllib3>=0.53b0
 Requires-Dist: opentelemetry-instrumentation-urllib>=0.53b0
 Requires-Dist: packaging>=25.0
 Requires-Dist: pandas<=2.3.1
+Requires-Dist: pip-system-certs>=5.2
 Requires-Dist: platformdirs>=4.3.8
 Requires-Dist: psutil>=7.0.0
 Requires-Dist: pydantic-settings>=2.10.1
@@ -101,7 +102,7 @@ Provides-Extra: jupyter
 Requires-Dist: jupyter>=1.1.1; extra == 'jupyter'
 Provides-Extra: marimo
 Requires-Dist: cloudpathlib>=0.21.1; extra == 'marimo'
-Requires-Dist: marimo>=0.14.11; extra == 'marimo'
+Requires-Dist: marimo>=0.14.17; extra == 'marimo'
 Requires-Dist: matplotlib>=3.10.3; extra == 'marimo'
 Requires-Dist: shapely>=2.1.0; extra == 'marimo'
 Provides-Extra: pyinstaller

{aignostics-0.2.128 → aignostics-0.2.129}/examples/notebook.py

@@ -2,7 +2,7 @@
 # requires-python = ">=3.13"
 # dependencies = [
 #     "marimo",
-#     "aignostics==0.2.128",
+#     "aignostics==0.2.129",
 # ]
 # ///
 

{aignostics-0.2.128 → aignostics-0.2.129}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "aignostics"
-version = "0.2.128"
+version = "0.2.129"
 description = "🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library."
 readme = "README.md"
 authors = [
@@ -77,7 +77,7 @@ dependencies = [
     "fastapi[standard,all]>=0.116.1",
     "humanize>=4.12.3",
     "logfire[system-metrics]>=4.2.0",
-    "nicegui[native]>=2.22.1",
+    "nicegui[native]>=2.22.2",
     "opentelemetry-instrumentation-fastapi>=0.53b0",
     "opentelemetry-instrumentation-httpx>=0.53b0",
     "opentelemetry-instrumentation-jinja2>=0.53b0",
@@ -97,7 +97,7 @@ dependencies = [
     "uptime>=3.0.1",
     # Custom
     "appdirs>=1.4.4",
-    "boto3>=1.40.6",
+    "boto3>=1.40.7",
     "dicom-validator>=0.7.1",
     "dicomweb-client[gcp]>=0.59.2",
     "duckdb>=0.10.0,<=1.4.0",
@@ -125,6 +125,7 @@ dependencies = [
     "tqdm>=4.67.1",
     "urllib3>=2.5.0",
     "wsidicom>=0.27.1",
+    "pip-system-certs>=5.2",
 ]
 
 [project.optional-dependencies]
@@ -132,7 +133,7 @@ pyinstaller = ["pyinstaller>=6.14.0"]
 jupyter = ["jupyter>=1.1.1"]
 marimo = [
     "cloudpathlib>=0.21.1",
-    "marimo>=0.14.11",
+    "marimo>=0.14.17",
     "matplotlib>=3.10.3",
     "shapely>=2.1.0",
 ]
@@ -356,7 +357,7 @@ source = ["src/"]
 
 
 [tool.bumpversion]
-current_version = "0.2.128"
+current_version = "0.2.129"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
 serialize = ["{major}.{minor}.{patch}"]
 search = "{current_version}"

{aignostics-0.2.128 → aignostics-0.2.129}/src/aignostics/dataset/_service.py

@@ -155,7 +155,7 @@ class Service(BaseService):
         logger.debug("Process completed, setting progress to 100%")
 
     @staticmethod
-    def download_with_queue(  # noqa: PLR0915
+    def download_with_queue(  # noqa: PLR0915, C901
         queue: Queue,  # type: ignore[type-arg]
         source: str,
         target: str = str(Path.cwd()),
@@ -237,16 +237,29 @@ client.download_from_selection(
 """
 
             # Run the download in a subprocess
-            logger.debug(
-                "Starting download subprocess with executable '%s' and script:\n%s", sys.executable, script_content
-            )
-            process = subprocess.Popen(  # noqa: S603
-                [sys.executable, "-c", script_content],
-                stdout=subprocess.PIPE,
-                stderr=subprocess.PIPE,
-                text=True,
-                bufsize=1,
-            )
+            if getattr(sys, "frozen", False):
+                # When running under PyInstaller, sys.executable points to the PyInstaller executable.
+                # We use a special flag to execute the script without launching the GUI.
+                # See src/aignostics.py
+                logger.debug("Running under PyInstaller - using --exec-script flag")
+                process = subprocess.Popen(  # noqa: S603
+                    [sys.executable, "--exec-script", script_content],
+                    stdout=subprocess.PIPE,
+                    stderr=subprocess.PIPE,
+                    text=True,
+                    bufsize=1,
+                )
+            else:
+                logger.debug(
+                    "Starting download subprocess with executable '%s' and script:\n%s", sys.executable, script_content
+                )
+                process = subprocess.Popen(  # noqa: S603
+                    [sys.executable, "-c", script_content],
+                    stdout=subprocess.PIPE,
+                    stderr=subprocess.PIPE,
+                    text=True,
+                    bufsize=1,
+                )
 
             # Register process for cleanup
             _active_processes.append(process)

aignostics-0.2.129/src/aignostics.py

@@ -0,0 +1,36 @@
+"""Aignostics Launchpad launcher for pyinstaller."""
+
+import os
+import sys
+from multiprocessing import freeze_support
+
+freeze_support()
+
+os.environ["LOGFIRE_PYDANTIC_RECORD"] = "off"
+
+from aignostics.constants import MODULES_TO_INSTRUMENT  # noqa: E402
+from aignostics.utils import boot, get_logger, gui_run  # noqa: E402
+
+boot(MODULES_TO_INSTRUMENT)
+logger = get_logger(__name__)
+
+# Constants for command line argument handling
+EXEC_SCRIPT_FLAG = "--exec-script"
+MIN_ARGS_FOR_SCRIPT = 3  # program name, flag, and script content
+
+# Check if we should execute a script instead of launching the GUI
+if len(sys.argv) > 1 and sys.argv[1] == EXEC_SCRIPT_FLAG:
+    # Execute the script passed as the second argument
+    if len(sys.argv) >= MIN_ARGS_FOR_SCRIPT:
+        script_content = sys.argv[2]
+        try:
+            exec(script_content)  # noqa: S102
+        except Exception:
+            logger.exception("Failed to execute script")
+            sys.exit(1)
+    else:
+        logger.error("No script content provided")
+        sys.exit(1)
+else:
+    # Normal GUI launch
+    gui_run(native=True, with_api=False, title="Aignostics Launchpad", icon="🔬")

aignostics-0.2.128/src/aignostics.py

@@ -1,16 +0,0 @@
-"""Aignostics Launchpad launcher for pyinstaller."""
-
-import os
-from multiprocessing import freeze_support
-
-freeze_support()
-
-os.environ["LOGFIRE_PYDANTIC_RECORD"] = "off"
-
-from aignostics.constants import MODULES_TO_INSTRUMENT  # noqa: E402
-from aignostics.utils import boot, get_logger, gui_run  # noqa: E402
-
-boot(MODULES_TO_INSTRUMENT)
-logger = get_logger(__name__)
-
-gui_run(native=True, with_api=False, title="Aignostics Launchpad", icon="🔬")