aiagents4pharma 1.46.1__tar.gz → 1.46.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/dependabot.yml +1 -18
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/docker_build.yml +6 -6
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/docker_compose_release.yml +36 -9
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/mkdocs_deploy.yml +2 -2
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/package_build.yml +4 -4
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/pr-automation.yml +1 -1
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/release.yml +3 -3
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/security_audit.yml +7 -7
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/sonarcloud.yml +3 -3
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2aiagents4pharma.yml +5 -5
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2biomodels.yml +5 -5
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2cells.yml +5 -5
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2knowledgegraphs.yml +5 -5
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2scholars.yml +5 -5
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/PKG-INFO +31 -30
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/README.md +1 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/docs/index.md +1 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/package-lock.json +2 -2
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/package.json +1 -1
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/pyproject.toml +32 -32
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/uv.lock +493 -309
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.coveragerc +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/CODEOWNERS +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/ISSUE_TEMPLATE/config.yml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/ISSUE_TEMPLATE/documentation.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/ISSUE_TEMPLATE/question.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/PULL_REQUEST_TEMPLATE.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/labeler.yml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.gitignore +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.pre-commit-config.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/CHANGELOG.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/CODE_OF_CONDUCT.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/CONTRIBUTING.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/LICENSE +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/SECURITY.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/.dockerignore +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/Dockerfile +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/README.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/agents/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/agents/main_agent.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/agents/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/agents/main_agent/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/app/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/configs/config.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/.env.example +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/docker-compose.yml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/.env.example +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/docker-compose.yml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/install.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/states/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/states/state_talk2aiagents4pharma.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/tests/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2aiagents4pharma/tests/test_main_agent.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/.dockerignore +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/Dockerfile +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/README.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/agents/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/agents/t2b_agent.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/api/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/api/ols.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/api/uniprot.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/agents/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/app/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/app/frontend/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/app/frontend/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/config.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/ask_question/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/ask_question/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/get_annotation/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/configs/tools/get_annotation/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/install.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/models/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/models/basico_model.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/models/sys_bio_model.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/states/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/BIOMD0000000449_url.xml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/article_on_model_537.pdf +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_api.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_ask_question.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_basico_model.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_get_annotation.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_integration.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_load_biomodel.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_param_scan.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_query_article.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_search_models.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_simulate_model.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_steady_state.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/ask_question.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/custom_plotter.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/get_annotation.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/get_modelinfo.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/load_arguments.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/load_biomodel.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/parameter_scan.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/query_article.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/search_models.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/simulate_model.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/steady_state.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2biomodels/tools/utils.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/README.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/agents/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/agents/scp_agent.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/states/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/states/state_talk2cells.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/tools/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/tools/scp_agent/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/.dockerignore +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/Dockerfile +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/README.md +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/agents/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/agents/t2kg_agent.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/app/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/config.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/utils/database/milvus/__init__.py +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/utils/database/milvus/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/ols_terms/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/reactome_pathways/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/uniprot_proteins/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/configs/utils/pubchem_utils/default.yaml +0 -0
- {aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py +0 -0
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### ⚡ Quick Deploy
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```bash
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# Download and extract
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@v6
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uses: actions/download-artifact@
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@v6
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uses: astral-sh/setup-uv@
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skip-existing: true
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uses: softprops/action-gh-release@
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uses: astral-sh/setup-uv@
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uses: actions/download-artifact@
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uses: astral-sh/setup-uv@
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uses: actions/download-artifact@
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uses: actions/checkout@
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uses: actions/checkout@v5
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fetch-depth: 0 # Shallow clones should be disabled for better analysis
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ref: ${{ github.event.workflow_run.head_branch }}
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uses: actions/download-artifact@
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uses: actions/download-artifact@v5
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fi
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- name: SonarCloud Scan
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uses: SonarSource/sonarqube-scan-action@v5.
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uses: SonarSource/sonarqube-scan-action@v5.3.1
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
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SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
|
{aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2aiagents4pharma.yml
RENAMED
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@v6
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@v6
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flags: talk2aiagents4pharma
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{aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2biomodels.yml
RENAMED
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@v6
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uses: codecov/codecov-action@
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uses: codecov/codecov-action@v5
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with:
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file: ./coverage.xml
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flags: talk2biomodels
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name: Code Quality
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|
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with:
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uses: astral-sh/setup-uv@
|
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uses: astral-sh/setup-uv@v6
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|
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|
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|
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with:
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uses: astral-sh/setup-uv@
|
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uses: astral-sh/setup-uv@v6
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uses: codecov/codecov-action@
|
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uses: codecov/codecov-action@v5
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file: ./coverage.xml
|
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flags: talk2cells
|
{aiagents4pharma-1.46.1 → aiagents4pharma-1.46.3}/.github/workflows/tests_talk2knowledgegraphs.yml
RENAMED
@@ -20,12 +20,12 @@ jobs:
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name: Code Quality
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runs-on: ubuntu-latest
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with:
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- name: Install uv
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uses: astral-sh/setup-uv@
|
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uses: astral-sh/setup-uv@v6
|
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|
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|
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runs-on: ${{ matrix.os }}
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with:
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uses: astral-sh/setup-uv@
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uses: astral-sh/setup-uv@v6
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run: uv python install ${{ matrix.python-version }}
|
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uses: codecov/codecov-action@
|
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uses: codecov/codecov-action@v5
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with:
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file: ./coverage.xml
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flags: talk2knowledgegraphs
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name: Code Quality
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runs-on: ubuntu-latest
|
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steps:
|
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|
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with:
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- name: Install uv
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uses: astral-sh/setup-uv@
|
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uses: astral-sh/setup-uv@v6
|
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- name: Set up Python
|
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run: uv python install 3.12
|
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runs-on: ${{ matrix.os }}
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steps:
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|
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with:
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fetch-depth: 0
|
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- name: Install uv
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uses: astral-sh/setup-uv@
|
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uses: astral-sh/setup-uv@v6
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- name: Set up Python ${{ matrix.python-version }}
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run: uv python install ${{ matrix.python-version }}
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uses: codecov/codecov-action@
|
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uses: codecov/codecov-action@v5
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with:
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file: ./coverage.xml
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flags: talk2scholars
|
@@ -1,89 +1,89 @@
|
|
1
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Metadata-Version: 2.4
|
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Name: aiagents4pharma
|
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-
Version: 1.46.
|
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+
Version: 1.46.3
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Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D.
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License-File: LICENSE
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
|
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Classifier: Programming Language :: Python :: 3
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Requires-Python: >=3.12
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Requires-Dist: anndata==0.
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Requires-Dist: anndata==0.12.2
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Requires-Dist: azure-identity==1.24.0
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Requires-Dist: beautifulsoup4==4.13.
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Requires-Dist: beautifulsoup4==4.13.5
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Requires-Dist: cell2sentence==1.1.0
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Requires-Dist: cloudscraper==1.2.71
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Requires-Dist: coverage==7.6
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Requires-Dist: coverage==7.10.6
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Requires-Dist: einops==0.8.
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Requires-Dist: gseapy==1.1.
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Requires-Dist: h5py==3.
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Requires-Dist: gseapy==1.1.9
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Requires-Dist: huggingface-hub==0.34.4
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Requires-Dist: igraph==0.11.
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Requires-Dist: ipykernel==6.
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Requires-Dist: igraph==0.11.9
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Requires-Dist: ipykernel==6.30.1
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Requires-Dist: ipython==8.32.0
|
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Requires-Dist: joblib==1.
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Requires-Dist: joblib==1.5.2
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Requires-Dist: langchain-experimental==0.3.
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Requires-Dist: langchain-milvus==0.2.
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Requires-Dist: langchain-experimental==0.3.4
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